Wall clock time and date at job start Mon Mar 30 2020 03:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36611 * 126.50725 * 2 1 4 4 C 1.35180 * 107.07244 * 180.02562 * 3 2 1 5 5 N 1.33480 * 108.43384 * 359.73256 * 4 3 2 6 6 C 1.31722 * 109.24180 * 0.43706 * 5 4 3 7 7 C 1.47154 * 125.86933 * 179.82360 * 6 5 4 8 8 N 1.30074 * 125.07154 * 0.03031 * 7 6 5 9 9 C 1.32608 * 115.99209 * 180.20920 * 8 7 6 10 10 C 1.41182 * 122.76369 * 179.75579 * 9 8 7 11 11 H 1.07992 * 120.00362 * 188.14420 * 10 9 8 12 12 C 1.39611 * 119.99729 * 8.15073 * 10 9 8 13 13 N 1.31068 * 119.99870 * 194.50677 * 12 10 9 14 14 Si 1.86801 * 120.00012 * 14.22900 * 12 10 9 15 15 H 1.48500 * 109.47102 * 270.27649 * 14 12 10 16 16 H 1.48499 * 109.47170 * 30.27808 * 14 12 10 17 17 H 1.48504 * 109.47053 * 150.27455 * 14 12 10 18 18 C 1.38100 * 114.47388 * 359.49822 * 9 8 7 19 19 S 1.70993 * 108.90388 * 0.25941 * 18 9 8 20 20 H 1.09004 * 109.47173 * 270.00371 * 1 2 3 21 21 H 1.08993 * 109.47070 * 30.00373 * 1 2 3 22 22 H 1.08997 * 109.46990 * 150.00614 * 1 2 3 23 23 H 1.07999 * 126.46232 * 0.02562 * 3 2 1 24 24 H 1.08001 * 125.77992 * 180.02562 * 4 3 2 25 25 H 0.97001 * 120.00244 * 354.50830 * 13 12 10 26 26 H 1.08004 * 125.55207 * 180.28898 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2778 1.0981 0.0000 4 6 3.5526 0.6483 -0.0006 5 7 3.5293 -0.6863 0.0050 6 6 2.2782 -1.0987 -0.0004 7 6 1.8326 -2.5011 -0.0006 8 7 2.6209 -3.5358 0.0051 9 6 2.0249 -4.7204 -0.0006 10 6 2.7421 -5.9365 -0.0007 11 1 2.2196 -6.8716 -0.1379 12 6 4.1269 -5.9302 0.1768 13 7 4.8282 -7.0018 -0.1019 14 14 4.9811 -4.3919 0.8040 15 1 5.3683 -3.5366 -0.3466 16 1 4.0579 -3.6398 1.6912 17 1 6.1964 -4.7763 1.5661 18 6 0.6450 -4.6666 -0.0008 19 16 0.1544 -3.0286 -0.0007 20 1 -0.3634 0.0001 1.0277 21 1 -0.3633 0.8899 -0.5139 22 1 -0.3633 -0.8900 -0.5137 23 1 1.9615 2.1307 0.0004 24 1 4.4396 1.2644 -0.0003 25 1 4.3788 -7.8234 -0.3549 26 1 -0.0167 -5.5202 -0.0006 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122770760.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:55 Heat of formation + Delta-G solvation = 71.066969 kcal Electronic energy + Delta-G solvation = -13942.800821 eV Core-core repulsion = 11534.089559 eV Total energy + Delta-G solvation = -2408.711262 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.94561 -40.18144 -35.52219 -35.07135 -32.48974 -29.90756 -28.15670 -27.82759 -25.45919 -22.48556 -21.84292 -20.74449 -19.82687 -18.60568 -17.62908 -16.86450 -16.50063 -15.58146 -15.39132 -15.16628 -14.90487 -14.47959 -14.09470 -13.94672 -13.78914 -13.56705 -12.88416 -12.40115 -12.00507 -11.81806 -11.24559 -10.95529 -10.73346 -10.46114 -10.19454 -9.89708 -9.38773 -8.94494 -6.68396 -0.37103 0.45800 1.06451 1.29694 1.50400 1.51429 1.63660 1.91952 1.98990 2.34775 2.37193 3.11713 3.20351 3.88299 3.91720 4.33226 4.35574 4.56248 4.63591 4.65331 4.88457 5.06908 5.23030 5.41442 5.74677 5.92495 6.04242 6.07769 6.60839 7.00435 7.19742 7.97616 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.029791 B = 0.010824 C = 0.008068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.651400 B = 2586.296335 C = 3469.646141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.441 5.441 3 C -0.002 4.002 4 C -0.057 4.057 5 N -0.496 5.496 6 C 0.218 3.782 7 C 0.110 3.890 8 N -0.490 5.490 9 C 0.193 3.807 10 C -0.516 4.516 11 H 0.067 0.933 12 C 0.024 3.976 13 N -0.843 5.843 14 Si 1.157 2.843 15 H -0.287 1.287 16 H -0.285 1.285 17 H -0.308 1.308 18 C -0.464 4.464 19 S 0.172 5.828 20 H 0.103 0.897 21 H 0.140 0.860 22 H 0.077 0.923 23 H 0.241 0.759 24 H 0.199 0.801 25 H 0.280 0.720 26 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 18.839 0.698 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.124 5.124 3 C -0.139 4.139 4 C -0.208 4.208 5 N -0.217 5.217 6 C -0.041 4.041 7 C -0.166 4.166 8 N -0.212 5.212 9 C 0.069 3.931 10 C -0.551 4.551 11 H 0.085 0.915 12 C -0.191 4.191 13 N -0.468 5.468 14 Si 0.987 3.013 15 H -0.214 1.214 16 H -0.213 1.213 17 H -0.239 1.239 18 C -0.603 4.603 19 S 0.422 5.578 20 H 0.121 0.879 21 H 0.158 0.842 22 H 0.096 0.904 23 H 0.257 0.743 24 H 0.216 0.784 25 H 0.091 0.909 26 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.097 19.310 0.991 21.369 hybrid contribution -1.498 -2.134 -0.543 2.664 sum -10.596 17.176 0.448 20.186 Atomic orbital electron populations 1.22674 0.73683 1.06360 1.06066 1.45724 1.09128 1.05135 1.52428 1.23702 0.89868 0.93616 1.06708 1.23071 0.99122 0.89579 1.09033 1.70415 1.19065 1.14561 1.17625 1.19612 0.86211 0.85805 1.12474 1.24242 0.94140 0.92452 1.05728 1.66114 1.37252 0.98955 1.18928 1.18045 0.90272 0.90179 0.94648 1.19977 0.94674 0.92208 1.48204 0.91504 1.27980 0.95508 1.05139 0.90493 1.70731 1.40037 1.02987 1.33018 0.82020 0.72291 0.69578 0.77387 1.21433 1.21274 1.23856 1.25989 0.97747 1.01541 1.35043 1.81639 1.05269 0.98107 1.72784 0.87909 0.84223 0.90431 0.74328 0.78403 0.90890 0.82778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 10.43 127.77 1.33 2.15 15 2 N -0.44 -11.30 3.19 -539.20 -1.72 -13.02 15 3 C 0.00 -0.04 11.58 83.24 0.96 0.92 15 4 C -0.06 -1.59 11.84 83.74 0.99 -0.60 15 5 N -0.50 -20.63 11.28 -189.70 -2.14 -22.77 15 6 C 0.22 8.56 7.84 136.17 1.07 9.63 15 7 C 0.11 5.01 7.42 87.30 0.65 5.66 15 8 N -0.49 -26.88 5.57 -183.35 -1.02 -27.90 15 9 C 0.19 10.83 6.17 39.72 0.24 11.07 15 10 C -0.52 -31.29 9.61 23.32 0.22 -31.07 15 11 H 0.07 4.10 8.06 -2.91 -0.02 4.08 15 12 C 0.02 1.48 5.51 85.14 0.47 1.95 15 13 N -0.84 -50.92 13.67 21.78 0.30 -50.62 15 14 Si 1.16 64.00 26.12 68.60 1.79 65.80 15 15 H -0.29 -16.34 7.11 99.48 0.71 -15.63 15 16 H -0.29 -16.06 6.44 99.48 0.64 -15.42 15 17 H -0.31 -16.12 7.11 99.48 0.71 -15.42 15 18 C -0.46 -22.19 10.99 67.79 0.75 -21.44 15 19 S 0.17 6.26 19.68 -56.49 -1.11 5.14 15 20 H 0.10 1.26 8.14 -2.38 -0.02 1.24 15 21 H 0.14 0.87 8.14 -2.39 -0.02 0.85 15 22 H 0.08 1.44 5.23 -8.92 -0.05 1.39 15 23 H 0.24 1.68 8.06 -2.91 -0.02 1.66 15 24 H 0.20 4.13 8.06 -2.91 -0.02 4.11 15 25 H 0.28 16.32 8.73 -92.71 -0.81 15.51 15 26 H 0.15 6.99 8.06 -2.91 -0.02 6.97 15 Total: -1.00 -79.61 244.03 3.85 -75.76 By element: Atomic # 1 Polarization: -11.73 SS G_CDS: 1.07 Total: -10.66 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: 6.69 Total: -21.72 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.58 Total: -114.31 kcal Atomic # 14 Polarization: 64.00 SS G_CDS: 1.79 Total: 65.80 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.11 Total: 5.14 kcal Total: -79.61 3.85 -75.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122770760.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.824 kcal (2) G-P(sol) polarization free energy of solvation -79.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds