Wall clock time and date at job start Mon Mar 30 2020 03:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30684 * 1 3 3 Si 1.86791 * 120.00358 * 2 1 4 4 H 1.48508 * 109.47152 * 89.99945 * 3 2 1 5 5 H 1.48503 * 109.47182 * 210.00069 * 3 2 1 6 6 H 1.48496 * 109.47286 * 330.00186 * 3 2 1 7 7 C 1.40241 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99574 * 11.56646 * 7 2 1 9 9 C 1.39996 * 120.00267 * 191.56680 * 7 2 1 10 10 N 1.32980 * 125.95837 * 8.26516 * 9 7 2 11 11 C 1.32763 * 109.22160 * 179.97438 * 10 9 7 12 12 C 1.36213 * 108.62165 * 0.02562 * 11 10 9 13 13 C 1.50695 * 126.40317 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47199 * 84.97445 * 13 12 11 15 15 C 1.33642 * 126.03605 * 90.00135 * 14 13 12 16 16 N 1.31791 * 114.49599 * 179.97438 * 15 14 13 17 17 C 1.29027 * 117.12561 * 0.02562 * 16 15 14 18 18 S 1.70982 * 110.16723 * 359.72294 * 17 16 15 19 19 N 1.36424 * 107.19097 * 359.76836 * 12 11 10 20 20 H 0.96997 * 126.55426 * 180.22646 * 19 12 11 21 21 H 0.97006 * 120.00861 * 174.75841 * 1 2 3 22 22 H 1.08001 * 125.68810 * 179.97438 * 11 10 9 23 23 H 1.09004 * 109.47115 * 204.97544 * 13 12 11 24 24 H 1.08996 * 109.47459 * 324.96699 * 13 12 11 25 25 H 1.07994 * 122.75528 * 359.97438 * 15 14 13 26 26 H 1.07995 * 124.91355 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 2.4884 2.0463 1.4001 5 1 3.5385 1.4400 -0.7001 6 1 1.4384 2.6526 -0.7000 7 6 2.0080 -1.2146 0.0005 8 1 1.4843 -2.1404 -0.1866 9 6 3.3866 -1.2269 0.2436 10 7 4.1194 -0.1893 0.6372 11 6 5.3842 -0.5716 0.7669 12 6 5.4741 -1.8929 0.4482 13 6 6.7253 -2.7327 0.4602 14 6 6.9657 -3.2562 1.8527 15 6 6.5040 -4.4074 2.3504 16 7 6.8536 -4.6420 3.5993 17 6 7.5840 -3.7527 4.1827 18 16 7.9111 -2.4622 3.1098 19 7 4.2186 -2.3153 0.1219 20 1 3.9621 -3.2114 -0.1465 21 1 -0.4852 -0.8365 -0.0767 22 1 6.2051 0.0599 1.0731 23 1 6.6074 -3.5701 -0.2276 24 1 7.5744 -2.1241 0.1492 25 1 5.8944 -5.0894 1.7764 26 1 7.9407 -3.8163 5.2001 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074205299.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:47 Heat of formation + Delta-G solvation = 78.798042 kcal Electronic energy + Delta-G solvation = -13600.122434 eV Core-core repulsion = 11191.746417 eV Total energy + Delta-G solvation = -2408.376018 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.36975 -39.37633 -33.88140 -32.96994 -30.99101 -29.21187 -27.18845 -24.78587 -23.12760 -20.39496 -20.03044 -19.65937 -18.00961 -17.67611 -16.08228 -15.42448 -14.43907 -13.88881 -13.83123 -13.63589 -13.36183 -13.01495 -12.66750 -12.21856 -12.14315 -11.78015 -11.06016 -10.75583 -10.26309 -9.66156 -9.58071 -9.13949 -9.06290 -8.84663 -8.64820 -7.93354 -7.43772 -7.19131 -4.57580 0.84734 1.48617 1.87829 2.94008 3.17716 3.62971 3.73065 4.08210 4.32609 4.42733 4.46564 4.51790 5.20897 5.31544 5.32958 5.34710 5.72133 5.80788 6.01472 6.09440 6.27138 6.72677 7.23593 7.57082 7.64363 7.79513 7.97629 8.29759 8.70217 8.98206 9.59288 10.17363 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.043395 B = 0.006619 C = 0.006337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.076491 B = 4229.461696 C = 4417.692869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.064 3.936 3 Si 1.122 2.878 4 H -0.284 1.284 5 H -0.261 1.261 6 H -0.322 1.322 7 C -0.515 4.515 8 H 0.076 0.924 9 C 0.379 3.621 10 N -0.590 5.590 11 C 0.025 3.975 12 C -0.140 4.140 13 C 0.053 3.947 14 C -0.182 4.182 15 C 0.014 3.986 16 N -0.469 5.469 17 C -0.002 4.002 18 S 0.122 5.878 19 N -0.612 5.612 20 H 0.399 0.601 21 H 0.280 0.720 22 H 0.140 0.860 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.168 0.832 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.925 -5.347 2.924 15.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.157 4.157 3 Si 0.953 3.047 4 H -0.211 1.211 5 H -0.186 1.186 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.094 0.906 9 C 0.137 3.863 10 N -0.316 5.316 11 C -0.127 4.127 12 C -0.252 4.252 13 C 0.012 3.988 14 C -0.304 4.304 15 C -0.135 4.135 16 N -0.182 5.182 17 C -0.300 4.300 18 S 0.373 5.627 19 N -0.219 5.219 20 H 0.233 0.767 21 H 0.091 0.909 22 H 0.157 0.843 23 H 0.096 0.904 24 H 0.103 0.897 25 H 0.185 0.815 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 13.876 -2.562 3.608 14.564 hybrid contribution -0.344 -3.825 -0.537 3.878 sum 13.532 -6.387 3.072 15.275 Atomic orbital electron populations 1.70616 1.07855 1.32448 1.33768 1.27296 0.95129 1.04856 0.88422 0.82609 0.73521 0.70189 0.78425 1.21088 1.18629 1.25383 1.19385 0.89228 0.97109 1.49742 0.90594 1.20232 0.91890 0.80596 0.93611 1.69921 1.03163 1.27578 1.30943 1.21603 0.95066 0.91870 1.04176 1.20085 0.86229 0.95877 1.23039 1.18075 0.94737 0.97825 0.88195 1.26309 1.03565 0.98164 1.02339 1.21608 1.03429 0.97454 0.91059 1.66254 1.12422 1.30199 1.09375 1.28206 1.02760 0.94089 1.04913 1.83938 1.48030 1.25310 1.05399 1.42945 1.06930 1.11870 1.60160 0.76661 0.90879 0.84260 0.90361 0.89723 0.81452 0.78935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.92 13.65 55.56 0.76 -22.16 15 2 C 0.06 1.76 5.52 -17.29 -0.10 1.67 15 3 Si 1.12 28.10 26.36 -169.99 -4.48 23.62 15 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 15 5 H -0.26 -6.57 6.27 56.52 0.35 -6.22 15 6 H -0.32 -7.86 7.11 56.52 0.40 -7.46 15 7 C -0.51 -14.05 9.86 -38.17 -0.38 -14.43 15 8 H 0.08 2.06 8.06 -52.48 -0.42 1.63 15 9 C 0.38 9.80 7.30 -155.61 -1.14 8.66 15 10 N -0.59 -15.26 6.43 -12.73 -0.08 -15.35 15 11 C 0.02 0.55 11.77 -17.88 -0.21 0.34 15 12 C -0.14 -2.74 6.49 -81.28 -0.53 -3.27 15 13 C 0.05 0.77 6.31 -29.04 -0.18 0.59 15 14 C -0.18 -2.66 5.83 -35.92 -0.21 -2.87 15 15 C 0.01 0.22 11.25 -19.18 -0.22 0.00 15 16 N -0.47 -7.20 10.54 -15.75 -0.17 -7.36 15 17 C 0.00 -0.03 12.23 51.58 0.63 0.60 15 18 S 0.12 1.53 23.22 -107.50 -2.50 -0.96 15 19 N -0.61 -13.17 6.25 -8.21 -0.05 -13.22 15 20 H 0.40 7.43 8.96 -40.82 -0.37 7.06 15 21 H 0.28 7.49 8.73 -40.82 -0.36 7.14 15 22 H 0.14 2.67 8.06 -52.49 -0.42 2.25 15 23 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.17 2.29 8.06 -52.49 -0.42 1.87 15 26 H 0.19 1.74 8.06 -52.49 -0.42 1.32 15 LS Contribution 249.72 15.07 3.76 3.76 Total: -1.00 -31.15 249.72 -7.18 -38.34 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -2.10 Total: 2.04 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.32 Total: -8.71 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.46 Total: -58.09 kcal Atomic # 14 Polarization: 28.10 SS G_CDS: -4.48 Total: 23.62 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.50 Total: -0.96 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.15 -7.18 -38.34 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074205299.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.134 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds