Wall clock time and date at job start Mon Mar 30 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32239 * 122.56038 * 2 1 4 4 S 1.75396 * 111.13489 * 179.97438 * 3 2 1 5 5 C 1.75670 * 92.07645 * 0.02562 * 4 3 2 6 6 C 1.38939 * 109.90369 * 359.75264 * 5 4 3 7 7 C 1.47377 * 117.92319 * 180.27236 * 6 5 4 8 8 O 1.21837 * 119.62340 * 180.21036 * 7 6 5 9 9 N 1.34091 * 120.74870 * 0.22835 * 7 6 5 10 10 H 0.96994 * 118.82678 * 179.97438 * 9 7 6 11 11 C 1.35294 * 122.34801 * 359.95347 * 9 7 6 12 12 C 1.39007 * 121.02131 * 359.55387 * 11 9 7 13 13 C 1.41050 * 120.36560 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00015 * 205.61727 * 13 12 11 15 15 C 1.39664 * 119.99661 * 25.62613 * 13 12 11 16 16 N 1.31043 * 120.00358 * 17.64411 * 15 13 12 17 17 Si 1.86807 * 119.99839 * 197.64637 * 15 13 12 18 18 H 1.48498 * 109.47080 * 59.99878 * 17 15 13 19 19 H 1.48504 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47192 * 300.00098 * 17 15 13 21 21 H 1.09002 * 109.46960 * 90.02433 * 1 2 3 22 22 H 1.08999 * 109.47447 * 330.02449 * 1 2 3 23 23 H 1.08998 * 109.47083 * 210.02085 * 1 2 3 24 24 H 1.08000 * 124.43234 * 359.95898 * 3 2 1 25 25 H 1.07998 * 119.48621 * 180.02562 * 11 9 7 26 26 H 0.97001 * 120.00388 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2187 1.1145 0.0000 4 16 3.9379 0.7671 0.0007 5 6 3.6525 -0.9663 0.0003 6 6 2.2866 -1.2208 0.0052 7 6 1.8467 -2.6273 0.0118 8 8 0.6561 -2.8860 0.0124 9 7 2.7419 -3.6256 0.0175 10 1 2.4215 -4.5411 0.0222 11 6 4.0762 -3.4015 0.0167 12 6 4.5853 -2.1081 0.0004 13 6 5.9789 -1.8904 0.0003 14 1 6.3815 -0.9685 0.3932 15 6 6.8382 -2.8670 -0.5082 16 7 6.3693 -3.8117 -1.2860 17 14 8.6559 -2.8266 -0.0794 18 1 8.8198 -2.9356 1.3925 19 1 9.3455 -3.9643 -0.7393 20 1 9.2472 -1.5483 -0.5499 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5141 24 1 1.7966 2.1086 -0.0006 25 1 4.7562 -4.2405 0.0211 26 1 6.9660 -4.4902 -1.6388 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238554242.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:21 Heat of formation + Delta-G solvation = -7.710277 kcal Electronic energy + Delta-G solvation = -13967.842094 eV Core-core repulsion = 11523.422043 eV Total energy + Delta-G solvation = -2444.420051 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.041 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.55598 -36.21062 -35.75457 -33.63637 -31.12497 -28.73971 -27.00343 -25.03032 -22.98178 -21.94842 -19.49727 -17.53511 -16.89375 -16.22154 -15.83401 -14.92016 -14.85640 -14.35193 -13.33124 -13.09329 -12.97408 -12.64650 -11.93825 -11.77745 -11.53053 -11.38965 -11.25260 -10.93940 -10.68552 -10.45528 -10.23698 -9.99192 -9.34147 -8.91808 -8.48012 -7.61372 -6.85435 -6.76584 -4.32706 1.54080 2.30491 2.64788 2.79166 2.90528 3.05047 3.08230 3.36707 3.90399 4.14192 4.43706 5.12493 5.42556 5.64753 5.86511 5.99676 6.13124 6.18741 6.44486 6.48210 6.67370 6.91069 7.07195 7.12664 7.45151 7.79121 8.13811 8.29002 8.68819 8.73928 9.16952 10.17415 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.031669 B = 0.009507 C = 0.007475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.936874 B = 2944.463226 C = 3744.837400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.035 4.035 3 C -0.264 4.264 4 S 0.104 5.896 5 C -0.065 4.065 6 C -0.208 4.208 7 C 0.527 3.473 8 O -0.595 6.595 9 N -0.586 5.586 10 H 0.400 0.600 11 C -0.019 4.019 12 C 0.052 3.948 13 C -0.456 4.456 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.816 5.816 17 Si 0.909 3.091 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.266 1.266 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.081 0.919 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 3.729 1.853 4.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.048 4.048 3 C -0.398 4.398 4 S 0.370 5.630 5 C -0.186 4.186 6 C -0.221 4.221 7 C 0.323 3.677 8 O -0.483 6.483 9 N -0.217 5.217 10 H 0.235 0.765 11 C -0.147 4.147 12 C 0.045 3.955 13 C -0.488 4.488 14 H 0.096 0.904 15 C -0.140 4.140 16 N -0.445 5.445 17 Si 0.734 3.266 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.191 1.191 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.100 0.900 24 H 0.174 0.826 25 H 0.183 0.817 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.645 4.580 1.712 4.932 hybrid contribution -0.263 -1.210 -0.026 1.239 sum -0.908 3.370 1.686 3.876 Atomic orbital electron populations 1.20538 0.90184 1.02552 1.02051 1.19336 0.96463 0.90070 0.98885 1.24723 0.96967 1.01301 1.16808 1.83666 1.04246 0.99081 1.76019 1.24999 0.96224 0.97247 1.00099 1.20639 0.91776 0.93052 1.16590 1.17341 0.85179 0.84749 0.80384 1.90736 1.15716 1.84551 1.57279 1.42437 1.07134 1.09447 1.62666 0.76478 1.22029 0.81333 0.98870 1.12458 1.17237 0.92041 0.86061 1.00166 1.18893 0.89429 1.03480 1.37031 0.90394 1.25658 1.01157 0.94758 0.92473 1.69784 1.38047 1.12985 1.23662 0.86331 0.81755 0.78676 0.79823 1.18921 1.20443 1.19109 0.91714 0.92569 0.90011 0.82572 0.81667 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.78 36.00 0.35 -1.27 15 2 C -0.04 -0.71 5.97 -103.94 -0.62 -1.33 15 3 C -0.26 -4.75 10.80 28.81 0.31 -4.44 15 4 S 0.10 2.03 23.12 -107.50 -2.49 -0.46 15 5 C -0.06 -1.51 6.58 -35.57 -0.23 -1.74 15 6 C -0.21 -4.79 6.21 -103.31 -0.64 -5.44 15 7 C 0.53 12.43 7.89 -12.85 -0.10 12.33 15 8 O -0.59 -14.66 15.98 5.07 0.08 -14.58 15 9 N -0.59 -12.68 5.14 -12.46 -0.06 -12.74 15 10 H 0.40 7.41 8.84 -40.82 -0.36 7.05 15 11 C -0.02 -0.45 9.90 -15.74 -0.16 -0.61 15 12 C 0.05 1.29 5.71 -104.80 -0.60 0.69 15 13 C -0.46 -11.20 8.97 -37.98 -0.34 -11.54 15 14 H 0.08 1.86 7.90 -52.49 -0.41 1.45 15 15 C 0.07 1.73 5.12 -17.36 -0.09 1.64 15 16 N -0.82 -19.54 11.01 55.53 0.61 -18.93 15 17 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 15 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15 19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 22 H 0.06 0.79 8.12 -51.93 -0.42 0.37 15 23 H 0.08 1.55 6.62 -51.93 -0.34 1.20 15 24 H 0.16 2.26 8.06 -52.49 -0.42 1.84 15 25 H 0.17 3.81 6.13 -52.49 -0.32 3.49 15 26 H 0.28 6.20 8.30 -40.82 -0.34 5.86 15 LS Contribution 245.21 15.07 3.70 3.70 Total: -1.00 -27.44 245.21 -7.15 -34.59 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -1.84 Total: 7.36 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -2.12 Total: -11.70 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.55 Total: -31.67 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.08 Total: -14.58 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.49 Total: -0.46 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.44 -7.15 -34.59 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238554242.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.883 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds