Wall clock time and date at job start Mon Mar 30 2020 03:00:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.46900 * 110.99914 * 2 1
4 4 C 1.50698 * 109.47189 * 66.05101 * 3 2 1
5 5 H 1.07992 * 119.99847 * 359.97438 * 4 3 2
6 6 C 1.37878 * 119.99781 * 180.02562 * 4 3 2
7 7 N 1.31512 * 120.00178 * 359.97438 * 6 4 3
8 8 Si 1.86804 * 119.99761 * 179.97438 * 6 4 3
9 9 H 1.48500 * 109.47196 * 89.99679 * 8 6 4
10 10 H 1.48500 * 109.47157 * 209.99631 * 8 6 4
11 11 H 1.48503 * 109.47131 * 329.99876 * 8 6 4
12 12 C 1.46906 * 110.99600 * 236.04662 * 2 1 3
13 13 C 1.52995 * 109.47416 * 293.95091 * 12 2 1
14 14 C 1.50689 * 109.47479 * 180.02562 * 13 12 2
15 15 C 1.38293 * 119.92619 * 90.00264 * 14 13 12
16 16 C 1.38103 * 120.07544 * 180.02562 * 15 14 13
17 17 C 1.38914 * 119.92585 * 0.02562 * 16 15 14
18 18 N 1.39671 * 120.07130 * 179.97438 * 17 16 15
19 19 C 1.38912 * 119.84788 * 0.25342 * 17 16 15
20 20 C 1.38098 * 119.92495 * 359.48977 * 19 17 16
21 21 H 1.08999 * 109.47396 * 183.95539 * 1 2 3
22 22 H 1.08999 * 109.47197 * 303.95560 * 1 2 3
23 23 H 1.09003 * 109.47272 * 63.95106 * 1 2 3
24 24 H 1.09004 * 109.46790 * 186.04987 * 3 2 1
25 25 H 1.09001 * 109.46988 * 306.04250 * 3 2 1
26 26 H 0.97006 * 119.99793 * 180.02562 * 7 6 4
27 27 H 1.09004 * 109.46768 * 173.95721 * 12 2 1
28 28 H 1.09002 * 109.47109 * 53.95558 * 12 2 1
29 29 H 1.09007 * 109.46938 * 59.99858 * 13 12 2
30 30 H 1.09003 * 109.47088 * 300.01040 * 13 12 2
31 31 H 1.08001 * 119.95818 * 0.04180 * 15 14 13
32 32 H 1.07999 * 120.03416 * 179.97438 * 16 15 14
33 33 H 0.97001 * 120.00529 * 0.02562 * 18 17 16
34 34 H 0.97005 * 119.99745 * 179.72366 * 18 17 16
35 35 H 1.08005 * 120.03088 * 179.72680 * 19 17 16
36 36 H 1.08005 * 119.96252 * 180.25688 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.6370 2.0471 1.2985
5 1 1.0741 1.5115 2.0484
6 6 2.0269 3.3495 1.5284
7 7 2.7119 4.0019 0.6149
8 14 1.5820 4.1872 3.1377
9 1 2.6586 3.9511 4.1329
10 1 1.4295 5.6468 2.9103
11 1 0.3042 3.6297 3.6493
12 6 1.9954 -0.7660 -1.1377
13 6 1.6314 -2.2426 -0.9704
14 6 2.1719 -3.0285 -2.1371
15 6 3.4417 -3.5726 -2.0735
16 6 3.9403 -4.2929 -3.1411
17 6 3.1650 -4.4702 -4.2800
18 7 3.6664 -5.1977 -5.3617
19 6 1.8921 -3.9173 -4.3428
20 6 1.3977 -3.2027 -3.2696
21 1 -0.3634 -1.0252 0.0709
22 1 -0.3633 0.5740 0.8524
23 1 -0.3634 0.4513 -0.9233
24 1 3.0797 1.3444 -0.1083
25 1 1.5611 1.9273 -0.8310
26 1 2.9865 4.9180 0.7769
27 1 3.0797 -0.6612 -1.1757
28 1 1.5610 -0.3872 -2.0629
29 1 0.5471 -2.3475 -0.9323
30 1 2.0657 -2.6213 -0.0452
31 1 4.0440 -3.4343 -1.1877
32 1 4.9322 -4.7172 -3.0908
33 1 4.5568 -5.5801 -5.3181
34 1 3.1225 -5.3242 -6.1549
35 1 1.2885 -4.0496 -5.2286
36 1 0.4066 -2.7761 -3.3162
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000035677199.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:26
Heat of formation + Delta-G solvation = 17.907296 kcal
Electronic energy + Delta-G solvation = -15658.625144 eV
Core-core repulsion = 13141.947934 eV
Total energy + Delta-G solvation = -2516.677209 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 234.143 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.38928 -36.80532 -34.83721 -32.62061 -31.00362 -30.78779 -27.54859 -26.70722
-24.89865 -22.73821 -22.43058 -20.70729 -19.83400 -17.09807 -16.89977 -16.26123
-15.50419 -14.79171 -14.51583 -14.11879 -13.83584 -13.58105 -13.29240 -13.18855
-12.97782 -12.39344 -11.91546 -11.57109 -11.28622 -11.05158 -10.90994 -10.82258
-10.57153 -10.44747 -10.30030 -10.17970 -9.70510 -9.14209 -8.83031 -8.38541
-7.41983 -7.14402 -5.97660 -3.98768 1.53471 1.69632 3.35547 3.41056
3.44922 3.78640 3.96543 4.46936 4.94507 4.99624 5.06961 5.37019
5.43985 5.47885 5.61054 5.73336 5.83987 5.92359 6.13732 6.16996
6.25300 6.30239 6.39175 6.50988 6.58402 6.64039 6.83233 6.95908
6.98724 7.37768 7.42086 7.45862 7.64331 7.86285 8.16380 8.28569
8.62989 9.09250 9.65141 11.13302
Molecular weight = 234.14amu
Principal moments of inertia in cm(-1)
A = 0.055652 B = 0.004090 C = 0.003998
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.003648 B = 6844.289481 C = 7002.578287
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 N -0.543 5.543
3 C 0.192 3.808
4 C -0.506 4.506
5 H 0.063 0.937
6 C 0.054 3.946
7 N -0.900 5.900
8 Si 0.898 3.102
9 H -0.280 1.280
10 H -0.288 1.288
11 H -0.274 1.274
12 C 0.063 3.937
13 C -0.071 4.071
14 C -0.126 4.126
15 C -0.067 4.067
16 C -0.197 4.197
17 C 0.202 3.798
18 N -0.884 5.884
19 C -0.197 4.197
20 C -0.070 4.070
21 H 0.046 0.954
22 H 0.072 0.928
23 H 0.009 0.991
24 H 0.029 0.971
25 H -0.010 1.010
26 H 0.261 0.739
27 H 0.066 0.934
28 H 0.020 0.980
29 H 0.065 0.935
30 H 0.074 0.926
31 H 0.123 0.877
32 H 0.116 0.884
33 H 0.395 0.605
34 H 0.395 0.605
35 H 0.115 0.885
36 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.124 -16.987 -9.919 19.671
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 N -0.267 5.267
3 C 0.067 3.933
4 C -0.544 4.544
5 H 0.082 0.918
6 C -0.147 4.147
7 N -0.540 5.540
8 Si 0.726 3.274
9 H -0.206 1.206
10 H -0.214 1.214
11 H -0.199 1.199
12 C -0.066 4.066
13 C -0.109 4.109
14 C -0.129 4.129
15 C -0.086 4.086
16 C -0.219 4.219
17 C 0.099 3.901
18 N -0.424 5.424
19 C -0.220 4.220
20 C -0.089 4.089
21 H 0.065 0.935
22 H 0.091 0.909
23 H 0.027 0.973
24 H 0.047 0.953
25 H 0.008 0.992
26 H 0.070 0.930
27 H 0.084 0.916
28 H 0.039 0.961
29 H 0.084 0.916
30 H 0.093 0.907
31 H 0.141 0.859
32 H 0.134 0.866
33 H 0.223 0.777
34 H 0.222 0.778
35 H 0.133 0.867
36 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 0.099 -16.991 -9.477 19.455
hybrid contribution -0.241 0.800 -0.350 0.906
sum -0.142 -16.191 -9.827 18.940
Atomic orbital electron populations
1.22244 0.89197 0.99471 1.00363 1.62107 1.06807 1.17710 1.40077
1.19727 0.95365 0.81724 0.96507 1.21188 1.34642 0.96875 1.01723
0.91843 1.25002 0.95395 0.97368 0.96968 1.69968 1.38541 1.11432
1.34018 0.86498 0.78849 0.78391 0.83657 1.20640 1.21376 1.19868
1.22023 0.99975 0.92234 0.92364 1.20547 1.00481 0.94432 0.95417
1.19787 0.95018 1.01377 0.96669 1.20862 0.94845 0.95157 0.97729
1.20549 1.00376 1.06832 0.94160 1.17759 0.92746 0.91677 0.87946
1.42418 1.20348 1.61875 1.17732 1.20520 0.95513 1.05594 1.00383
1.20812 0.99249 0.96491 0.92314 0.93506 0.90892 0.97275 0.95296
0.99241 0.92986 0.91556 0.96146 0.91597 0.90692 0.85949 0.86597
0.77731 0.77768 0.86689 0.86327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.72 9.14 60.06 0.55 1.27 16
2 N -0.54 -12.19 4.75 -244.36 -1.16 -13.35 16
3 C 0.19 5.19 4.72 -4.98 -0.02 5.17 16
4 C -0.51 -14.56 8.46 -34.44 -0.29 -14.85 16
5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16
6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16
7 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16
8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16
9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16
10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16
12 C 0.06 1.19 4.94 -3.82 -0.02 1.17 16
13 C -0.07 -1.10 5.26 -27.89 -0.15 -1.25 16
14 C -0.13 -1.78 5.14 -104.59 -0.54 -2.32 16
15 C -0.07 -0.89 9.69 -39.61 -0.38 -1.28 16
16 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16
17 C 0.20 2.29 6.75 -83.79 -0.57 1.72 16
18 N -0.88 -7.00 9.09 32.41 0.29 -6.71 16
19 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16
20 C -0.07 -0.92 9.69 -39.62 -0.38 -1.30 16
21 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16
22 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16
23 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16
24 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16
25 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16
26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
27 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16
28 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16
29 H 0.07 0.98 6.50 -51.92 -0.34 0.64 16
30 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16
31 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16
32 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16
33 H 0.40 2.44 8.84 -40.82 -0.36 2.08 16
34 H 0.39 2.42 8.84 -40.82 -0.36 2.06 16
35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16
36 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16
LS Contribution 300.44 15.07 4.53 4.53
Total: -1.00 -31.57 300.44 -8.76 -40.33
By element:
Atomic # 1 Polarization: 5.93 SS G_CDS: -5.46 Total: 0.47 kcal
Atomic # 6 Polarization: -12.98 SS G_CDS: -2.68 Total: -15.66 kcal
Atomic # 7 Polarization: -46.49 SS G_CDS: -0.13 Total: -46.62 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 4.53 Total: 4.53 kcal
Total: -31.57 -8.76 -40.33 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000035677199.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.236 kcal
(2) G-P(sol) polarization free energy of solvation -31.569 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.667 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.907 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds