Wall clock time and date at job start Mon Mar 30 2020 03:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48491 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47015 * 299.99809 * 3 2 1 6 6 H 1.48494 * 109.47031 * 59.99511 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99973 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.47248 * 179.97438 * 9 7 2 11 11 N 1.40071 * 125.97309 * 269.99834 * 10 9 7 12 12 C 1.31220 * 108.16950 * 179.97438 * 11 10 9 13 13 N 1.39989 * 125.97548 * 179.97438 * 12 11 10 14 14 C 1.40431 * 108.04872 * 359.78491 * 12 11 10 15 15 C 1.34960 * 125.97122 * 90.00048 * 10 9 7 16 16 C 1.50703 * 126.06853 * 359.96266 * 15 10 9 17 17 F 1.39905 * 109.47157 * 90.00056 * 16 15 10 18 18 F 1.39900 * 109.47159 * 330.00356 * 16 15 10 19 19 F 1.39897 * 109.47274 * 210.00047 * 16 15 10 20 20 H 0.96996 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47179 * 59.99980 * 9 7 2 22 22 H 1.09004 * 109.47092 * 299.99783 * 9 7 2 23 23 H 0.97006 * 119.99721 * 359.97438 * 13 12 11 24 24 H 0.96998 * 120.00507 * 179.97438 * 13 12 11 25 25 H 1.08002 * 126.06714 * 180.23347 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7377 -4.2381 -1.1330 12 6 3.5500 -5.1874 -0.7318 13 7 4.2836 -6.0460 -1.5590 14 6 3.5581 -5.1884 0.6725 15 6 2.7182 -4.2152 1.0928 16 6 2.4169 -3.8615 2.5264 17 9 1.3206 -4.6087 2.9705 18 9 2.1193 -2.4976 2.6175 19 9 3.5308 -4.1500 3.3220 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 4.2145 -5.9668 -2.5234 24 1 4.8611 -6.7202 -1.1680 25 1 4.1312 -5.8506 1.3045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086879888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:31 Heat of formation + Delta-G solvation = -72.344560 kcal Electronic energy + Delta-G solvation = -16928.283844 eV Core-core repulsion = 13528.744181 eV Total energy + Delta-G solvation = -3399.539664 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.063 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.68491 -47.26757 -47.07348 -40.62116 -34.71780 -33.13693 -30.68545 -30.42616 -26.66825 -25.45703 -23.00718 -20.58793 -20.19095 -18.10928 -17.76180 -17.58553 -16.69427 -16.18726 -14.97958 -14.56829 -14.46931 -14.18495 -13.99352 -13.93166 -13.62284 -13.34888 -13.24581 -13.01541 -12.43973 -11.83852 -11.46263 -11.22059 -10.84879 -10.59229 -10.29792 -10.03400 -9.57014 -8.64389 -8.43945 -7.39161 -6.25354 -4.32690 2.14286 2.77754 3.22323 3.25665 3.29784 3.36351 3.37314 4.00292 4.28293 4.42017 4.64792 4.83507 5.09040 5.48098 5.87132 6.11144 6.53708 6.85017 6.96729 7.54457 7.71593 7.74025 7.83183 7.88541 8.55008 8.71218 9.33083 10.82535 Molecular weight = 235.06amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.010302 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.353360 B = 2717.137235 C = 3370.197342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.066 0.934 9 C 0.251 3.749 10 N -0.291 5.291 11 N -0.315 5.315 12 C 0.312 3.688 13 N -0.850 5.850 14 C -0.274 4.274 15 C 0.008 3.992 16 C 0.536 3.464 17 F -0.177 7.177 18 F -0.149 7.149 19 F -0.174 7.174 20 H 0.268 0.732 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.400 0.600 24 H 0.405 0.595 25 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -9.425 2.782 11.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.084 0.916 9 C 0.134 3.866 10 N -0.071 5.071 11 N -0.149 5.149 12 C 0.055 3.945 13 N -0.403 5.403 14 C -0.309 4.309 15 C -0.126 4.126 16 C 0.479 3.521 17 F -0.159 7.159 18 F -0.130 7.130 19 F -0.155 7.155 20 H 0.078 0.922 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.228 0.772 24 H 0.234 0.766 25 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.915 -8.492 1.875 9.990 hybrid contribution 0.902 0.341 0.700 1.191 sum 5.817 -8.152 2.575 10.340 Atomic orbital electron populations 1.69923 1.06042 1.27647 1.49183 1.24895 0.94971 0.99424 0.94302 0.86280 0.80048 0.82440 0.77816 1.19529 1.20646 1.20567 1.21230 0.93719 0.89195 1.52858 0.91576 1.19993 0.85992 0.80265 1.00344 1.49100 1.32738 1.25400 0.99875 1.77519 1.17810 1.12081 1.07502 1.19029 0.94054 0.92172 0.89209 1.41133 1.52484 1.39386 1.07301 1.20479 1.10226 1.06654 0.93543 1.20570 1.03308 1.00101 0.88646 1.17366 0.74158 0.75644 0.84885 1.93206 1.55040 1.76940 1.90673 1.93387 1.92819 1.30242 1.96507 1.93169 1.53066 1.93461 1.75817 0.92245 0.92263 0.92568 0.77155 0.76587 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.29 55.43 0.74 -24.44 15 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 3 Si 0.91 21.30 29.54 -169.99 -5.02 16.27 15 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.53 -14.66 8.59 -34.44 -0.30 -14.95 15 8 H 0.07 1.88 7.81 -52.49 -0.41 1.47 15 9 C 0.25 6.46 5.37 -5.19 -0.03 6.43 15 10 N -0.29 -6.78 3.59 -58.32 -0.21 -6.99 15 11 N -0.32 -6.99 12.59 31.41 0.40 -6.59 15 12 C 0.31 5.70 8.46 -154.55 -1.31 4.40 15 13 N -0.85 -10.98 9.15 31.39 0.29 -10.70 15 14 C -0.27 -4.90 10.40 -39.82 -0.41 -5.32 15 15 C 0.01 0.17 6.38 -82.28 -0.53 -0.35 15 16 C 0.54 10.25 3.32 36.01 0.12 10.37 15 17 F -0.18 -3.22 17.30 2.25 0.04 -3.18 15 18 F -0.15 -3.23 14.52 2.25 0.03 -3.20 15 19 F -0.17 -2.96 17.02 2.25 0.04 -2.92 15 20 H 0.27 7.12 8.31 -40.82 -0.34 6.78 15 21 H 0.06 1.60 8.14 -51.93 -0.42 1.18 15 22 H 0.06 1.47 6.98 -51.93 -0.36 1.11 15 23 H 0.40 4.64 8.96 -40.82 -0.37 4.27 15 24 H 0.40 3.87 8.96 -40.82 -0.37 3.51 15 25 H 0.15 2.12 8.06 -52.49 -0.42 1.69 15 LS Contribution 243.53 15.07 3.67 3.67 Total: -1.00 -29.76 243.53 -4.06 -33.83 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -1.48 Total: 1.92 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -2.55 Total: 2.33 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 1.21 Total: -48.73 kcal Atomic # 9 Polarization: -9.41 SS G_CDS: 0.11 Total: -9.30 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.76 -4.06 -33.83 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086879888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.517 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds