Wall clock time and date at job start Mon Mar 30 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.53000 * 109.46968 * 293.95472 * 3 2 1 5 5 C 1.50703 * 109.47249 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00002 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99978 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47271 * 89.99767 * 9 7 5 11 11 H 1.48494 * 109.47306 * 210.00140 * 9 7 5 12 12 H 1.48499 * 109.47082 * 330.00186 * 9 7 5 13 13 C 1.46896 * 111.00141 * 123.95308 * 2 1 3 14 14 C 1.53002 * 109.47243 * 66.04370 * 13 2 1 15 15 C 1.50706 * 109.46925 * 180.02562 * 14 13 2 16 16 C 1.38676 * 120.41823 * 269.72219 * 15 14 13 17 17 C 1.38621 * 118.41711 * 179.78578 * 16 15 14 18 18 C 1.38230 * 119.16265 * 0.51209 * 17 16 15 19 19 N 1.31844 * 120.76473 * 359.72963 * 18 17 16 20 20 C 1.31891 * 121.72676 * 359.97438 * 19 18 17 21 21 H 1.09004 * 109.47324 * 296.04620 * 1 2 3 22 22 H 1.09000 * 109.47134 * 56.04693 * 1 2 3 23 23 H 1.09002 * 109.47308 * 176.05293 * 1 2 3 24 24 H 1.09002 * 109.47424 * 53.95004 * 3 2 1 25 25 H 1.09000 * 109.47532 * 173.95725 * 3 2 1 26 26 H 1.09004 * 109.47183 * 300.00018 * 4 3 2 27 27 H 1.08996 * 109.47490 * 59.99650 * 4 3 2 28 28 H 0.97008 * 120.00203 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47041 * 306.04581 * 13 2 1 30 30 H 1.09004 * 109.47535 * 186.04620 * 13 2 1 31 31 H 1.09000 * 109.46497 * 60.00307 * 14 13 2 32 32 H 1.09000 * 109.47312 * 300.00087 * 14 13 2 33 33 H 1.08002 * 120.78654 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.42153 * 180.21740 * 17 16 15 35 35 H 1.08005 * 119.61673 * 179.74765 * 18 17 16 36 36 H 1.07994 * 119.61862 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3186 6 1 2.7200 3.8322 -0.4639 7 6 1.9669 4.2812 -2.4101 8 7 1.3001 3.8328 -3.4511 9 14 2.6364 6.0251 -2.4102 10 1 4.0086 6.0286 -2.9780 11 1 1.7573 6.8927 -3.2346 12 1 2.6755 6.5404 -1.0180 13 6 1.9955 -0.7659 1.1376 14 6 1.6314 -2.2426 0.9704 15 6 2.1711 -3.0282 2.1378 16 6 3.4408 -3.5832 2.0838 17 6 3.8973 -4.2940 3.1829 18 6 3.0736 -4.4339 4.2841 19 7 1.8697 -3.8966 4.2984 20 6 1.4048 -3.2091 3.2733 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0707 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 2.0657 1.5015 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.1555 4.4078 -4.2189 29 1 1.5611 -0.3872 2.0628 30 1 3.0798 -0.6611 1.1756 31 1 2.0658 -2.6213 0.0452 32 1 0.5472 -2.3475 0.9324 33 1 4.0606 -3.4613 1.2078 34 1 4.8823 -4.7368 3.1771 35 1 3.4203 -4.9897 5.1428 36 1 0.4135 -2.7833 3.3218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258848965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:24 Heat of formation + Delta-G solvation = 24.383002 kcal Electronic energy + Delta-G solvation = -15576.455275 eV Core-core repulsion = 13060.058873 eV Total energy + Delta-G solvation = -2516.396402 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.30970 -37.44876 -34.11332 -32.87254 -32.06571 -30.00807 -28.20398 -26.23381 -24.41092 -23.68541 -22.48880 -20.79738 -19.87979 -17.22938 -16.59183 -16.44074 -15.55810 -14.92784 -14.64965 -14.43412 -14.15542 -13.55242 -13.35346 -13.22370 -13.15537 -12.26011 -12.17514 -11.87623 -11.59584 -11.18037 -11.14295 -10.91690 -10.62896 -10.55931 -9.93459 -9.85508 -9.59749 -9.41920 -9.13447 -8.99768 -8.33243 -7.75489 -5.99778 -4.02169 0.96047 1.14068 3.32000 3.38140 3.41325 3.65662 4.24319 4.39207 4.52021 4.67379 4.82262 4.87359 4.95583 5.16393 5.34043 5.36098 5.49471 5.55674 5.69835 5.80651 5.87250 5.96123 5.98231 6.14404 6.26944 6.28582 6.45265 6.52224 6.58086 6.96110 7.47610 7.55416 7.78803 7.82143 7.89552 8.07837 8.43418 9.05086 9.61451 11.11581 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.053552 B = 0.003840 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.732010 B = 7289.404309 C = 7481.715467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.543 5.543 3 C 0.063 3.937 4 C 0.028 3.972 5 C -0.523 4.523 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.061 3.939 14 C -0.076 4.076 15 C -0.124 4.124 16 C -0.073 4.073 17 C -0.171 4.171 18 C 0.086 3.914 19 N -0.486 5.486 20 C 0.098 3.902 21 H 0.017 0.983 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.019 0.981 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.018 0.982 28 H 0.260 0.740 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -15.366 11.380 19.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.267 5.267 3 C -0.064 4.064 4 C -0.010 4.010 5 C -0.561 4.561 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 C -0.067 4.067 14 C -0.114 4.114 15 C -0.126 4.126 16 C -0.099 4.099 17 C -0.191 4.191 18 C -0.071 4.071 19 N -0.194 5.194 20 C -0.058 4.058 21 H 0.036 0.964 22 H 0.098 0.902 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.817 -15.638 11.522 19.510 hybrid contribution 0.684 1.496 -0.070 1.647 sum 2.501 -14.142 11.453 18.369 Atomic orbital electron populations 1.22440 0.88110 1.00983 1.01045 1.62086 1.07658 1.16071 1.40869 1.22350 0.98493 0.85101 1.00450 1.19104 0.96941 0.94025 0.90911 1.21198 1.35150 0.97859 1.01932 0.92827 1.24992 0.95285 0.98473 0.95567 1.69972 1.40789 1.36462 1.06014 0.86596 0.78863 0.84576 0.77968 1.20632 1.21217 1.19935 1.22047 1.00186 0.92114 0.92377 1.20609 1.01362 0.94225 0.95212 1.21014 0.95270 0.98782 0.97528 1.21590 0.95064 0.94663 0.98585 1.22151 1.01384 1.00761 0.94821 1.22723 0.89820 0.96943 0.97649 1.67671 1.14781 1.08484 1.28464 1.22704 0.99813 0.94872 0.88461 0.96406 0.90243 0.92359 0.96222 0.92201 0.95717 0.96396 0.92994 0.95419 0.91150 0.89765 0.90542 0.84630 0.84893 0.83037 0.82953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.13 60.06 0.55 0.92 16 2 N -0.54 -9.71 4.76 -242.91 -1.16 -10.87 16 3 C 0.06 1.33 4.90 -3.83 -0.02 1.31 16 4 C 0.03 0.72 4.90 -27.88 -0.14 0.58 16 5 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 6 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 0.88 4.94 -3.83 -0.02 0.86 16 14 C -0.08 -0.89 5.30 -27.88 -0.15 -1.04 16 15 C -0.12 -1.38 5.15 -104.48 -0.54 -1.91 16 16 C -0.07 -0.74 9.86 -39.28 -0.39 -1.12 16 17 C -0.17 -1.54 10.11 -39.44 -0.40 -1.94 16 18 C 0.09 0.85 11.18 -17.55 -0.20 0.65 16 19 N -0.49 -5.91 10.36 -13.25 -0.14 -6.05 16 20 C 0.10 1.13 10.86 -17.55 -0.19 0.94 16 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 22 H 0.08 1.47 6.30 -51.93 -0.33 1.14 16 23 H 0.06 0.80 6.47 -51.93 -0.34 0.46 16 24 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 25 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 26 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.49 6.47 -51.93 -0.34 0.15 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 31 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 32 H 0.08 0.85 6.50 -51.93 -0.34 0.51 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 300.68 15.07 4.53 4.53 Total: -1.00 -31.27 300.68 -8.45 -39.71 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.50 Total: -3.49 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.90 Total: -14.35 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.56 Total: -43.07 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.27 -8.45 -39.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258848965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.096 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds