Wall clock time and date at job start Mon Mar 30 2020 03:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31536 * 1 3 3 Si 1.86800 * 119.99886 * 2 1 4 4 H 1.48504 * 109.47118 * 269.99795 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99798 * 3 2 1 6 6 H 1.48504 * 109.47104 * 150.00044 * 3 2 1 7 7 C 1.38695 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00301 * 179.97438 * 7 2 1 9 9 O 1.34705 * 119.99602 * 0.02562 * 7 2 1 10 10 N 1.21801 * 116.99965 * 179.97438 * 9 7 2 11 11 C 1.29649 * 120.00164 * 180.02562 * 10 9 7 12 12 C 1.47379 * 120.00095 * 180.02562 * 11 10 9 13 13 C 1.39773 * 120.09250 * 359.97438 * 12 11 10 14 14 C 1.37803 * 119.98753 * 180.02562 * 13 12 11 15 15 C 1.38819 * 120.23579 * 359.97438 * 14 13 12 16 16 C 1.39516 * 120.07118 * 0.02562 * 15 14 13 17 17 C 1.38166 * 119.99079 * 359.70802 * 16 15 14 18 18 O 1.36537 * 108.59729 * 180.02562 * 16 15 14 19 19 C 1.43978 * 105.46885 * 342.68447 * 18 16 15 20 20 O 1.36437 * 131.34420 * 180.02562 * 15 14 13 21 21 H 0.97005 * 120.00078 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.99909 * 0.02562 * 11 10 9 23 23 H 1.08005 * 120.00739 * 359.97438 * 13 12 11 24 24 H 1.08000 * 119.88317 * 179.97438 * 14 13 12 25 25 H 1.08004 * 120.04620 * 180.27684 * 17 16 15 26 26 H 1.08997 * 110.56046 * 268.63195 * 19 18 16 27 27 H 1.08993 * 110.56970 * 145.77191 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2493 1.6178 0.0000 4 1 2.4969 2.0464 -1.4001 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4402 0.7000 7 6 2.0089 -1.2011 0.0005 8 1 3.0889 -1.2011 0.0001 9 8 1.3353 -2.3677 0.0005 10 7 1.9987 -3.3892 0.0005 11 6 1.4101 -4.5444 0.0000 12 6 2.2128 -5.7804 0.0006 13 6 3.6087 -5.7095 0.0011 14 6 4.3571 -6.8666 0.0011 15 6 3.7297 -8.1049 0.0011 16 6 2.3368 -8.1828 0.0006 17 6 1.5804 -7.0266 0.0062 18 8 1.9743 -9.4992 0.0013 19 6 3.1497 -10.2214 -0.4107 20 8 4.2361 -9.3718 0.0016 21 1 -0.4850 0.8401 -0.0004 22 1 0.3316 -4.6009 -0.0008 23 1 4.1008 -4.7480 0.0007 24 1 5.4357 -6.8099 0.0011 25 1 0.5020 -7.0859 0.0103 26 1 3.1577 -10.3544 -1.4925 27 1 3.2038 -11.1854 0.0950 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000206734263.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:19 Heat of formation + Delta-G solvation = -26.746883 kcal Electronic energy + Delta-G solvation = -15261.856049 eV Core-core repulsion = 12373.857638 eV Total energy + Delta-G solvation = -2887.998411 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.06452 -41.89884 -38.95438 -37.25174 -35.32007 -33.71653 -31.64468 -30.48614 -27.48409 -26.49514 -24.68845 -23.84966 -22.14032 -20.46940 -19.17371 -18.83708 -18.36551 -17.51072 -17.15712 -16.70692 -16.36985 -16.12011 -15.42819 -15.30383 -14.83198 -14.39217 -13.96188 -13.88097 -13.72729 -13.20738 -12.85232 -12.72098 -12.16894 -12.13815 -12.05770 -11.16648 -10.37262 -10.33833 -9.69591 -8.78383 -8.55069 -6.23128 -0.15751 0.24089 1.39104 1.39567 1.57777 1.62124 1.84642 2.13661 2.52219 2.74941 2.99740 3.08710 3.49243 3.86734 3.94606 4.10014 4.22375 4.32422 4.33320 4.59437 4.72285 5.05369 5.07887 5.13180 5.32588 5.42371 5.51741 5.89136 6.14739 6.38564 6.91294 8.20905 8.71237 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.073816 B = 0.004401 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 379.232675 B = 6360.205688 C = 6717.037823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.012 4.012 3 Si 1.032 2.968 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.406 4.406 8 H 0.097 0.903 9 O -0.010 6.010 10 N -0.359 5.359 11 C -0.040 4.040 12 C 0.001 3.999 13 C -0.104 4.104 14 C -0.090 4.090 15 C 0.010 3.990 16 C 0.028 3.972 17 C -0.100 4.100 18 O -0.322 6.322 19 C 0.204 3.796 20 O -0.320 6.320 21 H 0.279 0.721 22 H 0.101 0.899 23 H 0.135 0.865 24 H 0.158 0.842 25 H 0.147 0.853 26 H 0.103 0.897 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.992 -14.623 -1.195 16.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.213 4.213 3 Si 0.850 3.150 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.484 4.484 8 H 0.114 0.886 9 O -0.074 6.074 10 N -0.073 5.073 11 C -0.232 4.232 12 C 0.000 4.000 13 C -0.124 4.124 14 C -0.108 4.108 15 C -0.035 4.035 16 C -0.016 4.016 17 C -0.120 4.120 18 O -0.239 6.239 19 C 0.093 3.907 20 O -0.237 6.237 21 H 0.089 0.911 22 H 0.118 0.882 23 H 0.153 0.847 24 H 0.176 0.824 25 H 0.165 0.835 26 H 0.121 0.879 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 7.508 -14.488 -1.089 16.354 hybrid contribution -0.872 0.343 -0.051 0.939 sum 6.635 -14.145 -1.140 15.666 Atomic orbital electron populations 1.70149 1.07940 1.29612 1.47241 1.26672 0.97013 1.02579 0.95008 0.84415 0.77611 0.73596 0.79404 1.18583 1.19209 1.17835 1.21932 0.92541 0.79418 1.54476 0.88575 1.83349 1.35655 1.10607 1.77816 1.69934 1.35599 0.94662 1.07097 1.23138 0.96807 0.88719 1.14488 1.17964 0.92756 0.89668 0.99634 1.21116 0.92670 0.98383 1.00280 1.20121 1.01518 0.86945 1.02209 1.19987 0.90901 0.86848 1.05749 1.19556 0.92268 0.85276 1.04532 1.19955 1.00694 0.87190 1.04211 1.87323 1.37171 1.14144 1.85285 1.26137 0.69283 0.93336 1.01903 1.87275 1.37054 1.14117 1.85235 0.91137 0.88192 0.84689 0.82405 0.83492 0.87918 0.81788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.21 13.67 21.62 0.30 -52.92 15 2 C -0.01 -0.67 5.49 84.85 0.47 -0.21 15 3 Si 1.03 41.00 29.55 68.60 2.03 43.03 15 4 H -0.26 -9.83 7.11 99.48 0.71 -9.13 15 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 6 H -0.25 -9.53 7.11 99.48 0.71 -8.82 15 7 C -0.41 -23.27 10.14 67.93 0.69 -22.58 15 8 H 0.10 5.20 7.83 -2.91 -0.02 5.18 15 9 O -0.01 -0.62 9.89 64.05 0.63 0.01 15 10 N -0.36 -18.62 9.63 -52.30 -0.50 -19.12 15 11 C -0.04 -1.78 10.76 87.42 0.94 -0.83 15 12 C 0.00 0.04 5.87 -20.13 -0.12 -0.08 15 13 C -0.10 -3.53 9.57 22.54 0.22 -3.31 15 14 C -0.09 -2.54 10.04 22.31 0.22 -2.31 15 15 C 0.01 0.30 7.16 22.72 0.16 0.46 15 16 C 0.03 0.83 7.14 22.56 0.16 0.99 15 17 C -0.10 -3.18 9.80 22.62 0.22 -2.96 15 18 O -0.32 -8.32 11.41 -76.48 -0.87 -9.19 15 19 C 0.20 3.61 8.89 113.37 1.01 4.61 15 20 O -0.32 -7.91 11.40 -75.31 -0.86 -8.77 15 21 H 0.28 14.78 8.31 -92.70 -0.77 14.01 15 22 H 0.10 4.37 8.06 -2.91 -0.02 4.35 15 23 H 0.14 4.77 7.55 -2.91 -0.02 4.75 15 24 H 0.16 3.54 8.06 -2.91 -0.02 3.51 15 25 H 0.15 4.18 8.06 -2.91 -0.02 4.15 15 26 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 27 H 0.17 1.60 8.14 -2.39 -0.02 1.58 15 Total: -1.00 -67.54 255.85 5.89 -61.66 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.20 Total: 11.51 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.97 Total: -26.21 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -0.21 Total: -72.04 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -1.10 Total: -17.94 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -67.54 5.89 -61.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000206734263.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.909 kcal (2) G-P(sol) polarization free energy of solvation -67.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds