Wall clock time and date at job start Mon Mar 30 2020 03:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99914 * 2 1 4 4 C 1.50698 * 109.47189 * 66.05101 * 3 2 1 5 5 H 1.07992 * 119.99847 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99781 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00178 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99761 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47196 * 89.99679 * 8 6 4 10 10 H 1.48500 * 109.47157 * 209.99631 * 8 6 4 11 11 H 1.48503 * 109.47131 * 329.99876 * 8 6 4 12 12 C 1.46906 * 110.99600 * 236.04662 * 2 1 3 13 13 C 1.52995 * 109.47416 * 293.95091 * 12 2 1 14 14 C 1.50689 * 109.47479 * 180.02562 * 13 12 2 15 15 C 1.38293 * 119.92619 * 90.00264 * 14 13 12 16 16 C 1.38103 * 120.07544 * 180.02562 * 15 14 13 17 17 C 1.38914 * 119.92585 * 0.02562 * 16 15 14 18 18 N 1.39671 * 120.07130 * 179.97438 * 17 16 15 19 19 C 1.38912 * 119.84788 * 0.25342 * 17 16 15 20 20 C 1.38098 * 119.92495 * 359.48977 * 19 17 16 21 21 H 1.08999 * 109.47396 * 183.95539 * 1 2 3 22 22 H 1.08999 * 109.47197 * 303.95560 * 1 2 3 23 23 H 1.09003 * 109.47272 * 63.95106 * 1 2 3 24 24 H 1.09004 * 109.46790 * 186.04987 * 3 2 1 25 25 H 1.09001 * 109.46988 * 306.04250 * 3 2 1 26 26 H 0.97006 * 119.99793 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46768 * 173.95721 * 12 2 1 28 28 H 1.09002 * 109.47109 * 53.95558 * 12 2 1 29 29 H 1.09007 * 109.46938 * 59.99858 * 13 12 2 30 30 H 1.09003 * 109.47088 * 300.01040 * 13 12 2 31 31 H 1.08001 * 119.95818 * 0.04180 * 15 14 13 32 32 H 1.07999 * 120.03416 * 179.97438 * 16 15 14 33 33 H 0.97001 * 120.00529 * 0.02562 * 18 17 16 34 34 H 0.97005 * 119.99745 * 179.72366 * 18 17 16 35 35 H 1.08005 * 120.03088 * 179.72680 * 19 17 16 36 36 H 1.08005 * 119.96252 * 180.25688 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5115 2.0484 6 6 2.0269 3.3495 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5820 4.1872 3.1377 9 1 2.6586 3.9511 4.1329 10 1 1.4295 5.6468 2.9103 11 1 0.3042 3.6297 3.6493 12 6 1.9954 -0.7660 -1.1377 13 6 1.6314 -2.2426 -0.9704 14 6 2.1719 -3.0285 -2.1371 15 6 3.4417 -3.5726 -2.0735 16 6 3.9403 -4.2929 -3.1411 17 6 3.1650 -4.4702 -4.2800 18 7 3.6664 -5.1977 -5.3617 19 6 1.8921 -3.9173 -4.3428 20 6 1.3977 -3.2027 -3.2696 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3634 0.4513 -0.9233 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 2.9865 4.9180 0.7769 27 1 3.0797 -0.6612 -1.1757 28 1 1.5610 -0.3872 -2.0629 29 1 0.5471 -2.3475 -0.9323 30 1 2.0657 -2.6213 -0.0452 31 1 4.0440 -3.4343 -1.1877 32 1 4.9322 -4.7172 -3.0908 33 1 4.5568 -5.5801 -5.3181 34 1 3.1225 -5.3242 -6.1549 35 1 1.2885 -4.0496 -5.2286 36 1 0.4066 -2.7761 -3.3162 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035677199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:26 Heat of formation + Delta-G solvation = 17.907296 kcal Electronic energy + Delta-G solvation = -15658.625144 eV Core-core repulsion = 13141.947934 eV Total energy + Delta-G solvation = -2516.677209 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.38928 -36.80532 -34.83721 -32.62061 -31.00362 -30.78779 -27.54859 -26.70722 -24.89865 -22.73821 -22.43058 -20.70729 -19.83400 -17.09807 -16.89977 -16.26123 -15.50419 -14.79171 -14.51583 -14.11879 -13.83584 -13.58105 -13.29240 -13.18855 -12.97782 -12.39344 -11.91546 -11.57109 -11.28622 -11.05158 -10.90994 -10.82258 -10.57153 -10.44747 -10.30030 -10.17970 -9.70510 -9.14209 -8.83031 -8.38541 -7.41983 -7.14402 -5.97660 -3.98768 1.53471 1.69632 3.35547 3.41056 3.44922 3.78640 3.96543 4.46936 4.94507 4.99624 5.06961 5.37019 5.43985 5.47885 5.61054 5.73336 5.83987 5.92359 6.13732 6.16996 6.25300 6.30239 6.39175 6.50988 6.58402 6.64039 6.83233 6.95908 6.98724 7.37768 7.42086 7.45862 7.64331 7.86285 8.16380 8.28569 8.62989 9.09250 9.65141 11.13302 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.055652 B = 0.004090 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.003648 B = 6844.289481 C = 7002.578287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.543 5.543 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.063 3.937 13 C -0.071 4.071 14 C -0.126 4.126 15 C -0.067 4.067 16 C -0.197 4.197 17 C 0.202 3.798 18 N -0.884 5.884 19 C -0.197 4.197 20 C -0.070 4.070 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.029 0.971 25 H -0.010 1.010 26 H 0.261 0.739 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.395 0.605 34 H 0.395 0.605 35 H 0.115 0.885 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 -16.987 -9.919 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.267 5.267 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.066 4.066 13 C -0.109 4.109 14 C -0.129 4.129 15 C -0.086 4.086 16 C -0.219 4.219 17 C 0.099 3.901 18 N -0.424 5.424 19 C -0.220 4.220 20 C -0.089 4.089 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.027 0.973 24 H 0.047 0.953 25 H 0.008 0.992 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.223 0.777 34 H 0.222 0.778 35 H 0.133 0.867 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.099 -16.991 -9.477 19.455 hybrid contribution -0.241 0.800 -0.350 0.906 sum -0.142 -16.191 -9.827 18.940 Atomic orbital electron populations 1.22244 0.89197 0.99471 1.00363 1.62107 1.06807 1.17710 1.40077 1.19727 0.95365 0.81724 0.96507 1.21188 1.34642 0.96875 1.01723 0.91843 1.25002 0.95395 0.97368 0.96968 1.69968 1.38541 1.11432 1.34018 0.86498 0.78849 0.78391 0.83657 1.20640 1.21376 1.19868 1.22023 0.99975 0.92234 0.92364 1.20547 1.00481 0.94432 0.95417 1.19787 0.95018 1.01377 0.96669 1.20862 0.94845 0.95157 0.97729 1.20549 1.00376 1.06832 0.94160 1.17759 0.92746 0.91677 0.87946 1.42418 1.20348 1.61875 1.17732 1.20520 0.95513 1.05594 1.00383 1.20812 0.99249 0.96491 0.92314 0.93506 0.90892 0.97275 0.95296 0.99241 0.92986 0.91556 0.96146 0.91597 0.90692 0.85949 0.86597 0.77731 0.77768 0.86689 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.54 -12.19 4.75 -244.36 -1.16 -13.35 16 3 C 0.19 5.19 4.72 -4.98 -0.02 5.17 16 4 C -0.51 -14.56 8.46 -34.44 -0.29 -14.85 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 C 0.06 1.19 4.94 -3.82 -0.02 1.17 16 13 C -0.07 -1.10 5.26 -27.89 -0.15 -1.25 16 14 C -0.13 -1.78 5.14 -104.59 -0.54 -2.32 16 15 C -0.07 -0.89 9.69 -39.61 -0.38 -1.28 16 16 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16 17 C 0.20 2.29 6.75 -83.79 -0.57 1.72 16 18 N -0.88 -7.00 9.09 32.41 0.29 -6.71 16 19 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16 20 C -0.07 -0.92 9.69 -39.62 -0.38 -1.30 16 21 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16 22 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 24 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 25 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.07 1.30 7.93 -51.93 -0.41 0.88 16 28 H 0.02 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.07 0.98 6.50 -51.92 -0.34 0.64 16 30 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 31 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.40 2.44 8.84 -40.82 -0.36 2.08 16 34 H 0.39 2.42 8.84 -40.82 -0.36 2.06 16 35 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 36 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 300.44 15.07 4.53 4.53 Total: -1.00 -31.57 300.44 -8.76 -40.33 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.46 Total: 0.47 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.68 Total: -15.66 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.13 Total: -46.62 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.57 -8.76 -40.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035677199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.236 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds