Wall clock time and date at job start Mon Mar 30 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99798 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00044 * 3 2 1 7 7 C 1.38695 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34705 * 119.99602 * 0.02562 * 7 2 1 10 10 N 1.21801 * 116.99965 * 179.97438 * 9 7 2 11 11 C 1.29649 * 120.00164 * 180.02562 * 10 9 7 12 12 C 1.47379 * 120.00095 * 180.02562 * 11 10 9 13 13 C 1.39773 * 120.09250 * 359.97438 * 12 11 10 14 14 C 1.37803 * 119.98753 * 180.02562 * 13 12 11 15 15 C 1.38819 * 120.23579 * 359.97438 * 14 13 12 16 16 C 1.39516 * 120.07118 * 0.02562 * 15 14 13 17 17 C 1.38166 * 119.99079 * 359.70802 * 16 15 14 18 18 O 1.36537 * 108.59729 * 180.02562 * 16 15 14 19 19 C 1.43978 * 105.46885 * 342.68447 * 18 16 15 20 20 O 1.36437 * 131.34420 * 180.02562 * 15 14 13 21 21 H 0.97005 * 120.00078 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.99909 * 0.02562 * 11 10 9 23 23 H 1.08005 * 120.00739 * 359.97438 * 13 12 11 24 24 H 1.08000 * 119.88317 * 179.97438 * 14 13 12 25 25 H 1.08004 * 120.04620 * 180.27684 * 17 16 15 26 26 H 1.08997 * 110.56046 * 268.63195 * 19 18 16 27 27 H 1.08993 * 110.56970 * 145.77191 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4402 0.7000 7 6 2.0089 -1.2011 0.0005 8 1 3.0889 -1.2011 0.0001 9 8 1.3353 -2.3677 0.0005 10 7 1.9987 -3.3892 0.0005 11 6 1.4101 -4.5444 0.0000 12 6 2.2128 -5.7804 0.0006 13 6 3.6087 -5.7095 0.0011 14 6 4.3571 -6.8666 0.0011 15 6 3.7297 -8.1049 0.0011 16 6 2.3368 -8.1828 0.0006 17 6 1.5804 -7.0266 0.0062 18 8 1.9743 -9.4992 0.0013 19 6 3.1497 -10.2214 -0.4107 20 8 4.2361 -9.3718 0.0016 21 1 -0.4850 0.8401 -0.0004 22 1 0.3316 -4.6009 -0.0008 23 1 4.1008 -4.7480 0.0007 24 1 5.4357 -6.8099 0.0011 25 1 0.5020 -7.0859 0.0103 26 1 3.1577 -10.3544 -1.4925 27 1 3.2038 -11.1854 0.0950 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000206734263.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:19 Heat of formation + Delta-G solvation = -7.581681 kcal Electronic energy + Delta-G solvation = -15261.024984 eV Core-core repulsion = 12373.857638 eV Total energy + Delta-G solvation = -2887.167346 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.87641 -40.11823 -37.57009 -36.08420 -33.50335 -31.96206 -30.27614 -29.02217 -25.98628 -25.11681 -23.15308 -22.51623 -20.60847 -18.58169 -17.70238 -17.58402 -17.17891 -16.00143 -15.84173 -14.85941 -14.65053 -14.49377 -14.22212 -13.88335 -13.59946 -12.94996 -12.80225 -12.67888 -12.07631 -11.63808 -11.25718 -10.93400 -10.88581 -10.67145 -10.55470 -9.46077 -8.77616 -8.49370 -8.26796 -7.23617 -6.66142 -4.21274 1.28180 1.57300 2.87644 3.02379 3.06478 3.12851 3.31938 3.58696 3.81024 4.25677 4.70379 4.77727 4.78130 4.91134 4.95879 5.37888 5.40026 5.64295 5.74261 5.89468 6.26531 6.40067 6.49752 6.74788 6.85269 6.97146 7.12227 7.41562 7.77700 8.21047 8.82835 10.09660 10.56005 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.073816 B = 0.004401 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.232675 B = 6360.205688 C = 6717.037823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.376 4.376 8 H 0.096 0.904 9 O 0.064 5.936 10 N -0.341 5.341 11 C -0.092 4.092 12 C 0.039 3.961 13 C -0.112 4.112 14 C -0.089 4.089 15 C -0.008 4.008 16 C 0.036 3.964 17 C -0.113 4.113 18 O -0.314 6.314 19 C 0.214 3.786 20 O -0.315 6.315 21 H 0.276 0.724 22 H 0.100 0.900 23 H 0.142 0.858 24 H 0.129 0.871 25 H 0.133 0.867 26 H 0.077 0.923 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.344 -12.003 -1.045 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.166 4.166 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.455 4.455 8 H 0.114 0.886 9 O -0.016 6.016 10 N -0.043 5.043 11 C -0.277 4.277 12 C 0.037 3.963 13 C -0.132 4.132 14 C -0.108 4.108 15 C -0.052 4.052 16 C -0.007 4.007 17 C -0.134 4.134 18 O -0.231 6.231 19 C 0.102 3.898 20 O -0.232 6.232 21 H 0.086 0.914 22 H 0.117 0.883 23 H 0.160 0.840 24 H 0.147 0.853 25 H 0.150 0.850 26 H 0.095 0.905 27 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.880 -11.963 -0.934 13.362 hybrid contribution -0.467 0.295 -0.083 0.559 sum 5.412 -11.668 -1.017 12.903 Atomic orbital electron populations 1.70033 1.06078 1.28513 1.44303 1.25428 0.96059 0.99165 0.95941 0.85486 0.78838 0.78836 0.78909 1.19634 1.20076 1.18914 1.21605 0.92265 0.78695 1.52970 0.88587 1.83320 1.35235 1.10039 1.72987 1.69942 1.35115 0.94531 1.04757 1.22430 0.95989 0.88117 1.21134 1.18016 0.92232 0.90334 0.95710 1.21080 0.93071 0.97687 1.01391 1.19937 1.00126 0.87808 1.02933 1.19745 0.90880 0.85965 1.08657 1.19512 0.92110 0.84547 1.04569 1.19874 0.99780 0.87607 1.06111 1.87320 1.35505 1.15091 1.85156 1.25467 0.71605 0.93094 0.99609 1.87263 1.35751 1.14790 1.85378 0.91430 0.88292 0.84021 0.85330 0.84952 0.90518 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.59 13.67 55.48 0.76 -22.83 15 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 15 3 Si 0.96 19.43 29.55 -169.99 -5.02 14.40 15 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 15 7 C -0.38 -10.17 10.14 30.90 0.31 -9.86 15 8 H 0.10 2.46 7.83 -52.49 -0.41 2.04 15 9 O 0.06 1.79 9.89 15.13 0.15 1.94 15 10 N -0.34 -8.51 9.63 32.12 0.31 -8.20 15 11 C -0.09 -2.04 10.76 -14.75 -0.16 -2.20 15 12 C 0.04 0.73 5.87 -105.04 -0.62 0.12 15 13 C -0.11 -1.99 9.57 -39.17 -0.37 -2.37 15 14 C -0.09 -1.41 10.04 -39.53 -0.40 -1.81 15 15 C -0.01 -0.13 7.16 -38.89 -0.28 -0.41 15 16 C 0.04 0.61 7.14 -39.13 -0.28 0.33 15 17 C -0.11 -1.94 9.80 -39.04 -0.38 -2.32 15 18 O -0.31 -4.69 11.41 -45.81 -0.52 -5.21 15 19 C 0.21 2.43 8.89 101.05 0.90 3.32 15 20 O -0.32 -4.61 11.40 -45.48 -0.52 -5.13 15 21 H 0.28 6.92 8.31 -40.82 -0.34 6.58 15 22 H 0.10 2.14 8.06 -52.49 -0.42 1.72 15 23 H 0.14 2.55 7.55 -52.48 -0.40 2.15 15 24 H 0.13 1.70 8.06 -52.49 -0.42 1.27 15 25 H 0.13 2.04 8.06 -52.48 -0.42 1.62 15 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.12 0.96 8.14 -51.93 -0.42 0.53 15 LS Contribution 255.85 15.07 3.86 3.86 Total: -1.00 -29.59 255.85 -4.42 -34.01 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -2.06 Total: 1.37 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.37 Total: -14.21 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 1.07 Total: -31.03 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.89 Total: -8.39 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.59 -4.42 -34.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206734263.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.428 kcal (2) G-P(sol) polarization free energy of solvation -29.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds