Wall clock time and date at job start Mon Mar 30 2020 03:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 120.00122 * 2 1 4 4 H 1.08004 * 119.99986 * 187.29273 * 3 2 1 5 5 C 1.38811 * 119.99997 * 7.28929 * 3 2 1 6 6 N 1.31621 * 120.00106 * 350.88737 * 5 3 2 7 7 Si 1.86796 * 119.99958 * 170.88381 * 5 3 2 8 8 H 1.48494 * 109.47173 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47106 * 119.99998 * 7 5 3 10 10 H 1.48504 * 109.47196 * 239.99828 * 7 5 3 11 11 C 1.46505 * 119.99981 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.64102 * 5.04318 * 11 2 1 13 13 C 1.54161 * 109.64553 * 125.47489 * 11 2 1 14 14 S 1.82914 * 105.08719 * 147.63116 * 13 11 2 15 15 O 1.42100 * 109.35541 * 111.27028 * 14 13 11 16 16 O 1.42099 * 109.35283 * 244.34774 * 14 13 11 17 17 C 1.83295 * 97.16962 * 357.80577 * 14 13 11 18 18 C 1.53876 * 109.53452 * 244.68466 * 11 2 1 19 19 H 1.08998 * 110.03127 * 73.74389 * 18 11 2 20 20 O 1.42896 * 110.03015 * 312.31641 * 18 11 2 21 21 H 1.08999 * 109.47178 * 178.15857 * 1 2 3 22 22 H 1.09000 * 109.47263 * 298.15886 * 1 2 3 23 23 H 1.08999 * 109.47118 * 58.15971 * 1 2 3 24 24 H 0.96995 * 120.00395 * 179.97438 * 6 5 3 25 25 H 1.08995 * 110.32027 * 28.72781 * 13 11 2 26 26 H 1.09004 * 110.40447 * 266.57562 * 13 11 2 27 27 H 1.09003 * 110.78459 * 95.11948 * 17 14 13 28 28 H 1.08992 * 110.79248 * 218.58318 * 17 14 13 29 29 H 0.96701 * 114.00172 * 180.02562 * 20 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.2232 1.1897 -0.1187 5 6 1.4641 2.3832 0.1525 6 7 0.1485 2.3973 0.1172 7 14 2.4087 3.9744 0.4081 8 1 3.8662 3.6902 0.4081 9 1 2.0895 4.9214 -0.6904 10 1 2.0212 4.5766 1.7090 11 6 2.1975 -1.2688 0.0006 12 1 1.4951 -2.0974 -0.0893 13 6 3.1864 -1.2969 -1.1818 14 16 4.6090 -2.2823 -0.5894 15 8 4.6541 -3.5152 -1.2944 16 8 5.7637 -1.4560 -0.5338 17 6 3.9908 -2.5771 1.1108 18 6 2.9918 -1.4037 1.3116 19 1 2.3153 -1.6261 2.1367 20 8 3.7076 -0.1957 1.5767 21 1 -0.3633 -1.0271 -0.0330 22 1 -0.3634 0.4850 0.9060 23 1 -0.3633 0.5421 -0.8730 24 1 -0.3307 3.2339 0.2241 25 1 3.5050 -0.2852 -1.4328 26 1 2.7293 -1.7750 -2.0482 27 1 3.4776 -3.5367 1.1748 28 1 4.8052 -2.5238 1.8333 29 1 4.2290 -0.2181 2.3908 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252440663.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:56 Heat of formation + Delta-G solvation = -73.103038 kcal Electronic energy + Delta-G solvation = -15909.211957 eV Core-core repulsion = 13154.647344 eV Total energy + Delta-G solvation = -2754.564613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.09210 -36.64562 -35.65297 -35.08511 -32.61259 -30.40098 -28.71461 -25.90197 -24.70530 -22.16171 -20.04937 -18.56048 -17.52127 -16.51707 -16.20011 -15.68805 -15.24092 -14.70668 -14.16202 -13.82156 -13.59613 -13.12422 -12.70334 -12.10586 -11.92069 -11.80917 -11.66953 -11.42647 -11.01545 -10.86965 -10.74452 -10.66823 -10.38312 -9.98863 -9.92274 -9.58929 -9.48864 -8.49244 -7.01229 -5.66615 -3.06829 0.43586 2.89585 3.41674 3.49629 3.54489 3.91704 4.24859 4.50026 4.59045 4.76837 5.02691 5.06943 5.23504 5.55661 5.60829 5.71729 5.77635 5.98268 6.13340 6.55276 6.61662 7.54590 7.74944 7.94852 8.11176 8.33814 9.25395 9.83225 10.24224 11.34330 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.035924 B = 0.009792 C = 0.008897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.229085 B = 2858.707476 C = 3146.476756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.585 5.585 3 C -0.220 4.220 4 H 0.090 0.910 5 C -0.008 4.008 6 N -0.922 5.922 7 Si 0.907 3.093 8 H -0.276 1.276 9 H -0.294 1.294 10 H -0.292 1.292 11 C 0.194 3.806 12 H 0.088 0.912 13 C -0.591 4.591 14 S 2.382 3.618 15 O -0.960 6.960 16 O -0.940 6.940 17 C -0.632 4.632 18 C 0.093 3.907 19 H 0.077 0.923 20 O -0.515 6.515 21 H -0.007 1.007 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.248 0.752 25 H 0.151 0.849 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.131 0.869 29 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 -9.288 2.567 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.305 5.305 3 C -0.348 4.348 4 H 0.108 0.892 5 C -0.204 4.204 6 N -0.570 5.570 7 Si 0.738 3.262 8 H -0.201 1.201 9 H -0.221 1.221 10 H -0.219 1.219 11 C 0.081 3.919 12 H 0.106 0.894 13 C -0.725 4.725 14 S 2.567 3.433 15 O -0.957 6.957 16 O -0.937 6.937 17 C -0.762 4.762 18 C 0.028 3.972 19 H 0.095 0.905 20 O -0.318 6.318 21 H 0.011 0.989 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.169 0.831 26 H 0.146 0.854 27 H 0.154 0.846 28 H 0.149 0.851 29 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 4.381 -9.204 1.558 10.312 hybrid contribution 0.026 0.887 1.193 1.486 sum 4.407 -8.318 2.750 9.807 Atomic orbital electron populations 1.21239 0.81061 0.93210 1.02616 1.44063 1.02175 0.99745 1.84473 1.19395 0.91914 0.82715 1.40792 0.89215 1.24887 0.95633 0.98092 1.01749 1.70224 1.05267 1.24972 1.56574 0.86104 0.79410 0.83394 0.77301 1.20086 1.22144 1.21866 1.20645 0.91618 0.91922 0.87707 0.89422 1.30888 1.16682 1.15948 1.08987 1.09035 0.78671 0.76334 0.79309 1.93550 1.87684 1.43599 1.70907 1.93581 1.45702 1.68527 1.85925 1.31415 1.11742 1.08591 1.24443 1.23457 0.90804 0.81523 1.01367 0.90489 1.87098 1.64982 1.34026 1.45679 0.98881 0.93469 0.93289 0.94083 0.83071 0.85424 0.84572 0.85115 0.79521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.78 9.01 59.85 0.54 4.32 15 2 N -0.58 -13.49 2.89 -172.26 -0.50 -13.99 15 3 C -0.22 -5.69 7.27 -15.06 -0.11 -5.80 15 4 H 0.09 2.33 5.85 -52.48 -0.31 2.02 15 5 C -0.01 -0.23 5.44 -17.43 -0.09 -0.33 15 6 N -0.92 -26.05 9.49 55.49 0.53 -25.52 15 7 Si 0.91 22.05 29.56 -169.99 -5.03 17.02 15 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 9 H -0.29 -7.23 7.11 56.52 0.40 -6.82 15 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 11 C 0.19 3.44 3.02 -66.86 -0.20 3.24 15 12 H 0.09 1.31 7.57 -51.93 -0.39 0.91 15 13 C -0.59 -9.77 6.71 37.76 0.25 -9.51 15 14 S 2.38 36.16 6.01 -107.50 -0.65 35.52 15 15 O -0.96 -16.49 18.15 -57.73 -1.05 -17.54 15 16 O -0.94 -17.69 18.15 -57.73 -1.05 -18.73 15 17 C -0.63 -7.55 7.03 38.44 0.27 -7.28 15 18 C 0.09 1.42 3.76 -24.99 -0.09 1.33 15 19 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 20 O -0.51 -9.09 10.25 -35.23 -0.36 -9.45 15 21 H -0.01 -0.15 7.56 -51.93 -0.39 -0.54 15 22 H 0.05 1.20 6.99 -51.93 -0.36 0.84 15 23 H 0.05 1.25 7.12 -51.93 -0.37 0.88 15 24 H 0.25 6.89 8.31 -40.82 -0.34 6.55 15 25 H 0.15 2.88 6.36 -51.93 -0.33 2.55 15 26 H 0.13 1.83 8.14 -51.93 -0.42 1.41 15 27 H 0.14 1.28 8.14 -51.93 -0.42 0.86 15 28 H 0.13 1.32 8.14 -51.93 -0.42 0.89 15 29 H 0.36 4.61 9.11 45.56 0.42 5.03 15 LS Contribution 249.50 15.07 3.76 3.76 Total: -1.00 -34.31 249.50 -6.34 -40.65 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -2.57 Total: 2.31 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 0.56 Total: -14.03 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.03 Total: -39.51 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.46 Total: -45.72 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Atomic # 16 Polarization: 36.16 SS G_CDS: -0.65 Total: 35.52 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.31 -6.34 -40.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252440663.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.451 kcal (2) G-P(sol) polarization free energy of solvation -34.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds