Wall clock time and date at job start Mon Mar 30 2020 03:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00292 * 2 1 4 4 H 1.48491 * 109.47483 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47015 * 299.99809 * 3 2 1 6 6 H 1.48494 * 109.47031 * 59.99511 * 3 2 1 7 7 C 1.37878 * 120.00047 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99973 * 0.02562 * 7 2 1 10 10 N 1.46508 * 109.47248 * 179.97438 * 9 7 2 11 11 N 1.40071 * 125.97309 * 269.99834 * 10 9 7 12 12 C 1.31220 * 108.16950 * 179.97438 * 11 10 9 13 13 N 1.39989 * 125.97548 * 179.97438 * 12 11 10 14 14 C 1.40431 * 108.04872 * 359.78491 * 12 11 10 15 15 C 1.34960 * 125.97122 * 90.00048 * 10 9 7 16 16 C 1.50703 * 126.06853 * 359.96266 * 15 10 9 17 17 F 1.39905 * 109.47157 * 90.00056 * 16 15 10 18 18 F 1.39900 * 109.47159 * 330.00356 * 16 15 10 19 19 F 1.39897 * 109.47274 * 210.00047 * 16 15 10 20 20 H 0.96996 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.47179 * 59.99980 * 9 7 2 22 22 H 1.09004 * 109.47092 * 299.99783 * 9 7 2 23 23 H 0.97006 * 119.99721 * 359.97438 * 13 12 11 24 24 H 0.96998 * 120.00507 * 179.97438 * 13 12 11 25 25 H 1.08002 * 126.06714 * 180.23347 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7377 -4.2381 -1.1330 12 6 3.5500 -5.1874 -0.7318 13 7 4.2836 -6.0460 -1.5590 14 6 3.5581 -5.1884 0.6725 15 6 2.7182 -4.2152 1.0928 16 6 2.4169 -3.8615 2.5264 17 9 1.3206 -4.6087 2.9705 18 9 2.1193 -2.4976 2.6175 19 9 3.5308 -4.1500 3.3220 20 1 -0.4850 0.8400 0.0004 21 1 0.6247 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 4.2145 -5.9668 -2.5234 24 1 4.8611 -6.7202 -1.1680 25 1 4.1312 -5.8506 1.3045 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086879888.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:31 Heat of formation + Delta-G solvation = -92.447278 kcal Electronic energy + Delta-G solvation = -16929.155564 eV Core-core repulsion = 13528.744181 eV Total energy + Delta-G solvation = -3400.411383 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.063 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.20456 -48.72636 -48.66601 -42.17146 -36.29004 -34.97638 -32.40913 -31.95893 -28.50057 -27.03135 -24.92063 -22.11126 -21.72683 -19.63083 -19.29980 -19.14482 -18.71567 -17.54959 -16.66861 -16.17983 -15.95590 -15.81459 -15.52395 -15.47109 -15.12070 -14.91213 -14.80612 -14.64235 -14.33407 -13.58222 -13.20096 -13.05273 -12.69418 -12.33212 -12.19933 -11.59002 -11.42863 -10.72976 -10.00018 -8.85283 -8.30695 -6.48714 0.57382 1.21988 1.38042 1.39023 1.51639 1.72228 1.91866 2.34656 2.51756 2.97293 3.04079 3.12903 3.31175 3.96809 4.42804 4.70134 4.80475 4.87264 5.38445 5.51802 5.77536 5.92377 6.46468 6.55202 6.60550 7.21069 7.33204 8.74887 Molecular weight = 235.06amu Principal moments of inertia in cm(-1) A = 0.023696 B = 0.010302 C = 0.008306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.353360 B = 2717.137235 C = 3370.197342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.544 4.544 8 H 0.052 0.948 9 C 0.270 3.730 10 N -0.325 5.325 11 N -0.358 5.358 12 C 0.319 3.681 13 N -0.825 5.825 14 C -0.254 4.254 15 C -0.009 4.009 16 C 0.541 3.459 17 F -0.172 7.172 18 F -0.168 7.168 19 F -0.158 7.158 20 H 0.273 0.727 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.409 0.591 24 H 0.424 0.576 25 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.441 -10.224 3.029 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.179 4.179 3 Si 0.794 3.206 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.582 4.582 8 H 0.071 0.929 9 C 0.152 3.848 10 N -0.105 5.105 11 N -0.193 5.193 12 C 0.061 3.939 13 N -0.381 5.381 14 C -0.289 4.289 15 C -0.141 4.141 16 C 0.485 3.515 17 F -0.153 7.153 18 F -0.149 7.149 19 F -0.139 7.139 20 H 0.082 0.918 21 H 0.051 0.949 22 H 0.062 0.938 23 H 0.239 0.761 24 H 0.257 0.743 25 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.606 -9.342 2.128 11.638 hybrid contribution 0.467 0.413 0.607 0.870 sum 7.073 -8.929 2.735 11.715 Atomic orbital electron populations 1.70008 1.07330 1.28776 1.49643 1.25722 0.95805 1.02677 0.93674 0.85318 0.78572 0.78348 0.78343 1.19544 1.19739 1.19533 1.21351 0.93115 0.90548 1.53172 0.92948 1.19412 0.86122 0.80979 0.98306 1.48712 1.34387 1.26371 1.01058 1.77429 1.19880 1.14020 1.07945 1.19386 0.92960 0.91433 0.90164 1.41162 1.51176 1.38269 1.07474 1.20965 1.08628 1.05535 0.93781 1.21000 1.03869 1.00671 0.88599 1.17236 0.74647 0.74820 0.84794 1.93214 1.54909 1.76613 1.90566 1.93344 1.93053 1.31946 1.96585 1.93197 1.52174 1.93235 1.75298 0.91775 0.94948 0.93844 0.76100 0.74250 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.81 13.29 21.45 0.28 -52.53 15 2 C 0.02 1.22 5.46 84.65 0.46 1.68 15 3 Si 0.97 43.70 29.54 68.60 2.03 45.73 15 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 15 5 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 7 C -0.54 -30.68 8.59 25.60 0.22 -30.46 15 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 15 9 C 0.27 14.45 5.37 85.63 0.46 14.91 15 10 N -0.32 -15.31 3.59 -338.43 -1.22 -16.53 15 11 N -0.36 -15.80 12.59 -54.54 -0.69 -16.49 15 12 C 0.32 10.97 8.46 133.39 1.13 12.10 15 13 N -0.83 -18.59 9.15 -54.61 -0.50 -19.09 15 14 C -0.25 -8.40 10.40 22.11 0.23 -8.17 15 15 C -0.01 -0.37 6.38 41.39 0.26 -0.11 15 16 C 0.54 20.28 3.32 71.24 0.24 20.51 15 17 F -0.17 -6.10 17.30 44.97 0.78 -5.32 15 18 F -0.17 -7.39 14.52 44.97 0.65 -6.74 15 19 F -0.16 -5.06 17.02 44.97 0.77 -4.29 15 20 H 0.27 14.61 8.31 -92.71 -0.77 13.84 15 21 H 0.03 1.86 8.14 -2.38 -0.02 1.84 15 22 H 0.04 2.38 6.98 -2.39 -0.02 2.37 15 23 H 0.41 8.28 8.96 -92.70 -0.83 7.45 15 24 H 0.42 6.32 8.96 -92.71 -0.83 5.49 15 25 H 0.19 4.51 8.06 -2.91 -0.02 4.49 15 Total: -1.00 -64.50 243.53 4.71 -59.79 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -0.39 Total: 5.01 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 3.00 Total: 10.47 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -2.12 Total: -104.64 kcal Atomic # 9 Polarization: -18.55 SS G_CDS: 2.20 Total: -16.36 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.50 4.71 -59.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086879888.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.661 kcal (2) G-P(sol) polarization free energy of solvation -64.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds