Wall clock time and date at job start Mon Mar 30 2020 03:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86804 * 119.99857 * 2 1 4 4 H 1.48498 * 109.47429 * 89.99852 * 3 2 1 5 5 H 1.48501 * 109.47348 * 210.00403 * 3 2 1 6 6 H 1.48502 * 109.46974 * 330.00074 * 3 2 1 7 7 C 1.39854 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99620 * 11.05876 * 7 2 1 9 9 C 1.41421 * 120.00253 * 191.05742 * 7 2 1 10 10 C 1.42236 * 126.57082 * 187.83590 * 9 7 2 11 11 C 1.35072 * 105.54572 * 179.87764 * 10 9 7 12 12 C 1.50698 * 126.30439 * 180.12875 * 11 10 9 13 13 C 1.50698 * 109.47586 * 275.32784 * 12 11 10 14 14 C 1.33641 * 122.75073 * 124.99890 * 13 12 11 15 15 S 1.76198 * 107.92552 * 180.02562 * 14 13 12 16 16 C 1.70979 * 90.28210 * 0.02562 * 15 14 13 17 17 N 1.29026 * 110.16692 * 359.73400 * 16 15 14 18 18 N 1.35897 * 107.38130 * 0.38867 * 11 10 9 19 19 H 0.96995 * 124.85717 * 179.74374 * 18 11 10 20 20 N 1.28469 * 110.27842 * 359.74492 * 18 11 10 21 21 H 0.96998 * 119.99872 * 174.79189 * 1 2 3 22 22 H 1.08001 * 127.21908 * 0.02562 * 10 9 7 23 23 H 1.08999 * 109.47662 * 35.33328 * 12 11 10 24 24 H 1.09006 * 109.46949 * 155.32896 * 12 11 10 25 25 H 1.07997 * 126.03463 * 0.02562 * 14 13 12 26 26 H 1.07997 * 124.91641 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0466 1.4000 5 1 3.5404 1.4403 -0.7001 6 1 1.4402 2.6527 -0.7000 7 6 2.0082 -1.2111 -0.0005 8 1 1.4833 -2.1377 -0.1804 9 6 3.4028 -1.2225 0.2343 10 6 4.2734 -2.3407 0.1132 11 6 5.5023 -1.8788 0.4311 12 6 6.7787 -2.6796 0.4515 13 6 6.9098 -3.3822 1.7782 14 6 7.0814 -4.7034 1.8828 15 16 7.1852 -5.1029 3.5957 16 6 6.9869 -3.4538 4.0011 17 7 6.8687 -2.7437 2.9303 18 7 5.3744 -0.5604 0.7345 19 1 6.1039 0.0201 1.0024 20 7 4.1491 -0.1930 0.6160 21 1 -0.4850 -0.8366 -0.0763 22 1 4.0080 -3.3472 -0.1750 23 1 6.7575 -3.4179 -0.3500 24 1 7.6286 -2.0122 0.3083 25 1 7.1451 -5.4027 1.0623 26 1 6.9674 -3.0626 5.0075 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074205333.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:50 Heat of formation + Delta-G solvation = 102.977786 kcal Electronic energy + Delta-G solvation = -13644.097498 eV Core-core repulsion = 11236.769993 eV Total energy + Delta-G solvation = -2407.327505 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.78146 -39.60699 -33.49984 -32.71040 -30.36664 -29.58677 -26.49041 -25.09171 -24.61439 -20.20968 -19.51311 -19.45177 -18.05100 -17.27518 -16.37335 -15.78136 -14.56958 -14.00568 -13.58343 -13.43501 -13.24094 -12.98969 -12.71560 -12.08592 -11.99111 -11.42207 -11.16826 -10.66456 -10.23478 -9.63569 -9.45471 -9.38847 -8.92365 -8.81889 -8.35900 -7.77409 -7.53435 -6.84986 -4.22952 0.73499 1.39750 1.71018 2.82668 3.29195 3.61649 3.63611 4.02559 4.24499 4.29931 4.43325 4.67538 5.09011 5.17109 5.28555 5.55420 5.63244 5.75627 5.78591 6.15928 6.50431 7.10856 7.13411 7.56112 7.77953 7.97018 8.35354 8.68611 8.80538 9.21336 9.90494 10.52329 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.045294 B = 0.006262 C = 0.006093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.032892 B = 4470.532187 C = 4594.452397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.049 3.951 3 Si 1.107 2.893 4 H -0.287 1.287 5 H -0.262 1.262 6 H -0.315 1.315 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.192 3.808 10 C -0.281 4.281 11 C 0.017 3.983 12 C 0.030 3.970 13 C 0.083 3.917 14 C -0.254 4.254 15 S 0.095 5.905 16 C 0.026 3.974 17 N -0.456 5.456 18 N -0.418 5.418 19 H 0.419 0.581 20 N -0.411 5.411 21 H 0.276 0.724 22 H 0.122 0.878 23 H 0.096 0.904 24 H 0.082 0.918 25 H 0.177 0.823 26 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.094 -8.924 4.847 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.168 4.168 3 Si 0.937 3.063 4 H -0.214 1.214 5 H -0.188 1.188 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.092 0.908 9 C 0.045 3.955 10 C -0.312 4.312 11 C -0.112 4.112 12 C -0.012 4.012 13 C -0.049 4.049 14 C -0.393 4.393 15 S 0.347 5.653 16 C -0.273 4.273 17 N -0.170 5.170 18 N -0.124 5.124 19 H 0.259 0.741 20 N -0.248 5.248 21 H 0.087 0.913 22 H 0.140 0.860 23 H 0.115 0.885 24 H 0.100 0.900 25 H 0.195 0.805 26 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 15.873 -6.537 5.849 18.136 hybrid contribution 0.306 -2.139 -0.702 2.272 sum 16.179 -8.675 5.147 19.066 Atomic orbital electron populations 1.70647 1.07803 1.31999 1.37384 1.27069 0.95544 1.04610 0.89546 0.82902 0.74020 0.71445 0.77891 1.21383 1.18760 1.24486 1.19628 0.90055 0.96087 1.48839 0.90849 1.19484 0.94176 0.87695 0.94118 1.21248 0.92047 1.00045 1.17857 1.20529 0.95433 0.86839 1.08392 1.18569 0.94586 0.97379 0.90661 1.20312 1.00002 0.90138 0.94448 1.26794 1.13650 0.99470 0.99343 1.83885 1.67521 1.12742 1.01172 1.28384 1.03876 0.93007 1.02050 1.66072 1.14448 1.38733 0.97699 1.42805 1.07707 1.06872 1.54987 0.74107 1.73326 0.90371 1.26359 1.34705 0.91326 0.85992 0.88545 0.89964 0.80527 0.78654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.64 13.66 55.54 0.76 -24.88 15 2 C 0.05 1.45 5.52 -17.35 -0.10 1.35 15 3 Si 1.11 29.07 26.42 -169.99 -4.49 24.58 15 4 H -0.29 -7.53 7.11 56.52 0.40 -7.13 15 5 H -0.26 -6.79 6.24 56.52 0.35 -6.44 15 6 H -0.31 -8.03 7.11 56.52 0.40 -7.63 15 7 C -0.51 -15.21 9.82 -37.77 -0.37 -15.58 15 8 H 0.07 2.23 8.06 -52.49 -0.42 1.81 15 9 C 0.19 5.38 6.46 -84.72 -0.55 4.83 15 10 C -0.28 -6.75 10.89 -39.17 -0.43 -7.17 15 11 C 0.02 0.34 6.37 -81.92 -0.52 -0.18 15 12 C 0.03 0.44 6.26 -29.04 -0.18 0.26 15 13 C 0.08 1.22 6.06 -84.23 -0.51 0.71 15 14 C -0.25 -3.06 11.07 29.12 0.32 -2.73 15 15 S 0.10 1.00 23.22 -107.50 -2.50 -1.50 15 16 C 0.03 0.32 12.23 51.58 0.63 0.95 15 17 N -0.46 -7.18 10.39 -11.90 -0.12 -7.30 15 18 N -0.42 -9.18 6.86 33.59 0.23 -8.95 15 19 H 0.42 7.67 8.96 -190.44 -1.71 5.96 15 20 N -0.41 -10.92 7.51 32.34 0.24 -10.68 15 21 H 0.28 8.06 8.73 -40.82 -0.36 7.70 15 22 H 0.12 2.73 8.06 -52.49 -0.42 2.31 15 23 H 0.10 1.19 8.03 -51.93 -0.42 0.78 15 24 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.18 1.65 8.06 -52.49 -0.42 1.23 15 26 H 0.20 1.78 8.06 -52.49 -0.42 1.36 15 LS Contribution 249.30 15.07 3.76 3.76 Total: -1.00 -34.71 249.30 -7.26 -41.98 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.44 Total: 0.57 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -1.70 Total: -17.57 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 1.11 Total: -51.81 kcal Atomic # 14 Polarization: 29.07 SS G_CDS: -4.49 Total: 24.58 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.50 Total: -1.50 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.71 -7.26 -41.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074205333.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.953 kcal (2) G-P(sol) polarization free energy of solvation -34.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds