Wall clock time and date at job start Mon Mar 30 2020 03:10:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.32239 * 122.56038 * 2 1
4 4 S 1.75396 * 111.13489 * 179.97438 * 3 2 1
5 5 C 1.75670 * 92.07645 * 0.02562 * 4 3 2
6 6 C 1.38939 * 109.90369 * 359.75264 * 5 4 3
7 7 C 1.47377 * 117.92319 * 180.27236 * 6 5 4
8 8 O 1.21837 * 119.62340 * 180.21036 * 7 6 5
9 9 N 1.34091 * 120.74870 * 0.22835 * 7 6 5
10 10 H 0.96994 * 118.82678 * 179.97438 * 9 7 6
11 11 C 1.35294 * 122.34801 * 359.95347 * 9 7 6
12 12 C 1.39007 * 121.02131 * 359.55387 * 11 9 7
13 13 C 1.41050 * 120.36560 * 179.97438 * 12 11 9
14 14 H 1.08001 * 120.00015 * 205.61727 * 13 12 11
15 15 C 1.39664 * 119.99661 * 25.62613 * 13 12 11
16 16 N 1.31043 * 120.00358 * 17.64411 * 15 13 12
17 17 Si 1.86807 * 119.99839 * 197.64637 * 15 13 12
18 18 H 1.48498 * 109.47080 * 59.99878 * 17 15 13
19 19 H 1.48504 * 109.46979 * 179.97438 * 17 15 13
20 20 H 1.48502 * 109.47192 * 300.00098 * 17 15 13
21 21 H 1.09002 * 109.46960 * 90.02433 * 1 2 3
22 22 H 1.08999 * 109.47447 * 330.02449 * 1 2 3
23 23 H 1.08998 * 109.47083 * 210.02085 * 1 2 3
24 24 H 1.08000 * 124.43234 * 359.95898 * 3 2 1
25 25 H 1.07998 * 119.48621 * 180.02562 * 11 9 7
26 26 H 0.97001 * 120.00388 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2187 1.1145 0.0000
4 16 3.9379 0.7671 0.0007
5 6 3.6525 -0.9663 0.0003
6 6 2.2866 -1.2208 0.0052
7 6 1.8467 -2.6273 0.0118
8 8 0.6561 -2.8860 0.0124
9 7 2.7419 -3.6256 0.0175
10 1 2.4215 -4.5411 0.0222
11 6 4.0762 -3.4015 0.0167
12 6 4.5853 -2.1081 0.0004
13 6 5.9789 -1.8904 0.0003
14 1 6.3815 -0.9685 0.3932
15 6 6.8382 -2.8670 -0.5082
16 7 6.3693 -3.8117 -1.2860
17 14 8.6559 -2.8266 -0.0794
18 1 8.8198 -2.9356 1.3925
19 1 9.3455 -3.9643 -0.7393
20 1 9.2472 -1.5483 -0.5499
21 1 -0.3633 -0.0004 -1.0277
22 1 -0.3634 0.8902 0.5134
23 1 -0.3633 -0.8898 0.5141
24 1 1.7966 2.1086 -0.0006
25 1 4.7562 -4.2405 0.0211
26 1 6.9660 -4.4902 -1.6388
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238554242.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:21
Heat of formation + Delta-G solvation = -7.710277 kcal
Electronic energy + Delta-G solvation = -13967.842094 eV
Core-core repulsion = 11523.422043 eV
Total energy + Delta-G solvation = -2444.420051 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 235.041 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.55598 -36.21062 -35.75457 -33.63637 -31.12497 -28.73971 -27.00343 -25.03032
-22.98178 -21.94842 -19.49727 -17.53511 -16.89375 -16.22154 -15.83401 -14.92016
-14.85640 -14.35193 -13.33124 -13.09329 -12.97408 -12.64650 -11.93825 -11.77745
-11.53053 -11.38965 -11.25260 -10.93940 -10.68552 -10.45528 -10.23698 -9.99192
-9.34147 -8.91808 -8.48012 -7.61372 -6.85435 -6.76584 -4.32706 1.54080
2.30491 2.64788 2.79166 2.90528 3.05047 3.08230 3.36707 3.90399
4.14192 4.43706 5.12493 5.42556 5.64753 5.86511 5.99676 6.13124
6.18741 6.44486 6.48210 6.67370 6.91069 7.07195 7.12664 7.45151
7.79121 8.13811 8.29002 8.68819 8.73928 9.16952 10.17415
Molecular weight = 235.04amu
Principal moments of inertia in cm(-1)
A = 0.031669 B = 0.009507 C = 0.007475
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 883.936874 B = 2944.463226 C = 3744.837400
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.094 4.094
2 C -0.035 4.035
3 C -0.264 4.264
4 S 0.104 5.896
5 C -0.065 4.065
6 C -0.208 4.208
7 C 0.527 3.473
8 O -0.595 6.595
9 N -0.586 5.586
10 H 0.400 0.600
11 C -0.019 4.019
12 C 0.052 3.948
13 C -0.456 4.456
14 H 0.078 0.922
15 C 0.074 3.926
16 N -0.816 5.816
17 Si 0.909 3.091
18 H -0.265 1.265
19 H -0.279 1.279
20 H -0.266 1.266
21 H 0.064 0.936
22 H 0.055 0.945
23 H 0.081 0.919
24 H 0.157 0.843
25 H 0.166 0.834
26 H 0.281 0.719
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.411 3.729 1.853 4.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.048 4.048
3 C -0.398 4.398
4 S 0.370 5.630
5 C -0.186 4.186
6 C -0.221 4.221
7 C 0.323 3.677
8 O -0.483 6.483
9 N -0.217 5.217
10 H 0.235 0.765
11 C -0.147 4.147
12 C 0.045 3.955
13 C -0.488 4.488
14 H 0.096 0.904
15 C -0.140 4.140
16 N -0.445 5.445
17 Si 0.734 3.266
18 H -0.189 1.189
19 H -0.204 1.204
20 H -0.191 1.191
21 H 0.083 0.917
22 H 0.074 0.926
23 H 0.100 0.900
24 H 0.174 0.826
25 H 0.183 0.817
26 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.645 4.580 1.712 4.932
hybrid contribution -0.263 -1.210 -0.026 1.239
sum -0.908 3.370 1.686 3.876
Atomic orbital electron populations
1.20538 0.90184 1.02552 1.02051 1.19336 0.96463 0.90070 0.98885
1.24723 0.96967 1.01301 1.16808 1.83666 1.04246 0.99081 1.76019
1.24999 0.96224 0.97247 1.00099 1.20639 0.91776 0.93052 1.16590
1.17341 0.85179 0.84749 0.80384 1.90736 1.15716 1.84551 1.57279
1.42437 1.07134 1.09447 1.62666 0.76478 1.22029 0.81333 0.98870
1.12458 1.17237 0.92041 0.86061 1.00166 1.18893 0.89429 1.03480
1.37031 0.90394 1.25658 1.01157 0.94758 0.92473 1.69784 1.38047
1.12985 1.23662 0.86331 0.81755 0.78676 0.79823 1.18921 1.20443
1.19109 0.91714 0.92569 0.90011 0.82572 0.81667 0.90849
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.62 9.78 36.00 0.35 -1.27 15
2 C -0.04 -0.71 5.97 -103.94 -0.62 -1.33 15
3 C -0.26 -4.75 10.80 28.81 0.31 -4.44 15
4 S 0.10 2.03 23.12 -107.50 -2.49 -0.46 15
5 C -0.06 -1.51 6.58 -35.57 -0.23 -1.74 15
6 C -0.21 -4.79 6.21 -103.31 -0.64 -5.44 15
7 C 0.53 12.43 7.89 -12.85 -0.10 12.33 15
8 O -0.59 -14.66 15.98 5.07 0.08 -14.58 15
9 N -0.59 -12.68 5.14 -12.46 -0.06 -12.74 15
10 H 0.40 7.41 8.84 -40.82 -0.36 7.05 15
11 C -0.02 -0.45 9.90 -15.74 -0.16 -0.61 15
12 C 0.05 1.29 5.71 -104.80 -0.60 0.69 15
13 C -0.46 -11.20 8.97 -37.98 -0.34 -11.54 15
14 H 0.08 1.86 7.90 -52.49 -0.41 1.45 15
15 C 0.07 1.73 5.12 -17.36 -0.09 1.64 15
16 N -0.82 -19.54 11.01 55.53 0.61 -18.93 15
17 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 15
18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 15
19 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15
20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15
21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15
22 H 0.06 0.79 8.12 -51.93 -0.42 0.37 15
23 H 0.08 1.55 6.62 -51.93 -0.34 1.20 15
24 H 0.16 2.26 8.06 -52.49 -0.42 1.84 15
25 H 0.17 3.81 6.13 -52.49 -0.32 3.49 15
26 H 0.28 6.20 8.30 -40.82 -0.34 5.86 15
LS Contribution 245.21 15.07 3.70 3.70
Total: -1.00 -27.44 245.21 -7.15 -34.59
By element:
Atomic # 1 Polarization: 9.20 SS G_CDS: -1.84 Total: 7.36 kcal
Atomic # 6 Polarization: -9.58 SS G_CDS: -2.12 Total: -11.70 kcal
Atomic # 7 Polarization: -32.22 SS G_CDS: 0.55 Total: -31.67 kcal
Atomic # 8 Polarization: -14.66 SS G_CDS: 0.08 Total: -14.58 kcal
Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal
Atomic # 16 Polarization: 2.03 SS G_CDS: -2.49 Total: -0.46 kcal
Total LS contribution 3.70 Total: 3.70 kcal
Total: -27.44 -7.15 -34.59 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238554242.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.883 kcal
(2) G-P(sol) polarization free energy of solvation -27.441 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.558 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.593 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.710 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds