Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.28695 * 124.59001 * 2 1 4 4 C 1.33558 * 115.86000 * 180.19357 * 3 2 1 5 5 C 1.46938 * 123.29863 * 179.82921 * 4 3 2 6 6 N 1.36374 * 126.68400 * 154.67787 * 5 4 3 7 7 H 0.97006 * 125.80939 * 0.02570 * 6 5 4 8 8 N 1.39855 * 108.39608 * 180.02562 * 6 5 4 9 9 C 1.30205 * 109.69289 * 0.02562 * 8 6 5 10 10 C 1.40955 * 126.68600 * 334.70604 * 5 4 3 11 11 C 1.40914 * 126.62594 * 0.24146 * 10 5 4 12 12 H 1.07998 * 119.99862 * 340.54629 * 11 10 5 13 13 C 1.39684 * 119.99722 * 160.54991 * 11 10 5 14 14 N 1.31078 * 119.99541 * 164.21025 * 13 11 10 15 15 Si 1.86801 * 120.00137 * 344.21051 * 13 11 10 16 16 H 1.48495 * 109.46884 * 91.53132 * 15 13 11 17 17 H 1.48494 * 109.47049 * 211.53064 * 15 13 11 18 18 H 1.48502 * 109.46876 * 331.53123 * 15 13 11 19 19 C 1.36632 * 113.39894 * 359.55929 * 4 3 2 20 20 S 1.70724 * 124.59227 * 179.73745 * 2 1 3 21 21 H 1.09000 * 109.46686 * 180.24001 * 1 2 3 22 22 H 1.08999 * 109.46848 * 300.23789 * 1 2 3 23 23 H 1.09000 * 109.47025 * 60.24485 * 1 2 3 24 24 H 1.08000 * 125.73477 * 180.02562 * 9 8 6 25 25 H 0.96998 * 119.99322 * 179.97438 * 14 13 11 26 26 H 1.08000 * 125.64915 * 180.25177 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2377 1.0595 0.0000 4 6 3.5578 0.8568 -0.0041 5 6 4.5415 1.9482 -0.0084 6 7 5.8228 1.8920 0.4553 7 1 6.2500 1.1157 0.8501 8 7 6.4164 3.1440 0.2649 9 6 5.5617 3.9551 -0.2890 10 6 4.3446 3.2575 -0.4920 11 6 3.1638 3.7747 -1.0612 12 1 2.4123 3.1032 -1.4491 13 6 2.9656 5.1560 -1.1235 14 7 2.0417 5.6505 -1.9110 15 14 4.0169 6.2984 -0.0847 16 1 5.2100 6.7175 -0.8632 17 1 3.2241 7.4968 0.2897 18 1 4.4523 5.5888 1.1450 19 6 3.9038 -0.4650 0.0021 20 16 2.4763 -1.4054 0.0064 21 1 -0.3633 -1.0277 0.0043 22 1 -0.3633 0.5175 0.8878 23 1 -0.3633 0.5100 -0.8922 24 1 5.7489 4.9860 -0.5510 25 1 1.9038 6.6097 -1.9540 26 1 4.9122 -0.8517 0.0042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706332.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = 84.708453 kcal Electronic energy + Delta-G solvation = -13867.862680 eV Core-core repulsion = 11459.742957 eV Total energy + Delta-G solvation = -2408.119723 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.54419 -40.12018 -35.45909 -33.61000 -32.38255 -31.11540 -28.92001 -27.02710 -24.67939 -22.71905 -21.73131 -20.62816 -19.61016 -18.16529 -17.44505 -16.69698 -15.95779 -15.80094 -15.35558 -15.05771 -14.94569 -14.20524 -13.88914 -13.46434 -13.18352 -12.96443 -12.82907 -12.76763 -12.32218 -11.78985 -11.29861 -11.14496 -10.50906 -10.38760 -10.33099 -9.79558 -8.96565 -8.71976 -6.09352 -0.26907 0.60208 0.82106 0.94430 1.24176 1.40219 1.47820 1.81213 2.09728 2.18060 2.37839 3.30931 3.43732 3.98601 4.26550 4.31107 4.41513 4.65683 4.72448 4.73318 5.09435 5.21649 5.26860 5.35632 5.70891 6.43927 6.68480 6.73527 6.82767 7.06540 7.14197 8.38214 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.028438 B = 0.009537 C = 0.007418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.356278 B = 2935.286543 C = 3773.696150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.009 3.991 3 N -0.483 5.483 4 C 0.147 3.853 5 C -0.039 4.039 6 N -0.465 5.465 7 H 0.440 0.560 8 N -0.282 5.282 9 C -0.047 4.047 10 C -0.018 4.018 11 C -0.425 4.425 12 H 0.061 0.939 13 C 0.041 3.959 14 N -0.863 5.863 15 Si 0.955 3.045 16 H -0.247 1.247 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.336 4.336 20 S 0.236 5.764 21 H 0.113 0.887 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.172 0.828 25 H 0.289 0.711 26 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 -11.956 4.481 12.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.269 4.269 3 N -0.199 5.199 4 C 0.014 3.986 5 C -0.163 4.163 6 N -0.184 5.184 7 H 0.285 0.715 8 N -0.107 5.107 9 C -0.233 4.233 10 C -0.029 4.029 11 C -0.459 4.459 12 H 0.080 0.920 13 C -0.171 4.171 14 N -0.492 5.492 15 Si 0.780 3.220 16 H -0.172 1.172 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.477 4.477 20 S 0.492 5.508 21 H 0.132 0.868 22 H 0.105 0.895 23 H 0.098 0.902 24 H 0.188 0.812 25 H 0.099 0.901 26 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.018 -12.400 4.782 13.291 hybrid contribution 0.374 1.360 -0.046 1.411 sum 0.392 -11.040 4.736 12.020 Atomic orbital electron populations 1.20552 0.83310 1.05144 1.04268 1.27791 1.03703 0.91784 1.03666 1.66874 1.04324 1.32343 1.16332 1.18129 0.88149 0.90326 1.02028 1.18443 0.87148 0.95977 1.14733 1.45400 1.08990 1.10558 1.53428 0.71497 1.76188 1.22524 0.91088 1.20950 1.23816 0.92939 1.00197 1.06326 1.18390 0.94076 0.91529 0.98886 1.18553 1.02001 0.92210 1.33087 0.92044 1.26601 0.96171 0.99701 0.94605 1.69804 1.31745 1.15539 1.32092 0.85761 0.78642 0.77170 0.80420 1.17207 1.20304 1.18653 1.26736 1.06547 0.96163 1.18250 1.81760 0.93190 1.09673 1.66206 0.86847 0.89509 0.90236 0.81185 0.90111 0.79469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.76 10.47 71.24 0.75 -1.02 15 2 C 0.01 0.30 7.33 88.57 0.65 0.95 15 3 N -0.48 -21.54 9.37 -180.11 -1.69 -23.23 15 4 C 0.15 6.38 6.62 40.79 0.27 6.65 15 5 C -0.04 -1.90 7.12 41.38 0.29 -1.60 15 6 N -0.46 -19.47 7.37 -46.73 -0.34 -19.81 15 7 H 0.44 14.33 8.96 -213.47 -1.91 12.41 15 8 N -0.28 -12.97 12.57 -56.09 -0.70 -13.67 15 9 C -0.05 -2.33 9.22 85.80 0.79 -1.53 15 10 C -0.02 -0.96 5.50 -21.09 -0.12 -1.07 15 11 C -0.43 -25.13 9.32 23.27 0.22 -24.91 15 12 H 0.06 3.98 7.24 -2.91 -0.02 3.96 15 13 C 0.04 2.28 5.50 85.15 0.47 2.74 15 14 N -0.86 -49.25 13.94 21.79 0.30 -48.94 15 15 Si 0.96 43.61 24.52 68.60 1.68 45.29 15 16 H -0.25 -10.26 6.68 99.48 0.66 -9.59 15 17 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 18 H -0.26 -12.41 6.54 99.48 0.65 -11.76 15 19 C -0.34 -10.98 10.99 67.44 0.74 -10.24 15 20 S 0.24 5.99 22.89 -56.49 -1.29 4.69 15 21 H 0.11 1.76 8.12 -2.39 -0.02 1.74 15 22 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 24 H 0.17 7.96 4.27 -2.91 -0.01 7.94 15 25 H 0.29 14.85 8.30 -92.71 -0.77 14.08 15 26 H 0.19 4.99 8.06 -2.91 -0.02 4.97 15 Total: -1.00 -70.32 244.27 1.24 -69.08 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.78 Total: 16.63 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.06 Total: -30.03 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -2.43 Total: -105.66 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.68 Total: 45.29 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.29 Total: 4.69 kcal Total: -70.32 1.24 -69.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706332.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.790 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds