Wall clock time and date at job start Mon Mar 30 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99914 * 2 1 4 4 C 1.50698 * 109.47189 * 66.05101 * 3 2 1 5 5 H 1.07992 * 119.99847 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99781 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00178 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 119.99761 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47196 * 89.99679 * 8 6 4 10 10 H 1.48500 * 109.47157 * 209.99631 * 8 6 4 11 11 H 1.48503 * 109.47131 * 329.99876 * 8 6 4 12 12 C 1.46906 * 110.99600 * 236.04662 * 2 1 3 13 13 C 1.52995 * 109.47416 * 293.95091 * 12 2 1 14 14 C 1.50689 * 109.47479 * 180.02562 * 13 12 2 15 15 C 1.38293 * 119.92619 * 90.00264 * 14 13 12 16 16 C 1.38103 * 120.07544 * 180.02562 * 15 14 13 17 17 C 1.38914 * 119.92585 * 0.02562 * 16 15 14 18 18 N 1.39671 * 120.07130 * 179.97438 * 17 16 15 19 19 C 1.38912 * 119.84788 * 0.25342 * 17 16 15 20 20 C 1.38098 * 119.92495 * 359.48977 * 19 17 16 21 21 H 1.08999 * 109.47396 * 183.95539 * 1 2 3 22 22 H 1.08999 * 109.47197 * 303.95560 * 1 2 3 23 23 H 1.09003 * 109.47272 * 63.95106 * 1 2 3 24 24 H 1.09004 * 109.46790 * 186.04987 * 3 2 1 25 25 H 1.09001 * 109.46988 * 306.04250 * 3 2 1 26 26 H 0.97006 * 119.99793 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.46768 * 173.95721 * 12 2 1 28 28 H 1.09002 * 109.47109 * 53.95558 * 12 2 1 29 29 H 1.09007 * 109.46938 * 59.99858 * 13 12 2 30 30 H 1.09003 * 109.47088 * 300.01040 * 13 12 2 31 31 H 1.08001 * 119.95818 * 0.04180 * 15 14 13 32 32 H 1.07999 * 120.03416 * 179.97438 * 16 15 14 33 33 H 0.97001 * 120.00529 * 0.02562 * 18 17 16 34 34 H 0.97005 * 119.99745 * 179.72366 * 18 17 16 35 35 H 1.08005 * 120.03088 * 179.72680 * 19 17 16 36 36 H 1.08005 * 119.96252 * 180.25688 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0741 1.5115 2.0484 6 6 2.0269 3.3495 1.5284 7 7 2.7119 4.0019 0.6149 8 14 1.5820 4.1872 3.1377 9 1 2.6586 3.9511 4.1329 10 1 1.4295 5.6468 2.9103 11 1 0.3042 3.6297 3.6493 12 6 1.9954 -0.7660 -1.1377 13 6 1.6314 -2.2426 -0.9704 14 6 2.1719 -3.0285 -2.1371 15 6 3.4417 -3.5726 -2.0735 16 6 3.9403 -4.2929 -3.1411 17 6 3.1650 -4.4702 -4.2800 18 7 3.6664 -5.1977 -5.3617 19 6 1.8921 -3.9173 -4.3428 20 6 1.3977 -3.2027 -3.2696 21 1 -0.3634 -1.0252 0.0709 22 1 -0.3633 0.5740 0.8524 23 1 -0.3634 0.4513 -0.9233 24 1 3.0797 1.3444 -0.1083 25 1 1.5611 1.9273 -0.8310 26 1 2.9865 4.9180 0.7769 27 1 3.0797 -0.6612 -1.1757 28 1 1.5610 -0.3872 -2.0629 29 1 0.5471 -2.3475 -0.9323 30 1 2.0657 -2.6213 -0.0452 31 1 4.0440 -3.4343 -1.1877 32 1 4.9322 -4.7172 -3.0908 33 1 4.5568 -5.5801 -5.3181 34 1 3.1225 -5.3242 -6.1549 35 1 1.2885 -4.0496 -5.2286 36 1 0.4066 -2.7761 -3.3162 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035677199.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:25 Heat of formation + Delta-G solvation = -3.218855 kcal Electronic energy + Delta-G solvation = -15659.541242 eV Core-core repulsion = 13141.947934 eV Total energy + Delta-G solvation = -2517.593308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35068 -38.45405 -35.90823 -34.66691 -32.30334 -31.71670 -29.32399 -28.22007 -26.56649 -24.06836 -23.66846 -22.09132 -21.33514 -18.48811 -17.95036 -17.68738 -16.92778 -16.42890 -16.10500 -15.56170 -15.09684 -15.08577 -14.35699 -14.25605 -14.16287 -13.86419 -13.84598 -13.15968 -12.96070 -12.69058 -12.61345 -12.29300 -12.16119 -11.97897 -11.83453 -11.49163 -11.38007 -11.03830 -10.61037 -9.77703 -9.01204 -8.28046 -8.19162 -6.30341 0.59288 0.72386 1.42088 1.44322 1.55413 2.41538 2.97903 3.09297 3.12559 3.41298 3.98773 4.16816 4.21680 4.27905 4.45569 4.57743 4.63897 4.70284 4.70868 4.79257 5.00738 5.06945 5.07900 5.18110 5.23477 5.28016 5.36072 5.46967 5.59745 5.66413 5.93864 6.05815 6.06247 6.35281 6.65108 6.66733 6.86312 7.06479 7.39515 8.91819 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.055652 B = 0.004090 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.003648 B = 6844.289481 C = 7002.578287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.550 5.550 3 C 0.206 3.794 4 C -0.524 4.524 5 H 0.065 0.935 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.973 3.027 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.262 1.262 12 C 0.067 3.933 13 C -0.054 4.054 14 C -0.150 4.150 15 C -0.078 4.078 16 C -0.207 4.207 17 C 0.204 3.796 18 N -0.870 5.870 19 C -0.206 4.206 20 C -0.078 4.078 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.008 0.992 24 H 0.000 1.000 25 H -0.041 1.041 26 H 0.265 0.735 27 H 0.052 0.948 28 H 0.016 0.984 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.124 0.876 32 H 0.135 0.865 33 H 0.406 0.594 34 H 0.406 0.594 35 H 0.136 0.864 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -18.333 -9.977 20.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.274 5.274 3 C 0.079 3.921 4 C -0.562 4.562 5 H 0.084 0.916 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.797 3.203 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.186 1.186 12 C -0.062 4.062 13 C -0.092 4.092 14 C -0.153 4.153 15 C -0.097 4.097 16 C -0.229 4.229 17 C 0.099 3.901 18 N -0.411 5.411 19 C -0.229 4.229 20 C -0.096 4.096 21 H 0.102 0.898 22 H 0.076 0.924 23 H 0.026 0.974 24 H 0.018 0.982 25 H -0.023 1.023 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.142 0.858 32 H 0.153 0.847 33 H 0.235 0.765 34 H 0.235 0.765 35 H 0.154 0.846 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.414 -18.382 -9.567 20.727 hybrid contribution -0.034 1.134 -0.461 1.224 sum -0.448 -17.248 -10.028 19.956 Atomic orbital electron populations 1.22261 0.87538 1.01535 0.99590 1.62054 1.08361 1.15035 1.41931 1.19398 0.93523 0.84081 0.95065 1.21492 1.34911 0.97547 1.02282 0.91637 1.25979 0.94985 0.98050 1.00895 1.70103 1.39438 1.11923 1.36280 0.85326 0.79047 0.77161 0.78732 1.19785 1.20753 1.18646 1.22061 0.98976 0.94237 0.90893 1.20345 1.01016 0.91640 0.96208 1.19691 0.95917 1.02872 0.96815 1.21000 0.94719 0.95516 0.98460 1.20774 1.01362 1.06766 0.94014 1.17910 0.92543 0.91162 0.88477 1.42405 1.20948 1.60584 1.17117 1.20774 0.96051 1.05315 1.00757 1.20975 0.99596 0.96687 0.92368 0.89793 0.92444 0.97359 0.98152 1.02301 0.92676 0.92939 0.96606 0.90681 0.90943 0.85824 0.84746 0.76510 0.76487 0.84624 0.85614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.14 127.69 1.17 2.72 16 2 N -0.55 -25.09 4.75 -927.03 -4.41 -29.50 16 3 C 0.21 11.57 4.72 85.56 0.40 11.97 16 4 C -0.52 -30.70 8.46 25.60 0.22 -30.48 16 5 H 0.07 3.73 7.12 -2.91 -0.02 3.71 16 6 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 7 N -0.94 -57.94 13.29 21.45 0.28 -57.66 16 8 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 12 C 0.07 2.57 4.94 86.30 0.43 3.00 16 13 C -0.05 -1.66 5.26 29.84 0.16 -1.50 16 14 C -0.15 -4.16 5.14 -19.84 -0.10 -4.27 16 15 C -0.08 -2.03 9.69 22.25 0.22 -1.81 16 16 C -0.21 -4.60 9.90 22.40 0.22 -4.38 16 17 C 0.20 4.19 6.75 38.22 0.26 4.45 16 18 N -0.87 -11.34 9.09 -51.37 -0.47 -11.80 16 19 C -0.21 -4.47 9.90 22.40 0.22 -4.25 16 20 C -0.08 -1.94 9.69 22.25 0.22 -1.72 16 21 H 0.08 2.71 6.47 -2.39 -0.02 2.69 16 22 H 0.06 2.45 6.76 -2.39 -0.02 2.44 16 23 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 24 H 0.00 0.02 7.93 -2.38 -0.02 0.00 16 25 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 26 H 0.26 15.30 8.31 -92.70 -0.77 14.53 16 27 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 28 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 29 H 0.07 2.11 6.50 -2.38 -0.02 2.10 16 30 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 31 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 33 H 0.41 3.83 8.84 -92.71 -0.82 3.01 16 34 H 0.41 3.75 8.84 -92.70 -0.82 2.93 16 35 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -68.28 300.44 0.73 -67.55 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -0.57 Total: 10.20 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 3.86 Total: -25.89 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -4.59 Total: -98.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.28 0.73 -67.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035677199.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.328 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds