Wall clock time and date at job start Mon Mar 30 2020 03:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34653 * 126.32843 * 2 1 4 4 H 0.96999 * 125.77251 * 359.97438 * 3 2 1 5 5 N 1.39936 * 108.45705 * 180.02562 * 3 2 1 6 6 C 1.30482 * 108.95705 * 359.97438 * 5 3 2 7 7 C 1.38250 * 126.33599 * 179.68784 * 2 1 3 8 8 C 1.47234 * 126.42393 * 359.97438 * 7 2 1 9 9 S 1.72009 * 127.40669 * 354.26334 * 8 7 2 10 10 N 1.69391 * 96.23516 * 179.97438 * 9 8 7 11 11 C 1.29276 * 108.40839 * 0.02562 * 10 9 8 12 12 C 1.39793 * 117.06631 * 359.75132 * 11 10 9 13 13 C 1.40907 * 123.44389 * 180.27331 * 12 11 10 14 14 H 1.08000 * 119.99448 * 147.92912 * 13 12 11 15 15 C 1.39744 * 120.00084 * 327.92536 * 13 12 11 16 16 N 1.31046 * 119.99389 * 169.72186 * 15 13 12 17 17 Si 1.86793 * 120.00203 * 349.72191 * 15 13 12 18 18 H 1.48504 * 109.47158 * 88.71988 * 17 15 13 19 19 H 1.48498 * 109.47324 * 208.71557 * 17 15 13 20 20 H 1.48498 * 109.47286 * 328.71904 * 17 15 13 21 21 H 1.09002 * 109.46637 * 90.02868 * 1 2 3 22 22 H 1.08994 * 109.47406 * 330.02734 * 1 2 3 23 23 H 1.09003 * 109.46948 * 210.02563 * 1 2 3 24 24 H 1.08000 * 125.94974 * 180.02562 * 6 5 3 25 25 H 1.07999 * 121.46481 * 179.97438 * 11 10 9 26 26 H 0.97004 * 119.99999 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3047 1.0848 0.0000 4 1 2.0066 2.0079 -0.0004 5 7 3.6365 0.6554 -0.0006 6 6 3.6612 -0.6492 -0.0004 7 6 2.3261 -1.1137 0.0061 8 6 1.8898 -2.5198 0.0143 9 16 0.2817 -3.1141 0.1548 10 7 0.6852 -4.7573 0.0757 11 6 1.9680 -4.8571 -0.0500 12 6 2.6972 -3.6653 -0.0961 13 6 4.0985 -3.6172 -0.2358 14 1 4.5607 -2.7956 -0.7628 15 6 4.8901 -4.6326 0.3077 16 7 6.1647 -4.6996 0.0104 17 14 4.1316 -5.8940 1.4577 18 1 3.6042 -7.0332 0.6643 19 1 5.1651 -6.3861 2.4037 20 1 3.0224 -5.2657 2.2193 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 0.8902 0.5134 23 1 -0.3633 -0.8898 0.5142 24 1 4.5474 -1.2666 -0.0003 25 1 2.4545 -5.8188 -0.1199 26 1 6.7142 -5.4046 0.3872 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259843509.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:57 Heat of formation + Delta-G solvation = 96.452974 kcal Electronic energy + Delta-G solvation = -13986.014430 eV Core-core repulsion = 11578.403988 eV Total energy + Delta-G solvation = -2407.610442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.37077 -37.58470 -33.50513 -32.13649 -31.73774 -29.36505 -27.15563 -25.23646 -22.78096 -21.18303 -20.30234 -18.82469 -17.28825 -16.35691 -15.59639 -15.39009 -14.42784 -13.91902 -13.77633 -13.15632 -12.93848 -12.82010 -12.44757 -12.24855 -11.57950 -11.55036 -11.15794 -10.75595 -10.46443 -10.19845 -9.73329 -9.48777 -9.18706 -9.11881 -8.79425 -7.58507 -7.12811 -7.00956 -4.45593 1.60726 2.54574 2.81990 2.91327 3.07291 3.12814 3.19671 3.43009 3.46863 3.81887 3.95033 4.96600 5.23117 5.38899 5.47892 5.77509 5.96983 6.13724 6.35520 6.41619 6.56117 6.73473 6.95790 7.21512 7.42842 7.74836 7.85669 8.13158 8.33174 8.36211 8.62516 9.99756 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.026386 B = 0.011477 C = 0.008357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.898408 B = 2439.098135 C = 3349.850380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.036 3.964 3 N -0.481 5.481 4 H 0.429 0.571 5 N -0.313 5.313 6 C 0.068 3.932 7 C -0.087 4.087 8 C -0.263 4.263 9 S 0.146 5.854 10 N -0.476 5.476 11 C 0.063 3.937 12 C 0.011 3.989 13 C -0.407 4.407 14 H 0.104 0.896 15 C 0.081 3.919 16 N -0.805 5.805 17 Si 0.895 3.105 18 H -0.264 1.264 19 H -0.280 1.280 20 H -0.248 1.248 21 H 0.075 0.925 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.198 0.802 25 H 0.162 0.838 26 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 4.859 1.088 8.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.093 4.093 3 N -0.190 5.190 4 H 0.272 0.728 5 N -0.135 5.135 6 C -0.119 4.119 7 C -0.100 4.100 8 C -0.392 4.392 9 S 0.298 5.702 10 N -0.293 5.293 11 C -0.141 4.141 12 C -0.003 4.003 13 C -0.441 4.441 14 H 0.121 0.879 15 C -0.138 4.138 16 N -0.430 5.430 17 Si 0.721 3.279 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.171 1.171 21 H 0.094 0.906 22 H 0.083 0.917 23 H 0.104 0.896 24 H 0.215 0.785 25 H 0.179 0.821 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.830 5.525 1.305 9.671 hybrid contribution 1.215 -0.973 0.279 1.582 sum -6.615 4.551 1.584 8.184 Atomic orbital electron populations 1.20378 0.87910 1.03047 1.02913 1.21204 0.93701 0.87582 1.06773 1.45761 1.04348 1.07361 1.61538 0.72849 1.76982 0.96082 1.14148 1.26307 1.24516 0.98756 0.90682 0.97952 1.17723 0.91472 0.89314 1.11463 1.21941 0.95885 0.94050 1.27340 1.82614 1.12341 0.99486 1.75778 1.75957 1.17526 1.12502 1.23277 1.23067 0.90204 1.00401 1.00389 1.18171 0.96137 0.88314 0.97660 1.18935 0.88138 1.07661 1.29328 0.87873 1.26048 0.94810 0.97273 0.95668 1.69693 1.06586 1.30829 1.35920 0.86641 0.79920 0.80463 0.80864 1.18999 1.20644 1.17134 0.90630 0.91687 0.89624 0.78510 0.82135 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 9.87 36.00 0.36 -0.78 15 2 C 0.04 0.64 7.32 -81.35 -0.60 0.04 15 3 N -0.48 -7.90 7.31 33.96 0.25 -7.66 15 4 H 0.43 5.23 8.96 -182.72 -1.64 3.59 15 5 N -0.31 -6.18 12.63 30.88 0.39 -5.79 15 6 C 0.07 1.46 10.98 -16.94 -0.19 1.28 15 7 C -0.09 -1.85 6.12 -105.05 -0.64 -2.49 15 8 C -0.26 -6.02 6.57 -35.05 -0.23 -6.26 15 9 S 0.15 3.03 20.63 -107.50 -2.22 0.81 15 10 N -0.48 -10.90 11.96 29.72 0.36 -10.55 15 11 C 0.06 1.48 8.44 -18.05 -0.15 1.32 15 12 C 0.01 0.27 5.09 -107.42 -0.55 -0.27 15 13 C -0.41 -10.15 8.52 -38.01 -0.32 -10.48 15 14 H 0.10 2.67 5.80 -52.49 -0.30 2.36 15 15 C 0.08 1.97 5.50 -17.32 -0.10 1.87 15 16 N -0.81 -19.99 13.94 55.54 0.77 -19.21 15 17 Si 0.89 19.16 24.55 -169.99 -4.17 14.99 15 18 H -0.26 -5.37 6.58 56.52 0.37 -5.00 15 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 20 H -0.25 -5.58 6.77 56.52 0.38 -5.20 15 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.09 1.26 5.45 -49.53 -0.27 0.99 15 24 H 0.20 4.33 5.58 -52.49 -0.29 4.04 15 25 H 0.16 3.57 4.65 -52.49 -0.24 3.33 15 26 H 0.29 6.50 8.30 -40.82 -0.34 6.16 15 LS Contribution 234.90 15.07 3.54 3.54 Total: -1.00 -27.69 234.90 -6.28 -33.97 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.78 Total: 5.65 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -2.42 Total: -15.76 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 1.77 Total: -43.20 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -4.17 Total: 14.99 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.22 Total: 0.81 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -27.69 -6.28 -33.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259843509.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.422 kcal (2) G-P(sol) polarization free energy of solvation -27.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds