Wall clock time and date at job start Mon Mar 30 2020 03:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86790 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47112 * 270.00034 * 3 2 1 5 5 H 1.48502 * 109.47180 * 30.00104 * 3 2 1 6 6 H 1.48498 * 109.47377 * 150.00097 * 3 2 1 7 7 C 1.37884 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00030 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99744 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.40128 * 66.46037 * 9 7 2 11 11 O 1.42100 * 106.40076 * 293.53968 * 9 7 2 12 12 N 1.65603 * 107.21593 * 179.97438 * 9 7 2 13 13 C 1.46503 * 119.99629 * 89.99954 * 12 9 7 14 14 C 1.52995 * 109.47505 * 263.66901 * 13 12 9 15 15 O 1.42901 * 109.46746 * 65.34143 * 14 13 12 16 16 C 1.46497 * 120.00171 * 269.99821 * 12 9 7 17 17 C 1.52995 * 117.49825 * 182.16939 * 16 12 9 18 18 C 1.52992 * 60.00334 * 252.51640 * 17 16 12 19 19 H 0.97007 * 119.99997 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47233 * 23.67261 * 13 12 9 21 21 H 1.09005 * 109.46754 * 143.67211 * 13 12 9 22 22 H 1.09000 * 109.47465 * 185.34512 * 14 13 12 23 23 H 1.08998 * 109.47379 * 305.34669 * 14 13 12 24 24 H 0.96701 * 113.99657 * 180.02562 * 15 14 13 25 25 H 1.08996 * 115.54930 * 327.88688 * 16 12 9 26 26 H 1.09004 * 117.50237 * 0.02562 * 17 16 12 27 27 H 1.09005 * 117.49813 * 145.02117 * 17 16 12 28 28 H 1.09011 * 117.49961 * 252.51426 * 18 17 16 29 29 H 1.08997 * 117.52209 * 107.48228 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0014 9 16 3.7665 -1.1942 -0.0012 10 8 4.1682 -0.6501 1.2485 11 8 4.1672 -0.6495 -1.2510 12 7 4.2565 -2.7761 -0.0011 13 6 4.4728 -3.4760 -1.2698 14 6 3.2195 -4.2755 -1.6313 15 8 2.1374 -3.3767 -1.8830 16 6 4.4739 -3.4755 1.2677 17 6 4.9750 -4.9195 1.2015 18 6 3.5291 -4.6296 1.6089 19 1 -0.4850 0.8401 -0.0004 20 1 4.6792 -2.7490 -2.0553 21 1 5.3204 -4.1542 -1.1706 22 1 3.4129 -4.8704 -2.5240 23 1 2.9585 -4.9357 -0.8043 24 1 1.3084 -3.8155 -2.1183 25 1 4.8296 -2.8561 2.0910 26 1 5.1434 -5.3491 0.2139 27 1 5.6610 -5.2505 1.9813 28 1 3.2637 -4.7697 2.6569 29 1 2.7456 -4.8682 0.8896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044510065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:47 Heat of formation + Delta-G solvation = -89.460168 kcal Electronic energy + Delta-G solvation = -16015.736413 eV Core-core repulsion = 13260.462501 eV Total energy + Delta-G solvation = -2755.273912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.21343 -36.06653 -35.39985 -34.30995 -32.89539 -32.57058 -28.34827 -26.16790 -22.86461 -21.92635 -20.71495 -18.51950 -17.77716 -17.12911 -16.56227 -15.42410 -15.08210 -14.49621 -14.19206 -13.78050 -13.55959 -13.15652 -12.66056 -12.23203 -11.95642 -11.57144 -11.39418 -11.27027 -10.89522 -10.70679 -10.59259 -10.46782 -10.23057 -10.01453 -9.67502 -9.39742 -9.03498 -8.86891 -8.03042 -6.61333 -5.05813 2.12571 3.16300 3.28009 3.37053 4.04351 4.09586 4.22416 4.70845 4.82224 5.07521 5.21047 5.26933 5.43441 5.50684 5.60432 5.67930 5.75697 5.86145 6.05170 6.11587 6.29623 6.32348 6.46523 6.76752 7.46460 7.69259 8.23258 8.56447 8.92771 10.51637 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.012422 C = 0.011375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.088835 B = 2253.561552 C = 2460.972551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.152 3.848 3 Si 0.794 3.206 4 H -0.249 1.249 5 H -0.257 1.257 6 H -0.223 1.223 7 C -0.981 4.981 8 H 0.131 0.869 9 S 2.678 3.322 10 O -1.013 7.013 11 O -1.010 7.010 12 N -0.968 5.968 13 C 0.117 3.883 14 C 0.046 3.954 15 O -0.539 6.539 16 C 0.095 3.905 17 C -0.191 4.191 18 C -0.198 4.198 19 H 0.276 0.724 20 H 0.099 0.901 21 H 0.083 0.917 22 H 0.042 0.958 23 H 0.048 0.952 24 H 0.371 0.629 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.111 -10.247 -0.424 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.065 4.065 3 Si 0.615 3.385 4 H -0.173 1.173 5 H -0.182 1.182 6 H -0.145 1.145 7 C -1.117 5.117 8 H 0.148 0.852 9 S 2.782 3.218 10 O -1.003 7.003 11 O -1.000 7.000 12 N -0.800 5.800 13 C -0.009 4.009 14 C -0.034 4.034 15 O -0.342 6.342 16 C -0.013 4.013 17 C -0.230 4.230 18 C -0.237 4.237 19 H 0.086 0.914 20 H 0.118 0.882 21 H 0.101 0.899 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.217 0.783 25 H 0.153 0.847 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.042 -8.957 -0.305 11.398 hybrid contribution -0.936 -0.142 -0.201 0.968 sum 6.106 -9.099 -0.507 10.969 Atomic orbital electron populations 1.69993 1.06399 1.28417 1.41276 1.24395 0.94698 0.98380 0.89035 0.87995 0.83608 0.85314 0.81576 1.17290 1.18169 1.14498 1.30354 1.14895 1.02117 1.64324 0.85150 1.01348 0.77741 0.69768 0.72921 1.93432 1.85617 1.75779 1.45473 1.93377 1.85663 1.75523 1.45424 1.57047 1.83565 1.31299 1.08088 1.21330 0.95566 0.97709 0.86263 1.22815 0.89604 0.92629 0.98305 1.86899 1.20769 1.34466 1.92115 1.21392 1.02995 0.88547 0.88317 1.23236 0.97970 0.98820 1.02926 1.23498 0.93164 1.04660 1.02423 0.91373 0.88247 0.89856 0.94028 0.93442 0.78321 0.84657 0.88593 0.88467 0.88499 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.54 13.96 55.43 0.77 -23.76 15 2 C 0.15 4.51 5.47 -17.82 -0.10 4.41 15 3 Si 0.79 21.35 26.54 -169.99 -4.51 16.84 15 4 H -0.25 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.26 -6.35 7.11 56.52 0.40 -5.95 15 6 H -0.22 -6.11 5.61 56.52 0.32 -5.79 15 7 C -0.98 -28.10 9.12 30.60 0.28 -27.83 15 8 H 0.13 3.76 6.95 -52.49 -0.36 3.40 15 9 S 2.68 70.31 4.15 -107.50 -0.45 69.86 15 10 O -1.01 -28.19 14.86 -57.17 -0.85 -29.04 15 11 O -1.01 -28.28 15.38 -57.17 -0.88 -29.16 15 12 N -0.97 -19.66 3.08 -107.31 -0.33 -19.99 15 13 C 0.12 1.99 5.43 -4.04 -0.02 1.97 15 14 C 0.05 0.71 7.26 37.15 0.27 0.98 15 15 O -0.54 -10.20 11.21 -35.23 -0.39 -10.60 15 16 C 0.10 1.65 6.32 -67.93 -0.43 1.22 15 17 C -0.19 -2.41 9.64 -26.74 -0.26 -2.67 15 18 C -0.20 -2.90 9.91 -26.73 -0.26 -3.17 15 19 H 0.28 7.47 8.31 -40.82 -0.34 7.13 15 20 H 0.10 1.85 6.89 -51.93 -0.36 1.49 15 21 H 0.08 1.09 6.40 -51.93 -0.33 0.76 15 22 H 0.04 0.50 8.14 -51.93 -0.42 0.08 15 23 H 0.05 0.66 5.20 -51.93 -0.27 0.39 15 24 H 0.37 5.38 9.12 45.56 0.42 5.79 15 25 H 0.14 2.39 7.49 -51.93 -0.39 2.00 15 26 H 0.10 1.10 6.25 -51.93 -0.32 0.77 15 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 15 28 H 0.10 1.28 8.14 -51.92 -0.42 0.85 15 29 H 0.10 1.52 5.87 -51.93 -0.30 1.21 15 LS Contribution 249.03 15.07 3.75 3.75 Total: -1.00 -34.80 249.03 -5.82 -40.62 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -2.41 Total: 6.56 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -0.52 Total: -25.09 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.44 Total: -43.75 kcal Atomic # 8 Polarization: -66.68 SS G_CDS: -2.12 Total: -68.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.51 Total: 16.84 kcal Atomic # 16 Polarization: 70.31 SS G_CDS: -0.45 Total: 69.86 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -34.80 -5.82 -40.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.840 kcal (2) G-P(sol) polarization free energy of solvation -34.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds