Wall clock time and date at job start Mon Mar 30 2020 03:41:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.36939 * 120.00122 * 2 1
4 4 H 1.08004 * 119.99986 * 187.29273 * 3 2 1
5 5 C 1.38811 * 119.99997 * 7.28929 * 3 2 1
6 6 N 1.31621 * 120.00106 * 350.88737 * 5 3 2
7 7 Si 1.86796 * 119.99958 * 170.88381 * 5 3 2
8 8 H 1.48494 * 109.47173 * 0.02562 * 7 5 3
9 9 H 1.48504 * 109.47106 * 119.99998 * 7 5 3
10 10 H 1.48504 * 109.47196 * 239.99828 * 7 5 3
11 11 C 1.46505 * 119.99981 * 179.97438 * 2 1 3
12 12 H 1.08998 * 109.64102 * 5.04318 * 11 2 1
13 13 C 1.54161 * 109.64553 * 125.47489 * 11 2 1
14 14 S 1.82914 * 105.08719 * 147.63116 * 13 11 2
15 15 O 1.42100 * 109.35541 * 111.27028 * 14 13 11
16 16 O 1.42099 * 109.35283 * 244.34774 * 14 13 11
17 17 C 1.83295 * 97.16962 * 357.80577 * 14 13 11
18 18 C 1.53876 * 109.53452 * 244.68466 * 11 2 1
19 19 H 1.08998 * 110.03127 * 73.74389 * 18 11 2
20 20 O 1.42896 * 110.03015 * 312.31641 * 18 11 2
21 21 H 1.08999 * 109.47178 * 178.15857 * 1 2 3
22 22 H 1.09000 * 109.47263 * 298.15886 * 1 2 3
23 23 H 1.08999 * 109.47118 * 58.15971 * 1 2 3
24 24 H 0.96995 * 120.00395 * 179.97438 * 6 5 3
25 25 H 1.08995 * 110.32027 * 28.72781 * 13 11 2
26 26 H 1.09004 * 110.40447 * 266.57562 * 13 11 2
27 27 H 1.09003 * 110.78459 * 95.11948 * 17 14 13
28 28 H 1.08992 * 110.79248 * 218.58318 * 17 14 13
29 29 H 0.96701 * 114.00172 * 180.02562 * 20 18 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1859 0.0000
4 1 3.2232 1.1897 -0.1187
5 6 1.4641 2.3832 0.1525
6 7 0.1485 2.3973 0.1172
7 14 2.4087 3.9744 0.4081
8 1 3.8662 3.6902 0.4081
9 1 2.0895 4.9214 -0.6904
10 1 2.0212 4.5766 1.7090
11 6 2.1975 -1.2688 0.0006
12 1 1.4951 -2.0974 -0.0893
13 6 3.1864 -1.2969 -1.1818
14 16 4.6090 -2.2823 -0.5894
15 8 4.6541 -3.5152 -1.2944
16 8 5.7637 -1.4560 -0.5338
17 6 3.9908 -2.5771 1.1108
18 6 2.9918 -1.4037 1.3116
19 1 2.3153 -1.6261 2.1367
20 8 3.7076 -0.1957 1.5767
21 1 -0.3633 -1.0271 -0.0330
22 1 -0.3634 0.4850 0.9060
23 1 -0.3633 0.5421 -0.8730
24 1 -0.3307 3.2339 0.2241
25 1 3.5050 -0.2852 -1.4328
26 1 2.7293 -1.7750 -2.0482
27 1 3.4776 -3.5367 1.1748
28 1 4.8052 -2.5238 1.8333
29 1 4.2290 -0.2181 2.3908
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252440663.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:56
Heat of formation + Delta-G solvation = -73.103038 kcal
Electronic energy + Delta-G solvation = -15909.211957 eV
Core-core repulsion = 13154.647344 eV
Total energy + Delta-G solvation = -2754.564613 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 235.071 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.09210 -36.64562 -35.65297 -35.08511 -32.61259 -30.40098 -28.71461 -25.90197
-24.70530 -22.16171 -20.04937 -18.56048 -17.52127 -16.51707 -16.20011 -15.68805
-15.24092 -14.70668 -14.16202 -13.82156 -13.59613 -13.12422 -12.70334 -12.10586
-11.92069 -11.80917 -11.66953 -11.42647 -11.01545 -10.86965 -10.74452 -10.66823
-10.38312 -9.98863 -9.92274 -9.58929 -9.48864 -8.49244 -7.01229 -5.66615
-3.06829 0.43586 2.89585 3.41674 3.49629 3.54489 3.91704 4.24859
4.50026 4.59045 4.76837 5.02691 5.06943 5.23504 5.55661 5.60829
5.71729 5.77635 5.98268 6.13340 6.55276 6.61662 7.54590 7.74944
7.94852 8.11176 8.33814 9.25395 9.83225 10.24224 11.34330
Molecular weight = 235.07amu
Principal moments of inertia in cm(-1)
A = 0.035924 B = 0.009792 C = 0.008897
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 779.229085 B = 2858.707476 C = 3146.476756
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.162 3.838
2 N -0.585 5.585
3 C -0.220 4.220
4 H 0.090 0.910
5 C -0.008 4.008
6 N -0.922 5.922
7 Si 0.907 3.093
8 H -0.276 1.276
9 H -0.294 1.294
10 H -0.292 1.292
11 C 0.194 3.806
12 H 0.088 0.912
13 C -0.591 4.591
14 S 2.382 3.618
15 O -0.960 6.960
16 O -0.940 6.940
17 C -0.632 4.632
18 C 0.093 3.907
19 H 0.077 0.923
20 O -0.515 6.515
21 H -0.007 1.007
22 H 0.047 0.953
23 H 0.049 0.951
24 H 0.248 0.752
25 H 0.151 0.849
26 H 0.127 0.873
27 H 0.136 0.864
28 H 0.131 0.869
29 H 0.359 0.641
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.962 -9.288 2.567 10.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.305 5.305
3 C -0.348 4.348
4 H 0.108 0.892
5 C -0.204 4.204
6 N -0.570 5.570
7 Si 0.738 3.262
8 H -0.201 1.201
9 H -0.221 1.221
10 H -0.219 1.219
11 C 0.081 3.919
12 H 0.106 0.894
13 C -0.725 4.725
14 S 2.567 3.433
15 O -0.957 6.957
16 O -0.937 6.937
17 C -0.762 4.762
18 C 0.028 3.972
19 H 0.095 0.905
20 O -0.318 6.318
21 H 0.011 0.989
22 H 0.065 0.935
23 H 0.067 0.933
24 H 0.059 0.941
25 H 0.169 0.831
26 H 0.146 0.854
27 H 0.154 0.846
28 H 0.149 0.851
29 H 0.205 0.795
Dipole moment (debyes) X Y Z Total
from point charges 4.381 -9.204 1.558 10.312
hybrid contribution 0.026 0.887 1.193 1.486
sum 4.407 -8.318 2.750 9.807
Atomic orbital electron populations
1.21239 0.81061 0.93210 1.02616 1.44063 1.02175 0.99745 1.84473
1.19395 0.91914 0.82715 1.40792 0.89215 1.24887 0.95633 0.98092
1.01749 1.70224 1.05267 1.24972 1.56574 0.86104 0.79410 0.83394
0.77301 1.20086 1.22144 1.21866 1.20645 0.91618 0.91922 0.87707
0.89422 1.30888 1.16682 1.15948 1.08987 1.09035 0.78671 0.76334
0.79309 1.93550 1.87684 1.43599 1.70907 1.93581 1.45702 1.68527
1.85925 1.31415 1.11742 1.08591 1.24443 1.23457 0.90804 0.81523
1.01367 0.90489 1.87098 1.64982 1.34026 1.45679 0.98881 0.93469
0.93289 0.94083 0.83071 0.85424 0.84572 0.85115 0.79521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 22.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 3.78 9.01 59.85 0.54 4.32 15
2 N -0.58 -13.49 2.89 -172.26 -0.50 -13.99 15
3 C -0.22 -5.69 7.27 -15.06 -0.11 -5.80 15
4 H 0.09 2.33 5.85 -52.48 -0.31 2.02 15
5 C -0.01 -0.23 5.44 -17.43 -0.09 -0.33 15
6 N -0.92 -26.05 9.49 55.49 0.53 -25.52 15
7 Si 0.91 22.05 29.56 -169.99 -5.03 17.02 15
8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15
9 H -0.29 -7.23 7.11 56.52 0.40 -6.82 15
10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15
11 C 0.19 3.44 3.02 -66.86 -0.20 3.24 15
12 H 0.09 1.31 7.57 -51.93 -0.39 0.91 15
13 C -0.59 -9.77 6.71 37.76 0.25 -9.51 15
14 S 2.38 36.16 6.01 -107.50 -0.65 35.52 15
15 O -0.96 -16.49 18.15 -57.73 -1.05 -17.54 15
16 O -0.94 -17.69 18.15 -57.73 -1.05 -18.73 15
17 C -0.63 -7.55 7.03 38.44 0.27 -7.28 15
18 C 0.09 1.42 3.76 -24.99 -0.09 1.33 15
19 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15
20 O -0.51 -9.09 10.25 -35.23 -0.36 -9.45 15
21 H -0.01 -0.15 7.56 -51.93 -0.39 -0.54 15
22 H 0.05 1.20 6.99 -51.93 -0.36 0.84 15
23 H 0.05 1.25 7.12 -51.93 -0.37 0.88 15
24 H 0.25 6.89 8.31 -40.82 -0.34 6.55 15
25 H 0.15 2.88 6.36 -51.93 -0.33 2.55 15
26 H 0.13 1.83 8.14 -51.93 -0.42 1.41 15
27 H 0.14 1.28 8.14 -51.93 -0.42 0.86 15
28 H 0.13 1.32 8.14 -51.93 -0.42 0.89 15
29 H 0.36 4.61 9.11 45.56 0.42 5.03 15
LS Contribution 249.50 15.07 3.76 3.76
Total: -1.00 -34.31 249.50 -6.34 -40.65
By element:
Atomic # 1 Polarization: 4.87 SS G_CDS: -2.57 Total: 2.31 kcal
Atomic # 6 Polarization: -14.59 SS G_CDS: 0.56 Total: -14.03 kcal
Atomic # 7 Polarization: -39.54 SS G_CDS: 0.03 Total: -39.51 kcal
Atomic # 8 Polarization: -43.27 SS G_CDS: -2.46 Total: -45.72 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal
Atomic # 16 Polarization: 36.16 SS G_CDS: -0.65 Total: 35.52 kcal
Total LS contribution 3.76 Total: 3.76 kcal
Total: -34.31 -6.34 -40.65 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252440663.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.451 kcal
(2) G-P(sol) polarization free energy of solvation -34.310 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.103 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds