Wall clock time and date at job start Mon Mar 30 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86790 * 120.00435 * 2 1 4 4 H 1.48500 * 109.47112 * 270.00034 * 3 2 1 5 5 H 1.48502 * 109.47180 * 30.00104 * 3 2 1 6 6 H 1.48498 * 109.47377 * 150.00097 * 3 2 1 7 7 C 1.37884 * 119.99522 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00030 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99744 * 179.97438 * 7 2 1 10 10 O 1.42097 * 106.40128 * 66.46037 * 9 7 2 11 11 O 1.42100 * 106.40076 * 293.53968 * 9 7 2 12 12 N 1.65603 * 107.21593 * 179.97438 * 9 7 2 13 13 C 1.46503 * 119.99629 * 89.99954 * 12 9 7 14 14 C 1.52995 * 109.47505 * 263.66901 * 13 12 9 15 15 O 1.42901 * 109.46746 * 65.34143 * 14 13 12 16 16 C 1.46497 * 120.00171 * 269.99821 * 12 9 7 17 17 C 1.52995 * 117.49825 * 182.16939 * 16 12 9 18 18 C 1.52992 * 60.00334 * 252.51640 * 17 16 12 19 19 H 0.97007 * 119.99997 * 0.02562 * 1 2 3 20 20 H 1.09003 * 109.47233 * 23.67261 * 13 12 9 21 21 H 1.09005 * 109.46754 * 143.67211 * 13 12 9 22 22 H 1.09000 * 109.47465 * 185.34512 * 14 13 12 23 23 H 1.08998 * 109.47379 * 305.34669 * 14 13 12 24 24 H 0.96701 * 113.99657 * 180.02562 * 15 14 13 25 25 H 1.08996 * 115.54930 * 327.88688 * 16 12 9 26 26 H 1.09004 * 117.50237 * 0.02562 * 17 16 12 27 27 H 1.09005 * 117.49813 * 145.02117 * 17 16 12 28 28 H 1.09011 * 117.49961 * 252.51426 * 18 17 16 29 29 H 1.08997 * 117.52209 * 107.48228 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0014 9 16 3.7665 -1.1942 -0.0012 10 8 4.1682 -0.6501 1.2485 11 8 4.1672 -0.6495 -1.2510 12 7 4.2565 -2.7761 -0.0011 13 6 4.4728 -3.4760 -1.2698 14 6 3.2195 -4.2755 -1.6313 15 8 2.1374 -3.3767 -1.8830 16 6 4.4739 -3.4755 1.2677 17 6 4.9750 -4.9195 1.2015 18 6 3.5291 -4.6296 1.6089 19 1 -0.4850 0.8401 -0.0004 20 1 4.6792 -2.7490 -2.0553 21 1 5.3204 -4.1542 -1.1706 22 1 3.4129 -4.8704 -2.5240 23 1 2.9585 -4.9357 -0.8043 24 1 1.3084 -3.8155 -2.1183 25 1 4.8296 -2.8561 2.0910 26 1 5.1434 -5.3491 0.2139 27 1 5.6610 -5.2505 1.9813 28 1 3.2637 -4.7697 2.6569 29 1 2.7456 -4.8682 0.8896 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510065.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:46 Heat of formation + Delta-G solvation = -119.515060 kcal Electronic energy + Delta-G solvation = -16017.039691 eV Core-core repulsion = 13260.462501 eV Total energy + Delta-G solvation = -2756.577190 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49778 -37.79677 -37.08999 -36.44661 -35.05964 -34.00739 -29.71101 -28.38375 -24.05741 -23.12860 -22.12987 -20.36756 -19.56492 -18.82960 -18.31908 -17.13680 -16.87504 -15.95472 -15.68205 -15.48391 -15.29867 -14.94050 -14.65441 -13.75680 -13.39455 -13.25350 -13.15283 -12.89766 -12.74421 -12.60662 -12.48126 -12.04093 -11.82875 -11.60120 -11.25439 -11.19420 -11.01504 -10.59055 -9.51430 -8.84458 -7.28991 0.18695 1.03712 1.13546 1.20868 1.92700 2.42628 2.52679 2.97545 3.45143 3.60242 3.83678 4.06081 4.14948 4.16666 4.31849 4.42238 4.43278 4.63166 4.75049 4.92230 4.93932 5.24265 5.35968 5.37507 5.54542 5.97101 6.31323 6.69412 7.10177 8.33240 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.031485 B = 0.012422 C = 0.011375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.088835 B = 2253.561552 C = 2460.972551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.109 3.891 3 Si 0.813 3.187 4 H -0.246 1.246 5 H -0.221 1.221 6 H -0.235 1.235 7 C -0.995 4.995 8 H 0.119 0.881 9 S 2.692 3.308 10 O -1.036 7.036 11 O -1.034 7.034 12 N -0.964 5.964 13 C 0.104 3.896 14 C 0.043 3.957 15 O -0.581 6.581 16 C 0.044 3.956 17 C -0.144 4.144 18 C -0.200 4.200 19 H 0.285 0.715 20 H 0.076 0.924 21 H 0.130 0.870 22 H 0.081 0.919 23 H 0.063 0.937 24 H 0.385 0.615 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.215 -12.079 -0.346 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.106 4.106 3 Si 0.632 3.368 4 H -0.170 1.170 5 H -0.143 1.143 6 H -0.158 1.158 7 C -1.129 5.129 8 H 0.137 0.863 9 S 2.795 3.205 10 O -1.026 7.026 11 O -1.024 7.024 12 N -0.800 5.800 13 C -0.021 4.021 14 C -0.036 4.036 15 O -0.387 6.387 16 C -0.062 4.062 17 C -0.183 4.183 18 C -0.240 4.240 19 H 0.096 0.904 20 H 0.095 0.905 21 H 0.148 0.852 22 H 0.099 0.901 23 H 0.081 0.919 24 H 0.233 0.767 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.108 -10.781 -0.226 13.492 hybrid contribution -1.246 0.275 -0.222 1.295 sum 6.862 -10.506 -0.448 12.556 Atomic orbital electron populations 1.70013 1.07040 1.29642 1.42241 1.25045 0.95510 1.00719 0.89285 0.87686 0.82927 0.84184 0.82044 1.16972 1.14300 1.15791 1.30801 1.17034 1.01604 1.63474 0.86336 1.00612 0.76468 0.71537 0.71879 1.93388 1.85394 1.77647 1.46214 1.93335 1.85469 1.77411 1.46221 1.56536 1.83026 1.29823 1.10572 1.21753 0.98339 0.97947 0.84038 1.23000 0.87792 0.92151 1.00646 1.86837 1.22480 1.36944 1.92462 1.21661 1.07208 0.90418 0.86947 1.23414 0.96565 0.93472 1.04820 1.23573 0.94418 1.02765 1.03196 0.90432 0.90541 0.85191 0.90142 0.91902 0.76690 0.86051 0.86533 0.85515 0.87298 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.18 13.96 21.45 0.30 -50.88 15 2 C 0.11 6.54 5.47 84.66 0.46 7.00 15 3 Si 0.81 43.25 26.54 68.60 1.82 45.07 15 4 H -0.25 -12.84 7.11 99.48 0.71 -12.13 15 5 H -0.22 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.24 -12.94 5.61 99.48 0.56 -12.38 15 7 C -0.99 -58.02 9.12 67.74 0.62 -57.40 15 8 H 0.12 7.02 6.95 -2.91 -0.02 6.99 15 9 S 2.69 142.63 4.15 -56.49 -0.23 142.40 15 10 O -1.04 -58.50 14.86 -128.00 -1.90 -60.40 15 11 O -1.03 -58.66 15.38 -128.00 -1.97 -60.63 15 12 N -0.96 -38.14 3.08 -493.41 -1.52 -39.66 15 13 C 0.10 3.29 5.43 86.38 0.47 3.76 15 14 C 0.04 1.20 7.26 71.98 0.52 1.72 15 15 O -0.58 -21.73 11.21 -148.98 -1.67 -23.40 15 16 C 0.04 1.45 6.32 44.99 0.28 1.74 15 17 C -0.14 -2.99 9.64 30.59 0.29 -2.70 15 18 C -0.20 -5.34 9.91 30.59 0.30 -5.03 15 19 H 0.29 15.49 8.31 -92.70 -0.77 14.72 15 20 H 0.08 2.78 6.89 -2.39 -0.02 2.77 15 21 H 0.13 2.83 6.40 -2.38 -0.02 2.82 15 22 H 0.08 1.63 8.14 -2.39 -0.02 1.61 15 23 H 0.06 1.55 5.20 -2.39 -0.01 1.54 15 24 H 0.38 11.07 9.12 -74.06 -0.68 10.40 15 25 H 0.12 4.24 7.49 -2.39 -0.02 4.22 15 26 H 0.12 1.97 6.25 -2.39 -0.01 1.95 15 27 H 0.13 1.96 8.14 -2.38 -0.02 1.94 15 28 H 0.11 2.59 8.14 -2.38 -0.02 2.58 15 29 H 0.09 2.65 5.87 -2.39 -0.01 2.63 15 Total: -1.00 -76.52 249.03 -1.86 -78.38 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.36 Total: 20.02 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 2.96 Total: -50.90 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -1.22 Total: -90.54 kcal Atomic # 8 Polarization: -138.89 SS G_CDS: -5.54 Total: -144.43 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.82 Total: 45.07 kcal Atomic # 16 Polarization: 142.63 SS G_CDS: -0.23 Total: 142.40 kcal Total: -76.52 -1.86 -78.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510065.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.132 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds