Wall clock time and date at job start Mon Mar 30 2020 03:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34630 * 126.30043 * 2 1 4 4 H 0.97000 * 125.80247 * 0.02562 * 3 2 1 5 5 N 1.39955 * 108.39533 * 180.02562 * 3 2 1 6 6 C 1.30533 * 108.85326 * 0.02562 * 5 3 2 7 7 C 1.37866 * 126.29832 * 180.02562 * 2 1 3 8 8 C 1.47717 * 126.37360 * 359.94505 * 7 2 1 9 9 N 1.29868 * 125.02915 * 179.72515 * 8 7 2 10 10 C 1.33428 * 115.86623 * 179.78700 * 9 8 7 11 11 C 1.41119 * 122.81831 * 180.20026 * 10 9 8 12 12 H 1.07997 * 119.99877 * 180.32291 * 11 10 9 13 13 C 1.39619 * 120.00230 * 0.32091 * 11 10 9 14 14 N 1.31073 * 119.99705 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00234 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47151 * 59.99864 * 15 13 11 17 17 H 1.48497 * 109.47022 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46875 * 300.00075 * 15 13 11 19 19 C 1.37910 * 114.35992 * 0.49404 * 10 9 8 20 20 S 1.70970 * 108.97199 * 359.73956 * 19 10 9 21 21 H 1.09006 * 109.47320 * 89.97468 * 1 2 3 22 22 H 1.09001 * 109.47626 * 209.97284 * 1 2 3 23 23 H 1.08999 * 109.47322 * 329.97607 * 1 2 3 24 24 H 1.08002 * 125.95271 * 179.97438 * 6 5 3 25 25 H 0.96997 * 120.00158 * 179.97438 * 14 13 11 26 26 H 1.07993 * 125.51220 * 179.73475 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3040 1.0850 0.0000 4 1 2.0059 2.0081 0.0004 5 7 3.6358 0.6547 -0.0006 6 6 3.6574 -0.6504 -0.0015 7 6 2.3231 -1.1111 -0.0005 8 6 1.8831 -2.5213 0.0000 9 7 2.6763 -3.5496 -0.0056 10 6 2.0811 -4.7438 0.0005 11 6 2.8014 -5.9573 -0.0002 12 1 2.2728 -6.8990 -0.0003 13 6 4.1975 -5.9405 -0.0006 14 7 4.8391 -4.7976 0.0000 15 14 5.1510 -7.5468 -0.0022 16 1 4.8012 -8.3289 -1.2152 17 1 6.6075 -7.2579 -0.0019 18 1 4.8020 -8.3307 1.2098 19 6 0.7030 -4.6925 0.0011 20 16 0.2076 -3.0562 0.0008 21 1 -0.3634 0.0005 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8898 0.5142 24 1 4.5420 -1.2700 -0.0025 25 1 5.8090 -4.7858 0.0001 26 1 0.0435 -5.5477 0.0015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074205348.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:06 Heat of formation + Delta-G solvation = 81.667234 kcal Electronic energy + Delta-G solvation = -13735.208503 eV Core-core repulsion = 11326.956903 eV Total energy + Delta-G solvation = -2408.251600 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14783 -39.43264 -35.14887 -33.65917 -32.91334 -30.45250 -28.10666 -27.49969 -24.71303 -22.81493 -21.77942 -20.02205 -19.27764 -17.95029 -16.97173 -16.88089 -16.07020 -15.44755 -15.19590 -14.71702 -14.49559 -14.40745 -13.65363 -13.41644 -13.26297 -12.99839 -12.87751 -12.54526 -12.15792 -11.82114 -11.35649 -11.25275 -10.59507 -10.31397 -9.84054 -9.53388 -8.70058 -8.39989 -6.34064 0.15774 0.89819 1.08110 1.39212 1.40011 1.52068 1.78772 1.83812 1.94760 2.26528 2.59016 3.48719 3.56566 3.74789 4.10831 4.33749 4.68619 4.72024 4.84430 5.06602 5.13300 5.18859 5.38178 5.47844 5.63266 6.20365 6.36381 6.61113 6.64677 6.93500 7.78345 8.48733 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.033533 B = 0.008305 C = 0.006680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.804777 B = 3370.830600 C = 4190.489895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.132 3.868 3 N -0.448 5.448 4 H 0.459 0.541 5 N -0.315 5.315 6 C 0.090 3.910 7 C -0.203 4.203 8 C 0.126 3.874 9 N -0.447 5.447 10 C 0.201 3.799 11 C -0.476 4.476 12 H 0.081 0.919 13 C 0.028 3.972 14 N -0.783 5.783 15 Si 0.989 3.011 16 H -0.261 1.261 17 H -0.267 1.267 18 H -0.261 1.261 19 C -0.508 4.508 20 S 0.062 5.938 21 H 0.107 0.893 22 H 0.079 0.921 23 H 0.119 0.881 24 H 0.178 0.822 25 H 0.280 0.720 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 10.161 -0.031 11.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 N -0.158 5.158 4 H 0.307 0.693 5 N -0.137 5.137 6 C -0.098 4.098 7 C -0.218 4.218 8 C -0.154 4.154 9 N -0.163 5.163 10 C 0.078 3.922 11 C -0.510 4.510 12 H 0.099 0.901 13 C -0.191 4.191 14 N -0.406 5.406 15 Si 0.809 3.191 16 H -0.185 1.185 17 H -0.191 1.191 18 H -0.185 1.185 19 C -0.647 4.647 20 S 0.313 5.687 21 H 0.125 0.875 22 H 0.098 0.902 23 H 0.138 0.862 24 H 0.195 0.805 25 H 0.090 0.910 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.204 11.796 -0.038 12.893 hybrid contribution 0.471 -2.296 0.018 2.344 sum -4.732 9.500 -0.020 10.614 Atomic orbital electron populations 1.20826 0.83772 1.05482 1.05686 1.21732 0.95729 0.86040 0.96845 1.45952 1.03145 1.08752 1.57952 0.69253 1.77074 0.97545 1.12392 1.26715 1.23929 0.97854 0.91390 0.96654 1.18182 0.93538 0.88873 1.21254 1.25561 0.91718 0.95483 1.02655 1.67711 1.34584 0.97861 1.16152 1.18398 0.88972 0.91576 0.93260 1.19244 0.92141 0.91977 1.47613 0.90090 1.26859 0.98678 1.01481 0.92075 1.70221 1.09447 1.28227 1.32721 0.85171 0.76948 0.77104 0.79867 1.18508 1.19077 1.18517 1.25646 0.98124 1.00394 1.40494 1.81666 1.10945 0.99378 1.76710 0.87492 0.90225 0.86232 0.80539 0.91024 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 9.67 71.23 0.69 -1.24 15 2 C 0.13 3.76 7.30 42.04 0.31 4.07 15 3 N -0.45 -11.19 7.31 -46.71 -0.34 -11.53 15 4 H 0.46 6.88 8.96 -213.41 -1.91 4.96 15 5 N -0.32 -10.61 12.64 -56.32 -0.71 -11.33 15 6 C 0.09 3.58 11.97 85.60 1.02 4.61 15 7 C -0.20 -8.09 6.13 -20.14 -0.12 -8.21 15 8 C 0.13 6.05 7.42 87.49 0.65 6.70 15 9 N -0.45 -25.49 8.44 -182.63 -1.54 -27.03 15 10 C 0.20 11.86 6.47 39.53 0.26 12.11 15 11 C -0.48 -27.71 9.23 23.31 0.22 -27.50 15 12 H 0.08 4.50 7.84 -2.91 -0.02 4.48 15 13 C 0.03 1.52 5.49 85.14 0.47 1.99 15 14 N -0.78 -43.84 11.69 21.78 0.25 -43.59 15 15 Si 0.99 40.46 29.56 68.60 2.03 42.49 15 16 H -0.26 -10.33 7.11 99.48 0.71 -9.62 15 17 H -0.27 -10.26 7.11 99.48 0.71 -9.55 15 18 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 19 C -0.51 -26.89 10.98 67.74 0.74 -26.14 15 20 S 0.06 2.63 19.79 -56.49 -1.12 1.51 15 21 H 0.11 1.76 8.14 -2.38 -0.02 1.74 15 22 H 0.08 1.89 5.37 -6.55 -0.04 1.86 15 23 H 0.12 1.30 8.14 -2.39 -0.02 1.28 15 24 H 0.18 7.49 8.06 -2.91 -0.02 7.47 15 25 H 0.28 14.19 8.30 -92.71 -0.77 13.42 15 26 H 0.14 6.89 8.06 -2.91 -0.02 6.86 15 Total: -1.00 -71.91 248.28 2.09 -69.82 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -0.71 Total: 13.27 kcal Atomic # 6 Polarization: -37.84 SS G_CDS: 4.23 Total: -33.61 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -2.34 Total: -93.48 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.12 Total: 1.51 kcal Total: -71.91 2.09 -69.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074205348.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.489 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds