Wall clock time and date at job start Mon Mar 30 2020 03:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35086 * 126.07858 * 2 1 4 4 N 1.35033 * 107.98166 * 180.14900 * 3 2 1 5 5 H 0.97001 * 125.93617 * 179.87882 * 4 3 2 6 6 N 1.40072 * 108.13541 * 359.60665 * 4 3 2 7 7 C 1.31619 * 108.10734 * 0.24751 * 6 4 3 8 8 C 1.48446 * 126.03628 * 180.02562 * 7 6 4 9 9 C 1.38025 * 121.15957 * 334.71000 * 8 7 6 10 10 C 1.39851 * 110.98869 * 179.79688 * 9 8 7 11 11 C 1.40172 * 127.94612 * 180.16339 * 10 9 8 12 12 H 1.07993 * 120.00109 * 0.32998 * 11 10 9 13 13 C 1.40179 * 119.99347 * 180.32879 * 11 10 9 14 14 N 1.30748 * 120.00589 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99706 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47017 * 89.99938 * 15 13 11 17 17 H 1.48497 * 109.47234 * 210.00560 * 15 13 11 18 18 H 1.48507 * 109.46817 * 330.00048 * 15 13 11 19 19 S 1.77032 * 104.10140 * 0.41454 * 10 9 8 20 20 N 1.30643 * 121.16513 * 154.99476 * 8 7 6 21 21 H 1.09000 * 109.47269 * 270.28609 * 1 2 3 22 22 H 1.09000 * 109.47055 * 30.27965 * 1 2 3 23 23 H 1.08996 * 109.47170 * 150.28481 * 1 2 3 24 24 H 1.08004 * 126.00936 * 0.02562 * 3 2 1 25 25 H 1.08001 * 124.50785 * 359.97384 * 9 8 7 26 26 H 0.97003 * 120.00414 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3025 1.0918 0.0000 4 7 3.5861 0.6723 -0.0033 5 1 4.3712 1.2420 -0.0058 6 7 3.5870 -0.7284 0.0037 7 6 2.3363 -1.1383 0.0056 8 6 1.8803 -2.5510 0.0131 9 6 2.6774 -3.5614 -0.4858 10 6 2.0439 -4.8027 -0.3695 11 6 2.5305 -6.0585 -0.7582 12 1 3.5105 -6.1436 -1.2039 13 6 1.7449 -7.2039 -0.5684 14 7 0.5583 -7.1009 -0.0292 15 14 2.3936 -8.8776 -1.0857 16 1 3.1275 -9.4959 0.0475 17 1 1.2569 -9.7504 -1.4746 18 1 3.3122 -8.7167 -2.2415 19 16 0.4832 -4.4226 0.3746 20 7 0.7084 -2.8806 0.4872 21 1 -0.3634 0.0051 1.0276 22 1 -0.3633 0.8875 -0.5182 23 1 -0.3633 -0.8925 -0.5094 24 1 1.9704 2.1195 0.0004 25 1 3.6607 -3.4134 -0.9071 26 1 0.0145 -7.8934 0.1018 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259439738.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:36 Heat of formation + Delta-G solvation = 63.553277 kcal Electronic energy + Delta-G solvation = -13557.695923 eV Core-core repulsion = 11148.658843 eV Total energy + Delta-G solvation = -2409.037080 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.05070 -38.87883 -36.11305 -33.37665 -32.21043 -31.77383 -28.14399 -27.23497 -25.47764 -22.44226 -20.85751 -19.90321 -19.67834 -18.62812 -17.18341 -16.98268 -15.86309 -15.66981 -14.88228 -14.47734 -14.08313 -13.91476 -13.83714 -13.53637 -13.15308 -13.02895 -12.86471 -12.71637 -11.94243 -11.58604 -11.52163 -10.93872 -10.71022 -10.51924 -10.00642 -9.39732 -8.89421 -8.67825 -6.65442 0.52571 0.96762 1.41158 1.41621 1.56503 1.59200 1.71087 1.83471 2.15916 2.41011 2.52965 3.04921 3.93310 4.02663 4.47618 4.59496 4.90173 4.97406 5.00016 5.06505 5.10637 5.32220 5.44693 5.55133 5.79382 5.98962 6.31179 6.42369 6.53054 6.66251 6.86742 8.04126 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.051845 B = 0.006680 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.937450 B = 4190.755666 C = 4662.104905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C -0.247 4.247 3 C 0.077 3.923 4 N -0.464 5.464 5 H 0.456 0.544 6 N -0.321 5.321 7 C 0.127 3.873 8 C 0.183 3.817 9 C -0.391 4.391 10 C -0.033 4.033 11 C -0.389 4.389 12 H 0.101 0.899 13 C 0.018 3.982 14 N -0.792 5.792 15 Si 1.014 2.986 16 H -0.257 1.257 17 H -0.257 1.257 18 H -0.255 1.255 19 S 0.311 5.689 20 N -0.666 5.666 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.037 0.963 24 H 0.232 0.768 25 H 0.119 0.881 26 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.179 6.908 -1.212 7.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.259 4.259 3 C -0.071 4.071 4 N -0.175 5.175 5 H 0.303 0.697 6 N -0.147 5.147 7 C -0.041 4.041 8 C 0.015 3.985 9 C -0.424 4.424 10 C -0.160 4.160 11 C -0.428 4.428 12 H 0.119 0.881 13 C -0.203 4.203 14 N -0.419 5.419 15 Si 0.832 3.168 16 H -0.182 1.182 17 H -0.181 1.181 18 H -0.178 1.178 19 S 0.464 5.536 20 N -0.496 5.496 21 H 0.072 0.928 22 H 0.104 0.896 23 H 0.056 0.944 24 H 0.249 0.751 25 H 0.137 0.863 26 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.137 6.466 -0.227 6.471 hybrid contribution 1.616 0.233 -0.794 1.816 sum 1.753 6.699 -1.021 6.999 Atomic orbital electron populations 1.19881 0.88577 1.01534 1.01203 1.20545 0.98462 0.90948 1.15990 1.22908 0.83330 1.00850 1.00001 1.46188 1.08334 1.04279 1.58674 0.69702 1.77462 1.19663 0.90792 1.26820 1.20399 0.91064 0.92664 0.99970 1.18117 0.90199 0.91095 0.99053 1.20961 1.04188 0.91714 1.25571 1.24034 0.98206 0.96708 0.97037 1.19491 1.03050 0.89549 1.30679 0.88135 1.27266 0.94093 1.06267 0.92669 1.69076 1.09188 1.35514 1.28150 0.84683 0.79156 0.73198 0.79747 1.18153 1.18095 1.17829 1.81657 1.19077 0.94361 1.58492 1.71921 1.22902 1.18194 1.36592 0.92845 0.89552 0.94427 0.75129 0.86294 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.86 9.68 71.24 0.69 -1.17 15 2 C -0.25 -9.27 6.12 -19.95 -0.12 -9.40 15 3 C 0.08 2.01 11.88 83.47 0.99 3.00 15 4 N -0.46 -13.26 7.35 -57.67 -0.42 -13.68 15 5 H 0.46 8.52 8.96 -213.34 -1.91 6.61 15 6 N -0.32 -13.65 12.65 -48.14 -0.61 -14.26 15 7 C 0.13 5.97 6.95 42.53 0.30 6.26 15 8 C 0.18 9.98 6.48 41.99 0.27 10.26 15 9 C -0.39 -22.07 10.29 22.61 0.23 -21.84 15 10 C -0.03 -1.86 6.41 23.13 0.15 -1.71 15 11 C -0.39 -20.18 9.40 23.21 0.22 -19.97 15 12 H 0.10 4.93 7.85 -2.91 -0.02 4.91 15 13 C 0.02 0.82 5.50 85.33 0.47 1.29 15 14 N -0.79 -37.47 10.97 21.87 0.24 -37.23 15 15 Si 1.01 33.97 29.56 68.60 2.03 36.00 15 16 H -0.26 -8.32 7.11 99.48 0.71 -7.62 15 17 H -0.26 -7.98 7.11 99.48 0.71 -7.27 15 18 H -0.25 -8.38 7.11 99.48 0.71 -7.67 15 19 S 0.31 16.90 20.79 -56.49 -1.17 15.72 15 20 N -0.67 -36.57 9.66 -71.06 -0.69 -37.26 15 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.04 1.55 7.17 -2.39 -0.02 1.53 15 24 H 0.23 3.08 8.06 -2.91 -0.02 3.06 15 25 H 0.12 6.62 8.06 -2.91 -0.02 6.59 15 26 H 0.31 12.88 8.29 -92.71 -0.77 12.11 15 Total: -1.00 -69.64 249.68 1.88 -67.76 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.69 Total: 16.22 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.19 Total: -33.27 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -1.48 Total: -102.43 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 16.90 SS G_CDS: -1.17 Total: 15.72 kcal Total: -69.64 1.88 -67.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259439738.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.311 kcal (2) G-P(sol) polarization free energy of solvation -69.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds