Wall clock time and date at job start Mon Mar 30 2020 03:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.53000 * 109.46968 * 293.95472 * 3 2 1 5 5 C 1.50703 * 109.47249 * 180.02562 * 4 3 2 6 6 H 1.07996 * 120.00002 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99978 * 179.97438 * 5 4 3 8 8 N 1.31513 * 120.00054 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47271 * 89.99767 * 9 7 5 11 11 H 1.48494 * 109.47306 * 210.00140 * 9 7 5 12 12 H 1.48499 * 109.47082 * 330.00186 * 9 7 5 13 13 C 1.46896 * 111.00141 * 123.95308 * 2 1 3 14 14 C 1.53002 * 109.47243 * 66.04370 * 13 2 1 15 15 C 1.50706 * 109.46925 * 180.02562 * 14 13 2 16 16 C 1.38676 * 120.41823 * 269.72219 * 15 14 13 17 17 C 1.38621 * 118.41711 * 179.78578 * 16 15 14 18 18 C 1.38230 * 119.16265 * 0.51209 * 17 16 15 19 19 N 1.31844 * 120.76473 * 359.72963 * 18 17 16 20 20 C 1.31891 * 121.72676 * 359.97438 * 19 18 17 21 21 H 1.09004 * 109.47324 * 296.04620 * 1 2 3 22 22 H 1.09000 * 109.47134 * 56.04693 * 1 2 3 23 23 H 1.09002 * 109.47308 * 176.05293 * 1 2 3 24 24 H 1.09002 * 109.47424 * 53.95004 * 3 2 1 25 25 H 1.09000 * 109.47532 * 173.95725 * 3 2 1 26 26 H 1.09004 * 109.47183 * 300.00018 * 4 3 2 27 27 H 1.08996 * 109.47490 * 59.99650 * 4 3 2 28 28 H 0.97008 * 120.00203 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.47041 * 306.04581 * 13 2 1 30 30 H 1.09004 * 109.47535 * 186.04620 * 13 2 1 31 31 H 1.09000 * 109.46497 * 60.00307 * 14 13 2 32 32 H 1.09000 * 109.47312 * 300.00087 * 14 13 2 33 33 H 1.08002 * 120.78654 * 0.02562 * 16 15 14 34 34 H 1.08002 * 120.42153 * 180.21740 * 17 16 15 35 35 H 1.08005 * 119.61673 * 179.74765 * 18 17 16 36 36 H 1.07994 * 119.61862 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1720 3.4641 -1.3186 6 1 2.7200 3.8322 -0.4639 7 6 1.9669 4.2812 -2.4101 8 7 1.3001 3.8328 -3.4511 9 14 2.6364 6.0251 -2.4102 10 1 4.0086 6.0286 -2.9780 11 1 1.7573 6.8927 -3.2346 12 1 2.6755 6.5404 -1.0180 13 6 1.9955 -0.7659 1.1376 14 6 1.6314 -2.2426 0.9704 15 6 2.1711 -3.0282 2.1378 16 6 3.4408 -3.5832 2.0838 17 6 3.8973 -4.2940 3.1829 18 6 3.0736 -4.4339 4.2841 19 7 1.8697 -3.8966 4.2984 20 6 1.4048 -3.2091 3.2733 21 1 -0.3634 0.4513 0.9233 22 1 -0.3633 0.5740 -0.8524 23 1 -0.3634 -1.0252 -0.0707 24 1 1.5611 1.9274 0.8309 25 1 3.0797 1.3445 0.1082 26 1 2.0657 1.5015 -2.1492 27 1 0.5472 2.0844 -1.4266 28 1 1.1555 4.4078 -4.2189 29 1 1.5611 -0.3872 2.0628 30 1 3.0798 -0.6611 1.1756 31 1 2.0658 -2.6213 0.0452 32 1 0.5472 -2.3475 0.9324 33 1 4.0606 -3.4613 1.2078 34 1 4.8823 -4.7368 3.1771 35 1 3.4203 -4.9897 5.1428 36 1 0.4135 -2.7833 3.3218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258848965.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:24 Heat of formation + Delta-G solvation = 4.659560 kcal Electronic energy + Delta-G solvation = -15577.310547 eV Core-core repulsion = 13060.058873 eV Total energy + Delta-G solvation = -2517.251674 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 234.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.10104 -38.84580 -35.56067 -34.53642 -32.89582 -31.69067 -29.42834 -27.75452 -26.04023 -24.45819 -23.77907 -21.99460 -21.50512 -18.60637 -17.95924 -17.36889 -16.75246 -16.54745 -16.26476 -15.57311 -15.34122 -14.79052 -14.64715 -14.33983 -13.98930 -13.89373 -13.68918 -13.19797 -13.01227 -12.80557 -12.59277 -12.55091 -12.32155 -11.80309 -11.74905 -11.36086 -11.25481 -10.68502 -10.53617 -10.36439 -9.86076 -9.19877 -8.19797 -6.31060 0.19004 0.36940 1.40532 1.41985 1.52940 2.40451 2.84672 3.10868 3.13562 3.60528 3.89595 3.96501 4.08997 4.12788 4.22919 4.31167 4.37545 4.49661 4.58348 4.67752 4.70987 4.82714 4.86800 4.95830 5.05614 5.08367 5.20592 5.24553 5.44651 5.46699 5.66838 5.78705 5.82233 6.09577 6.28854 6.33562 6.86124 7.04665 7.37936 8.92252 Molecular weight = 234.14amu Principal moments of inertia in cm(-1) A = 0.053552 B = 0.003840 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.732010 B = 7289.404309 C = 7481.715467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.078 3.922 4 C 0.035 3.965 5 C -0.546 4.546 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.966 3.034 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.264 1.264 13 C 0.065 3.935 14 C -0.063 4.063 15 C -0.133 4.133 16 C -0.081 4.081 17 C -0.167 4.167 18 C 0.078 3.922 19 N -0.513 5.513 20 C 0.085 3.915 21 H 0.024 0.976 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.018 0.982 25 H 0.062 0.938 26 H -0.007 1.007 27 H -0.003 1.003 28 H 0.264 0.736 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.177 0.823 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -15.788 12.507 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.049 4.049 4 C -0.002 4.002 5 C -0.585 4.585 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.188 1.188 13 C -0.063 4.063 14 C -0.101 4.101 15 C -0.135 4.135 16 C -0.107 4.107 17 C -0.186 4.186 18 C -0.079 4.079 19 N -0.222 5.222 20 C -0.071 4.071 21 H 0.043 0.957 22 H 0.069 0.931 23 H 0.108 0.892 24 H 0.036 0.964 25 H 0.080 0.920 26 H 0.012 0.988 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.194 0.806 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.894 -16.078 12.664 20.670 hybrid contribution 0.361 1.538 -0.396 1.628 sum 3.255 -14.540 12.268 19.301 Atomic orbital electron populations 1.22426 0.87280 1.02524 1.00071 1.62001 1.08540 1.14169 1.43052 1.21985 0.98660 0.86858 0.97421 1.18935 0.95168 0.93615 0.92491 1.21636 1.35394 0.99108 1.02327 0.92313 1.25955 0.95406 1.03238 0.95048 1.70106 1.41925 1.38293 1.06750 0.85436 0.78321 0.78745 0.78465 1.19686 1.20687 1.18823 1.22075 0.99973 0.93272 0.90942 1.20447 1.01851 0.92227 0.95610 1.20932 0.95947 0.99511 0.97147 1.21878 0.94819 0.94453 0.99520 1.22478 1.02427 0.99835 0.93868 1.23244 0.89274 0.96513 0.98861 1.67686 1.16108 1.09421 1.28991 1.22868 1.00388 0.95234 0.88645 0.95705 0.93120 0.89248 0.96390 0.91968 0.98821 0.98510 0.92735 0.95206 0.91235 0.89796 0.89843 0.83327 0.81920 0.80559 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 9.13 127.69 1.17 1.98 16 2 N -0.55 -19.62 4.76 -922.44 -4.39 -24.02 16 3 C 0.08 3.35 4.90 86.30 0.42 3.77 16 4 C 0.04 1.90 4.90 29.85 0.15 2.05 16 5 C -0.55 -31.47 9.11 25.60 0.23 -31.24 16 6 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 9 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 13 C 0.07 1.80 4.94 86.30 0.43 2.23 16 14 C -0.06 -1.38 5.30 29.85 0.16 -1.22 16 15 C -0.13 -2.75 5.15 -19.77 -0.10 -2.85 16 16 C -0.08 -1.45 9.86 22.47 0.22 -1.23 16 17 C -0.17 -2.55 10.11 22.36 0.23 -2.33 16 18 C 0.08 1.37 11.18 84.69 0.95 2.32 16 19 N -0.51 -11.80 10.36 -195.85 -2.03 -13.83 16 20 C 0.08 1.86 10.86 84.67 0.92 2.78 16 21 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.05 1.93 6.30 -2.39 -0.02 1.92 16 23 H 0.09 2.32 6.47 -2.39 -0.02 2.30 16 24 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 25 H 0.06 2.60 7.93 -2.39 -0.02 2.58 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 27 H 0.00 -0.19 6.47 -2.39 -0.02 -0.21 16 28 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.03 0.82 8.12 -2.38 -0.02 0.80 16 30 H 0.07 1.93 7.93 -2.39 -0.02 1.91 16 31 H 0.08 1.85 8.09 -2.39 -0.02 1.83 16 32 H 0.08 1.70 6.50 -2.39 -0.02 1.68 16 33 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -67.53 300.68 2.15 -65.38 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 1.04 Total: 5.98 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 5.23 Total: -23.20 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -6.14 Total: -94.60 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.53 2.15 -65.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258848965.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.038 kcal (2) G-P(sol) polarization free energy of solvation -67.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds