Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.28695 * 124.59001 * 2 1 4 4 C 1.33558 * 115.86000 * 180.19357 * 3 2 1 5 5 C 1.46938 * 123.29863 * 179.82921 * 4 3 2 6 6 N 1.36374 * 126.68400 * 154.67787 * 5 4 3 7 7 H 0.97006 * 125.80939 * 0.02570 * 6 5 4 8 8 N 1.39855 * 108.39608 * 180.02562 * 6 5 4 9 9 C 1.30205 * 109.69289 * 0.02562 * 8 6 5 10 10 C 1.40955 * 126.68600 * 334.70604 * 5 4 3 11 11 C 1.40914 * 126.62594 * 0.24146 * 10 5 4 12 12 H 1.07998 * 119.99862 * 340.54629 * 11 10 5 13 13 C 1.39684 * 119.99722 * 160.54991 * 11 10 5 14 14 N 1.31078 * 119.99541 * 164.21025 * 13 11 10 15 15 Si 1.86801 * 120.00137 * 344.21051 * 13 11 10 16 16 H 1.48495 * 109.46884 * 91.53132 * 15 13 11 17 17 H 1.48494 * 109.47049 * 211.53064 * 15 13 11 18 18 H 1.48502 * 109.46876 * 331.53123 * 15 13 11 19 19 C 1.36632 * 113.39894 * 359.55929 * 4 3 2 20 20 S 1.70724 * 124.59227 * 179.73745 * 2 1 3 21 21 H 1.09000 * 109.46686 * 180.24001 * 1 2 3 22 22 H 1.08999 * 109.46848 * 300.23789 * 1 2 3 23 23 H 1.09000 * 109.47025 * 60.24485 * 1 2 3 24 24 H 1.08000 * 125.73477 * 180.02562 * 9 8 6 25 25 H 0.96998 * 119.99322 * 179.97438 * 14 13 11 26 26 H 1.08000 * 125.64915 * 180.25177 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2377 1.0595 0.0000 4 6 3.5578 0.8568 -0.0041 5 6 4.5415 1.9482 -0.0084 6 7 5.8228 1.8920 0.4553 7 1 6.2500 1.1157 0.8501 8 7 6.4164 3.1440 0.2649 9 6 5.5617 3.9551 -0.2890 10 6 4.3446 3.2575 -0.4920 11 6 3.1638 3.7747 -1.0612 12 1 2.4123 3.1032 -1.4491 13 6 2.9656 5.1560 -1.1235 14 7 2.0417 5.6505 -1.9110 15 14 4.0169 6.2984 -0.0847 16 1 5.2100 6.7175 -0.8632 17 1 3.2241 7.4968 0.2897 18 1 4.4523 5.5888 1.1450 19 6 3.9038 -0.4650 0.0021 20 16 2.4763 -1.4054 0.0064 21 1 -0.3633 -1.0277 0.0043 22 1 -0.3633 0.5175 0.8878 23 1 -0.3633 0.5100 -0.8922 24 1 5.7489 4.9860 -0.5510 25 1 1.9038 6.6097 -1.9540 26 1 4.9122 -0.8517 0.0042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706332.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = 107.357370 kcal Electronic energy + Delta-G solvation = -13866.880549 eV Core-core repulsion = 11459.742957 eV Total energy + Delta-G solvation = -2407.137592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74478 -38.51765 -33.58397 -32.13759 -30.54350 -29.42438 -27.43930 -25.19525 -23.07596 -20.89358 -20.07275 -18.96654 -17.86755 -16.51198 -15.71514 -14.84509 -14.44116 -14.18654 -13.69895 -13.33584 -13.19083 -12.88623 -12.21069 -12.14766 -11.80860 -11.44847 -10.99725 -10.92831 -10.71805 -9.99723 -9.39692 -9.30040 -8.95724 -8.90751 -8.78705 -8.03174 -7.24500 -6.83975 -4.11408 1.20815 1.97002 2.41205 2.56489 3.04722 3.18791 3.28820 3.65106 3.83296 3.99617 4.11778 4.74694 5.29387 5.46946 5.72577 5.75653 5.77862 6.01350 6.06583 6.17832 6.50967 6.93113 7.05100 7.17359 7.57918 8.35221 8.47689 8.55593 8.68520 8.74388 9.01496 10.19614 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.009537 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.356278 B = 2935.286543 C = 3773.696150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.034 3.966 3 N -0.427 5.427 4 C 0.197 3.803 5 C -0.060 4.060 6 N -0.489 5.489 7 H 0.420 0.580 8 N -0.275 5.275 9 C -0.035 4.035 10 C 0.022 3.978 11 C -0.387 4.387 12 H 0.102 0.898 13 C 0.079 3.921 14 N -0.811 5.811 15 Si 0.901 3.099 16 H -0.267 1.267 17 H -0.287 1.287 18 H -0.247 1.247 19 C -0.357 4.357 20 S 0.111 5.889 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.163 0.837 25 H 0.283 0.717 26 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -8.827 3.288 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.246 4.246 3 N -0.141 5.141 4 C 0.066 3.934 5 C -0.180 4.180 6 N -0.207 5.207 7 H 0.261 0.739 8 N -0.099 5.099 9 C -0.224 4.224 10 C 0.011 3.989 11 C -0.419 4.419 12 H 0.120 0.880 13 C -0.138 4.138 14 N -0.437 5.437 15 Si 0.728 3.272 16 H -0.194 1.194 17 H -0.214 1.214 18 H -0.171 1.171 19 C -0.497 4.497 20 S 0.365 5.635 21 H 0.091 0.909 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.180 0.820 25 H 0.094 0.906 26 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.757 -9.243 3.584 9.942 hybrid contribution 0.620 1.055 0.211 1.242 sum -0.136 -8.188 3.795 9.025 Atomic orbital electron populations 1.20353 0.85874 1.02544 1.04398 1.27068 1.01705 0.91078 1.04781 1.66890 1.03797 1.29361 1.14075 1.18028 0.87897 0.89415 0.98078 1.17888 0.86296 0.95753 1.18098 1.45297 1.09847 1.10115 1.55433 0.73852 1.76195 1.22858 0.90860 1.19941 1.23744 0.93405 0.99497 1.05749 1.18221 0.93778 0.89970 0.96956 1.18818 1.01501 0.91923 1.29659 0.88044 1.26014 0.95008 0.98926 0.93861 1.69760 1.29214 1.15029 1.29686 0.86604 0.79268 0.78854 0.82460 1.19395 1.21405 1.17094 1.26061 1.03088 0.96575 1.23960 1.82151 0.97381 1.13706 1.70293 0.90930 0.89836 0.89566 0.81993 0.90616 0.82219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.47 36.01 0.38 -0.57 15 2 C 0.03 0.60 7.33 -13.59 -0.10 0.50 15 3 N -0.43 -9.53 9.37 -8.28 -0.08 -9.61 15 4 C 0.20 4.40 6.62 -84.17 -0.56 3.84 15 5 C -0.06 -1.46 7.12 -81.30 -0.58 -2.04 15 6 N -0.49 -10.65 7.37 33.88 0.25 -10.40 15 7 H 0.42 7.49 8.96 -182.78 -1.64 5.85 15 8 N -0.28 -6.45 12.57 30.92 0.39 -6.06 15 9 C -0.04 -0.87 9.22 -16.90 -0.16 -1.02 15 10 C 0.02 0.58 5.50 -106.52 -0.59 -0.01 15 11 C -0.39 -10.75 9.32 -38.03 -0.35 -11.11 15 12 H 0.10 3.03 7.24 -52.49 -0.38 2.65 15 13 C 0.08 2.10 5.50 -17.33 -0.10 2.00 15 14 N -0.81 -21.76 13.94 55.54 0.77 -20.99 15 15 Si 0.90 20.42 24.52 -169.99 -4.17 16.25 15 16 H -0.27 -5.72 6.68 56.52 0.38 -5.34 15 17 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 18 H -0.25 -5.81 6.54 56.52 0.37 -5.44 15 19 C -0.36 -6.55 10.99 30.15 0.33 -6.22 15 20 S 0.11 1.68 22.89 -107.50 -2.46 -0.78 15 21 H 0.07 0.72 8.12 -51.93 -0.42 0.30 15 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 23 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.16 3.77 4.27 -52.49 -0.22 3.55 15 25 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 26 H 0.16 2.58 8.06 -52.49 -0.42 2.15 15 LS Contribution 244.27 15.07 3.68 3.68 Total: -1.00 -30.32 244.27 -6.45 -36.77 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.12 Total: 5.72 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.72 Total: -14.61 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: 1.33 Total: -47.05 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.17 Total: 16.25 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.46 Total: -0.78 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.32 -6.45 -36.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706332.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.132 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds