Wall clock time and date at job start Mon Mar 30 2020 03:26:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.35086 * 126.07858 * 2 1
4 4 N 1.35033 * 107.98166 * 180.14900 * 3 2 1
5 5 H 0.97001 * 125.93617 * 179.87882 * 4 3 2
6 6 N 1.40072 * 108.13541 * 359.60665 * 4 3 2
7 7 C 1.31619 * 108.10734 * 0.24751 * 6 4 3
8 8 C 1.48446 * 126.03628 * 180.02562 * 7 6 4
9 9 C 1.38025 * 121.15957 * 334.71000 * 8 7 6
10 10 C 1.39851 * 110.98869 * 179.79688 * 9 8 7
11 11 C 1.40172 * 127.94612 * 180.16339 * 10 9 8
12 12 H 1.07993 * 120.00109 * 0.32998 * 11 10 9
13 13 C 1.40179 * 119.99347 * 180.32879 * 11 10 9
14 14 N 1.30748 * 120.00589 * 0.02562 * 13 11 10
15 15 Si 1.86806 * 119.99706 * 180.02562 * 13 11 10
16 16 H 1.48494 * 109.47017 * 89.99938 * 15 13 11
17 17 H 1.48497 * 109.47234 * 210.00560 * 15 13 11
18 18 H 1.48507 * 109.46817 * 330.00048 * 15 13 11
19 19 S 1.77032 * 104.10140 * 0.41454 * 10 9 8
20 20 N 1.30643 * 121.16513 * 154.99476 * 8 7 6
21 21 H 1.09000 * 109.47269 * 270.28609 * 1 2 3
22 22 H 1.09000 * 109.47055 * 30.27965 * 1 2 3
23 23 H 1.08996 * 109.47170 * 150.28481 * 1 2 3
24 24 H 1.08004 * 126.00936 * 0.02562 * 3 2 1
25 25 H 1.08001 * 124.50785 * 359.97384 * 9 8 7
26 26 H 0.97003 * 120.00414 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3025 1.0918 0.0000
4 7 3.5861 0.6723 -0.0033
5 1 4.3712 1.2420 -0.0058
6 7 3.5870 -0.7284 0.0037
7 6 2.3363 -1.1383 0.0056
8 6 1.8803 -2.5510 0.0131
9 6 2.6774 -3.5614 -0.4858
10 6 2.0439 -4.8027 -0.3695
11 6 2.5305 -6.0585 -0.7582
12 1 3.5105 -6.1436 -1.2039
13 6 1.7449 -7.2039 -0.5684
14 7 0.5583 -7.1009 -0.0292
15 14 2.3936 -8.8776 -1.0857
16 1 3.1275 -9.4959 0.0475
17 1 1.2569 -9.7504 -1.4746
18 1 3.3122 -8.7167 -2.2415
19 16 0.4832 -4.4226 0.3746
20 7 0.7084 -2.8806 0.4872
21 1 -0.3634 0.0051 1.0276
22 1 -0.3633 0.8875 -0.5182
23 1 -0.3633 -0.8925 -0.5094
24 1 1.9704 2.1195 0.0004
25 1 3.6607 -3.4134 -0.9071
26 1 0.0145 -7.8934 0.1018
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259439738.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:26:36
Heat of formation + Delta-G solvation = 63.553277 kcal
Electronic energy + Delta-G solvation = -13557.695923 eV
Core-core repulsion = 11148.658843 eV
Total energy + Delta-G solvation = -2409.037080 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 235.047 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-42.05070 -38.87883 -36.11305 -33.37665 -32.21043 -31.77383 -28.14399 -27.23497
-25.47764 -22.44226 -20.85751 -19.90321 -19.67834 -18.62812 -17.18341 -16.98268
-15.86309 -15.66981 -14.88228 -14.47734 -14.08313 -13.91476 -13.83714 -13.53637
-13.15308 -13.02895 -12.86471 -12.71637 -11.94243 -11.58604 -11.52163 -10.93872
-10.71022 -10.51924 -10.00642 -9.39732 -8.89421 -8.67825 -6.65442 0.52571
0.96762 1.41158 1.41621 1.56503 1.59200 1.71087 1.83471 2.15916
2.41011 2.52965 3.04921 3.93310 4.02663 4.47618 4.59496 4.90173
4.97406 5.00016 5.06505 5.10637 5.32220 5.44693 5.55133 5.79382
5.98962 6.31179 6.42369 6.53054 6.66251 6.86742 8.04126
Molecular weight = 235.05amu
Principal moments of inertia in cm(-1)
A = 0.051845 B = 0.006680 C = 0.006004
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 539.937450 B = 4190.755666 C = 4662.104905
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 C -0.247 4.247
3 C 0.077 3.923
4 N -0.464 5.464
5 H 0.456 0.544
6 N -0.321 5.321
7 C 0.127 3.873
8 C 0.183 3.817
9 C -0.391 4.391
10 C -0.033 4.033
11 C -0.389 4.389
12 H 0.101 0.899
13 C 0.018 3.982
14 N -0.792 5.792
15 Si 1.014 2.986
16 H -0.257 1.257
17 H -0.257 1.257
18 H -0.255 1.255
19 S 0.311 5.689
20 N -0.666 5.666
21 H 0.053 0.947
22 H 0.086 0.914
23 H 0.037 0.963
24 H 0.232 0.768
25 H 0.119 0.881
26 H 0.313 0.687
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.179 6.908 -1.212 7.112
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.112 4.112
2 C -0.259 4.259
3 C -0.071 4.071
4 N -0.175 5.175
5 H 0.303 0.697
6 N -0.147 5.147
7 C -0.041 4.041
8 C 0.015 3.985
9 C -0.424 4.424
10 C -0.160 4.160
11 C -0.428 4.428
12 H 0.119 0.881
13 C -0.203 4.203
14 N -0.419 5.419
15 Si 0.832 3.168
16 H -0.182 1.182
17 H -0.181 1.181
18 H -0.178 1.178
19 S 0.464 5.536
20 N -0.496 5.496
21 H 0.072 0.928
22 H 0.104 0.896
23 H 0.056 0.944
24 H 0.249 0.751
25 H 0.137 0.863
26 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 0.137 6.466 -0.227 6.471
hybrid contribution 1.616 0.233 -0.794 1.816
sum 1.753 6.699 -1.021 6.999
Atomic orbital electron populations
1.19881 0.88577 1.01534 1.01203 1.20545 0.98462 0.90948 1.15990
1.22908 0.83330 1.00850 1.00001 1.46188 1.08334 1.04279 1.58674
0.69702 1.77462 1.19663 0.90792 1.26820 1.20399 0.91064 0.92664
0.99970 1.18117 0.90199 0.91095 0.99053 1.20961 1.04188 0.91714
1.25571 1.24034 0.98206 0.96708 0.97037 1.19491 1.03050 0.89549
1.30679 0.88135 1.27266 0.94093 1.06267 0.92669 1.69076 1.09188
1.35514 1.28150 0.84683 0.79156 0.73198 0.79747 1.18153 1.18095
1.17829 1.81657 1.19077 0.94361 1.58492 1.71921 1.22902 1.18194
1.36592 0.92845 0.89552 0.94427 0.75129 0.86294 0.87444
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -1.86 9.68 71.24 0.69 -1.17 15
2 C -0.25 -9.27 6.12 -19.95 -0.12 -9.40 15
3 C 0.08 2.01 11.88 83.47 0.99 3.00 15
4 N -0.46 -13.26 7.35 -57.67 -0.42 -13.68 15
5 H 0.46 8.52 8.96 -213.34 -1.91 6.61 15
6 N -0.32 -13.65 12.65 -48.14 -0.61 -14.26 15
7 C 0.13 5.97 6.95 42.53 0.30 6.26 15
8 C 0.18 9.98 6.48 41.99 0.27 10.26 15
9 C -0.39 -22.07 10.29 22.61 0.23 -21.84 15
10 C -0.03 -1.86 6.41 23.13 0.15 -1.71 15
11 C -0.39 -20.18 9.40 23.21 0.22 -19.97 15
12 H 0.10 4.93 7.85 -2.91 -0.02 4.91 15
13 C 0.02 0.82 5.50 85.33 0.47 1.29 15
14 N -0.79 -37.47 10.97 21.87 0.24 -37.23 15
15 Si 1.01 33.97 29.56 68.60 2.03 36.00 15
16 H -0.26 -8.32 7.11 99.48 0.71 -7.62 15
17 H -0.26 -7.98 7.11 99.48 0.71 -7.27 15
18 H -0.25 -8.38 7.11 99.48 0.71 -7.67 15
19 S 0.31 16.90 20.79 -56.49 -1.17 15.72 15
20 N -0.67 -36.57 9.66 -71.06 -0.69 -37.26 15
21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15
22 H 0.09 2.19 8.14 -2.39 -0.02 2.17 15
23 H 0.04 1.55 7.17 -2.39 -0.02 1.53 15
24 H 0.23 3.08 8.06 -2.91 -0.02 3.06 15
25 H 0.12 6.62 8.06 -2.91 -0.02 6.59 15
26 H 0.31 12.88 8.29 -92.71 -0.77 12.11 15
Total: -1.00 -69.64 249.68 1.88 -67.76
By element:
Atomic # 1 Polarization: 16.90 SS G_CDS: -0.69 Total: 16.22 kcal
Atomic # 6 Polarization: -36.47 SS G_CDS: 3.19 Total: -33.27 kcal
Atomic # 7 Polarization: -100.95 SS G_CDS: -1.48 Total: -102.43 kcal
Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal
Atomic # 16 Polarization: 16.90 SS G_CDS: -1.17 Total: 15.72 kcal
Total: -69.64 1.88 -67.76 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259439738.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.311 kcal
(2) G-P(sol) polarization free energy of solvation -69.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.671 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.758 kcal
(6) G-S(sol) free energy of system = (1) + (5) 63.553 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds