Wall clock time and date at job start Mon Mar 30 2020 03:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35265 * 126.19822 * 2 1 4 4 C 1.40002 * 107.96936 * 180.12292 * 3 2 1 5 5 N 1.30812 * 108.38901 * 359.55978 * 4 3 2 6 6 N 1.35957 * 126.20336 * 179.63000 * 2 1 3 7 7 C 1.39058 * 126.10576 * 0.02562 * 6 2 1 8 8 N 1.29429 * 125.01310 * 179.97438 * 7 6 2 9 9 C 1.33628 * 115.92244 * 179.97438 * 8 7 6 10 10 C 1.41087 * 122.83900 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99862 * 174.03133 * 10 9 8 12 12 C 1.39665 * 120.00554 * 354.02358 * 10 9 8 13 13 N 1.31058 * 119.99573 * 6.17995 * 12 10 9 14 14 Si 1.86797 * 120.00323 * 186.17705 * 12 10 9 15 15 H 1.48507 * 109.46975 * 94.98666 * 14 12 10 16 16 H 1.48494 * 109.47117 * 214.98399 * 14 12 10 17 17 H 1.48498 * 109.47247 * 334.98889 * 14 12 10 18 18 C 1.37782 * 114.31398 * 359.97438 * 9 8 7 19 19 S 1.70974 * 108.93541 * 359.75226 * 18 9 8 20 20 H 1.09005 * 109.47275 * 270.36371 * 1 2 3 21 21 H 1.08999 * 109.47206 * 30.36657 * 1 2 3 22 22 H 1.09003 * 109.47459 * 150.36578 * 1 2 3 23 23 H 1.07998 * 126.01349 * 359.97438 * 3 2 1 24 24 H 1.08004 * 125.80464 * 179.82847 * 4 3 2 25 25 H 0.96996 * 119.99781 * 179.97438 * 13 12 10 26 26 H 1.07996 * 125.52837 * 179.97438 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3058 1.0916 0.0000 4 6 3.6355 0.6536 -0.0029 5 7 3.6392 -0.6545 0.0050 6 7 2.3100 -1.0971 0.0071 7 6 1.8874 -2.4218 0.0151 8 7 2.6716 -3.4515 0.0213 9 6 2.0695 -4.6444 0.0291 10 6 2.7830 -5.8615 0.0360 11 1 2.2537 -6.7972 0.1394 12 6 4.1739 -5.8565 -0.0911 13 7 4.8274 -4.7205 -0.0949 14 14 5.1026 -7.4688 -0.2556 15 1 5.3267 -7.7666 -1.6931 16 1 6.4116 -7.3590 0.4370 17 1 4.3079 -8.5627 0.3584 18 6 0.6930 -4.5850 0.0299 19 16 0.2083 -2.9454 0.0272 20 1 -0.3634 0.0065 1.0277 21 1 -0.3633 0.8867 -0.5195 22 1 -0.3634 -0.8932 -0.5081 23 1 1.9758 2.1199 -0.0004 24 1 4.5097 1.2879 -0.0062 25 1 5.7933 -4.7170 -0.1828 26 1 0.0282 -5.4361 0.0353 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259691466.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:53 Heat of formation + Delta-G solvation = 100.846222 kcal Electronic energy + Delta-G solvation = -13854.432905 eV Core-core repulsion = 11447.012969 eV Total energy + Delta-G solvation = -2407.419937 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.32921 -39.74995 -35.41400 -34.11766 -32.93782 -30.42126 -28.04266 -27.63256 -25.32946 -22.67872 -21.74526 -20.24722 -19.25089 -18.26229 -17.10628 -16.69589 -16.61686 -15.56262 -14.97509 -14.86427 -14.56629 -14.08849 -13.72165 -13.62910 -13.54810 -13.06234 -12.98902 -12.68926 -12.15699 -11.61757 -11.51711 -11.41894 -10.94354 -10.16253 -9.92608 -9.77881 -8.98047 -8.50568 -6.48487 -0.13794 0.20608 1.09692 1.33131 1.42649 1.45946 1.51826 1.73532 1.89734 2.19091 2.33369 3.37154 3.49535 3.83615 4.22815 4.46757 4.64842 4.68027 4.81548 5.00653 5.05569 5.16218 5.21281 5.32687 5.73463 6.00708 6.07519 6.46747 6.66096 6.80997 7.54239 8.37309 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.034253 B = 0.008581 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.242881 B = 3262.162944 C = 4061.739181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.063 3.937 3 C -0.249 4.249 4 C 0.045 3.955 5 N -0.325 5.325 6 N -0.310 5.310 7 C 0.241 3.759 8 N -0.447 5.447 9 C 0.206 3.794 10 C -0.467 4.467 11 H 0.095 0.905 12 C 0.020 3.980 13 N -0.782 5.782 14 Si 0.996 3.004 15 H -0.263 1.263 16 H -0.269 1.269 17 H -0.250 1.250 18 C -0.506 4.506 19 S 0.140 5.860 20 H 0.102 0.898 21 H 0.132 0.868 22 H 0.065 0.935 23 H 0.201 0.799 24 H 0.224 0.776 25 H 0.279 0.721 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.184 9.935 -0.198 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.060 4.060 3 C -0.278 4.278 4 C -0.143 4.143 5 N -0.144 5.144 6 N -0.091 5.091 7 C -0.128 4.128 8 N -0.167 5.167 9 C 0.084 3.916 10 C -0.500 4.500 11 H 0.113 0.887 12 C -0.199 4.199 13 N -0.405 5.405 14 Si 0.816 3.184 15 H -0.188 1.188 16 H -0.194 1.194 17 H -0.173 1.173 18 C -0.645 4.645 19 S 0.384 5.616 20 H 0.120 0.880 21 H 0.151 0.849 22 H 0.084 0.916 23 H 0.218 0.782 24 H 0.240 0.760 25 H 0.089 0.911 26 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.638 9.404 -0.187 10.966 hybrid contribution 0.819 -1.066 -0.071 1.346 sum -4.819 8.338 -0.258 9.634 Atomic orbital electron populations 1.20842 0.84352 1.05089 1.05371 1.22330 0.96810 0.85352 1.01508 1.21761 0.90856 1.00025 1.15119 1.24910 1.00526 0.91337 0.97570 1.77865 0.96974 1.14858 1.24661 1.45288 1.05160 1.01606 1.57045 1.24784 0.94110 0.87203 1.06734 1.67382 1.35015 0.97956 1.16315 1.18185 0.89167 0.90356 0.93940 1.19389 0.92447 0.92107 1.46089 0.88678 1.27094 0.98797 1.01903 0.92137 1.70316 1.09290 1.29078 1.31806 0.84992 0.77407 0.76674 0.79361 1.18752 1.19385 1.17304 1.25858 0.97874 1.00688 1.40034 1.81919 1.03353 0.99135 1.77240 0.88007 0.84929 0.91644 0.78193 0.76019 0.91086 0.82651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 9.41 71.23 0.67 -1.57 15 2 C 0.06 2.05 6.92 41.23 0.29 2.34 15 3 C -0.25 -6.66 10.72 22.01 0.24 -6.43 15 4 C 0.05 1.45 12.02 85.27 1.02 2.48 15 5 N -0.32 -15.00 12.51 -56.95 -0.71 -15.71 15 6 N -0.31 -14.04 3.78 -182.12 -0.69 -14.73 15 7 C 0.24 12.38 8.31 179.24 1.49 13.87 15 8 N -0.45 -26.97 8.51 -190.37 -1.62 -28.59 15 9 C 0.21 12.20 6.46 39.46 0.25 12.46 15 10 C -0.47 -27.05 9.22 23.31 0.21 -26.84 15 11 H 0.10 5.12 7.85 -2.91 -0.02 5.10 15 12 C 0.02 1.10 5.48 85.15 0.47 1.57 15 13 N -0.78 -46.45 11.71 21.79 0.26 -46.19 15 14 Si 1.00 40.91 29.56 68.60 2.03 42.94 15 15 H -0.26 -10.40 7.11 99.48 0.71 -9.69 15 16 H -0.27 -10.61 7.11 99.48 0.71 -9.90 15 17 H -0.25 -9.66 7.11 99.48 0.71 -8.95 15 18 C -0.51 -25.89 10.98 67.71 0.74 -25.15 15 19 S 0.14 5.87 19.31 -56.49 -1.09 4.77 15 20 H 0.10 2.01 8.14 -2.38 -0.02 1.99 15 21 H 0.13 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.07 1.72 5.09 -12.40 -0.06 1.66 15 23 H 0.20 3.22 8.06 -2.91 -0.02 3.20 15 24 H 0.22 4.96 8.06 -2.91 -0.02 4.94 15 25 H 0.28 15.18 8.30 -92.71 -0.77 14.41 15 26 H 0.16 7.37 8.06 -2.91 -0.02 7.35 15 Total: -1.00 -77.52 247.94 4.71 -72.81 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.16 Total: 11.97 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 5.39 Total: -27.27 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -2.77 Total: -105.22 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 5.87 SS G_CDS: -1.09 Total: 4.77 kcal Total: -77.52 4.71 -72.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259691466.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.654 kcal (2) G-P(sol) polarization free energy of solvation -77.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds