Wall clock time and date at job start Mon Mar 30 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30644 * 1 3 3 Si 1.86803 * 119.99954 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00041 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99992 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99791 * 3 2 1 7 7 C 1.40270 * 120.00022 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99661 * 179.97438 * 7 2 1 9 9 C 1.40369 * 119.99779 * 0.28004 * 7 2 1 10 10 N 1.33064 * 126.31426 * 179.71997 * 9 7 2 11 11 C 1.32229 * 109.80315 * 179.97438 * 10 9 7 12 12 C 1.50700 * 125.15926 * 180.02562 * 11 10 9 13 13 C 1.52992 * 109.46937 * 90.00736 * 12 11 10 14 14 C 1.52999 * 109.46956 * 179.97438 * 13 12 11 15 15 F 1.39906 * 109.47372 * 59.99857 * 14 13 12 16 16 F 1.39904 * 109.47233 * 179.97438 * 14 13 12 17 17 F 1.39901 * 109.47223 * 299.99694 * 14 13 12 18 18 N 1.31393 * 109.68187 * 0.02562 * 11 10 9 19 19 N 1.37026 * 126.31903 * 359.40880 * 9 7 2 20 20 H 0.97000 * 127.01390 * 0.02562 * 19 9 7 21 21 H 0.96996 * 120.00314 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46683 * 210.00383 * 12 11 10 23 23 H 1.08993 * 109.47209 * 330.00077 * 12 11 10 24 24 H 1.08998 * 109.47254 * 299.99710 * 13 12 11 25 25 H 1.09002 * 109.47519 * 59.99851 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0465 -1.4001 5 1 1.4379 2.6527 0.7000 6 1 3.5380 1.4402 0.7001 7 6 2.0078 -1.2148 0.0005 8 1 3.0878 -1.2147 0.0001 9 6 1.3059 -2.4304 -0.0049 10 7 1.8404 -3.6489 -0.0103 11 6 0.8811 -4.5589 -0.0138 12 6 1.0994 -6.0500 -0.0196 13 6 1.1732 -6.5603 1.4208 14 6 1.3942 -8.0742 1.4148 15 9 2.5918 -8.3682 0.7540 16 9 1.4623 -8.5408 2.7320 17 9 0.3311 -8.6981 0.7531 18 7 -0.2914 -3.9659 -0.0113 19 7 -0.0560 -2.5812 0.0005 20 1 -0.7216 -1.8757 0.0083 21 1 -0.4850 0.8400 -0.0004 22 1 0.2713 -6.5364 -0.5354 23 1 2.0325 -6.2786 -0.5344 24 1 2.0012 -6.0739 1.9366 25 1 0.2400 -6.3317 1.9356 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086981147.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:17 Heat of formation + Delta-G solvation = -108.399026 kcal Electronic energy + Delta-G solvation = -16070.978273 eV Core-core repulsion = 12669.875170 eV Total energy + Delta-G solvation = -3401.103103 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.063 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.92835 -47.43898 -47.39090 -39.91751 -34.60409 -33.55338 -30.26738 -29.71450 -26.60776 -25.53115 -22.34146 -20.79238 -18.96492 -18.36998 -17.99771 -17.70476 -17.07270 -15.53551 -15.16890 -14.55320 -14.34541 -13.87979 -13.73473 -13.67399 -13.58383 -13.54330 -13.07649 -12.93712 -12.02055 -11.77303 -11.51797 -11.41696 -11.22276 -10.94682 -10.50182 -9.97452 -9.71888 -8.35088 -8.31114 -8.09494 -7.22140 -4.96797 2.77803 2.93550 2.93741 2.99970 3.36275 3.70934 3.91876 4.07726 4.27523 4.32919 4.67260 5.14516 5.25822 5.45950 5.52728 5.78448 5.98592 6.28008 6.83617 6.88644 7.49742 7.94215 8.10624 8.38100 8.46062 9.29277 9.83137 10.02356 Molecular weight = 235.06amu Principal moments of inertia in cm(-1) A = 0.060086 B = 0.005134 C = 0.004958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.883859 B = 5452.698133 C = 5645.945260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.073 3.927 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.104 0.896 9 C 0.411 3.589 10 N -0.627 5.627 11 C 0.208 3.792 12 C -0.014 4.014 13 C -0.155 4.155 14 C 0.453 3.547 15 F -0.184 7.184 16 F -0.189 7.189 17 F -0.185 7.185 18 N -0.402 5.402 19 N -0.506 5.506 20 H 0.440 0.560 21 H 0.294 0.706 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -6.612 2.242 7.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.145 4.145 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.468 4.468 8 H 0.122 0.878 9 C 0.158 3.842 10 N -0.365 5.365 11 C -0.076 4.076 12 C -0.054 4.054 13 C -0.195 4.195 14 C 0.399 3.601 15 F -0.165 7.165 16 F -0.171 7.171 17 F -0.167 7.167 18 N -0.239 5.239 19 N -0.232 5.232 20 H 0.295 0.705 21 H 0.105 0.895 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.131 0.869 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.796 -7.000 2.235 7.391 hybrid contribution -0.121 1.161 0.022 1.168 sum 0.675 -5.839 2.257 6.296 Atomic orbital electron populations 1.68733 1.08058 1.30834 1.39048 1.26076 0.94922 1.02498 0.90969 0.85680 0.79906 0.78075 0.79453 1.19083 1.20023 1.18099 1.18700 0.95532 0.86334 1.46235 0.87798 1.20796 0.81165 0.92798 0.89473 1.70704 1.32068 0.97600 1.36173 1.23004 0.88282 0.95345 1.00939 1.19516 1.03658 0.88606 0.93662 1.22834 1.07520 0.87070 1.02063 1.20720 0.73715 0.92608 0.73040 1.93176 1.47295 1.94893 1.81172 1.93164 1.96147 1.90854 1.36902 1.93168 1.57061 1.85307 1.81164 1.77590 1.22436 0.89608 1.34233 1.48678 1.08103 1.04079 1.62357 0.70535 0.89462 0.89820 0.89208 0.86862 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.69 10.72 55.56 0.60 -19.09 15 2 C 0.07 1.69 5.50 -17.29 -0.10 1.60 15 3 Si 0.95 17.45 29.56 -169.99 -5.03 12.42 15 4 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.28 -4.94 7.11 56.52 0.40 -4.54 15 6 H -0.26 -4.71 7.11 56.52 0.40 -4.30 15 7 C -0.43 -10.99 9.47 -38.02 -0.36 -11.35 15 8 H 0.10 2.57 7.85 -52.49 -0.41 2.16 15 9 C 0.41 11.25 7.67 -155.87 -1.20 10.05 15 10 N -0.63 -16.58 11.24 -10.11 -0.11 -16.69 15 11 C 0.21 4.95 7.34 -157.16 -1.15 3.80 15 12 C -0.01 -0.26 5.60 -27.89 -0.16 -0.41 15 13 C -0.16 -2.34 5.24 -26.74 -0.14 -2.48 15 14 C 0.45 6.26 3.16 37.16 0.12 6.38 15 15 F -0.18 -2.62 16.80 2.25 0.04 -2.58 15 16 F -0.19 -2.60 17.32 2.25 0.04 -2.56 15 17 F -0.19 -2.61 16.80 2.25 0.04 -2.58 15 18 N -0.40 -10.27 12.80 32.35 0.41 -9.85 15 19 N -0.51 -13.48 7.16 31.10 0.22 -13.26 15 20 H 0.44 11.42 6.38 -182.32 -1.16 10.25 15 21 H 0.29 6.21 8.29 -40.82 -0.34 5.88 15 22 H 0.08 1.38 7.80 -51.93 -0.41 0.98 15 23 H 0.09 1.52 7.80 -51.93 -0.41 1.12 15 24 H 0.11 1.72 8.14 -51.93 -0.42 1.29 15 25 H 0.11 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 242.11 15.07 3.65 3.65 Total: -1.00 -27.89 242.11 -5.49 -33.39 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -2.36 Total: 9.57 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -2.98 Total: 7.58 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 1.12 Total: -58.89 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.11 Total: -7.72 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.89 -5.49 -33.39 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086981147.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.014 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds