Wall clock time and date at job start Mon Mar 30 2020 03:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34725 * 124.79126 * 2 1 4 4 C 1.39367 * 108.92237 * 180.18321 * 3 2 1 5 5 C 1.41265 * 126.86123 * 179.86202 * 4 3 2 6 6 H 1.07995 * 120.00103 * 179.40725 * 5 4 3 7 7 C 1.39656 * 119.99977 * 359.68539 * 5 4 3 8 8 N 1.31088 * 119.99934 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00253 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46685 * 89.99948 * 9 7 5 11 11 H 1.48494 * 109.47357 * 210.00027 * 9 7 5 12 12 H 1.48494 * 109.47227 * 330.00545 * 9 7 5 13 13 C 1.46761 * 106.27757 * 359.60138 * 4 3 2 14 14 O 1.34464 * 145.69604 * 180.28611 * 13 4 3 15 15 C 1.35080 * 109.45416 * 179.97438 * 14 13 4 16 16 C 1.46336 * 125.62519 * 179.97438 * 15 14 13 17 17 O 1.21646 * 120.00293 * 179.97438 * 16 15 14 18 18 O 1.34932 * 120.00152 * 359.97345 * 16 15 14 19 19 C 1.36632 * 108.74733 * 359.95591 * 15 14 13 20 20 C 1.38400 * 124.79662 * 179.73663 * 2 1 3 21 21 H 1.09008 * 109.46640 * 270.26773 * 1 2 3 22 22 H 1.09000 * 109.47495 * 30.26173 * 1 2 3 23 23 H 1.09001 * 109.47109 * 150.26838 * 1 2 3 24 24 H 1.08000 * 125.53876 * 0.02569 * 3 2 1 25 25 H 0.96996 * 119.99846 * 179.97438 * 8 7 5 26 26 H 0.96701 * 113.99819 * 180.02562 * 18 16 15 27 27 H 1.08004 * 126.47371 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2337 1.1064 0.0000 4 6 3.5743 0.7253 -0.0042 5 6 4.6985 1.5808 -0.0083 6 1 5.6945 1.1636 -0.0017 7 6 4.5217 2.9661 -0.0151 8 7 3.3126 3.4726 -0.0171 9 14 6.0082 4.0974 -0.0198 10 1 6.4027 4.3904 -1.4212 11 1 5.6675 5.3653 0.6740 12 1 7.1361 3.4357 0.6838 13 6 3.5848 -0.7422 0.0029 14 8 4.3505 -1.8475 0.0086 15 6 3.5598 -2.9426 0.0141 16 6 4.0251 -4.3300 0.0206 17 8 3.2198 -5.2417 0.0257 18 8 5.3475 -4.5981 0.0210 19 6 2.2537 -2.5412 0.0129 20 6 2.2548 -1.1365 0.0052 21 1 -0.3633 0.0048 1.0278 22 1 -0.3634 0.8876 -0.5179 23 1 -0.3633 -0.8924 -0.5097 24 1 1.8702 2.1234 0.0004 25 1 3.1899 4.4347 -0.0214 26 1 5.5575 -5.5420 0.0252 27 1 1.3849 -3.1828 0.0167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260054202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:18 Heat of formation + Delta-G solvation = -29.488046 kcal Electronic energy + Delta-G solvation = -15873.778090 eV Core-core repulsion = 12985.660813 eV Total energy + Delta-G solvation = -2888.117277 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.79380 -39.68270 -38.13288 -35.90160 -33.76581 -31.42618 -31.01136 -27.94555 -26.78729 -23.94070 -23.43849 -20.50219 -19.69590 -19.56010 -17.79344 -17.29552 -16.13192 -15.88463 -15.57976 -14.79140 -14.55619 -14.32794 -13.79754 -13.46840 -12.81190 -12.44022 -12.06579 -11.94538 -11.44869 -11.35604 -11.31878 -11.01907 -10.77755 -10.67055 -10.04354 -9.88068 -9.56214 -8.87128 -7.29177 -6.83530 -6.55872 -4.10869 1.35925 3.05114 3.05483 3.10531 3.17283 3.23104 3.52960 3.61684 4.04399 4.05061 4.23326 5.37524 5.40000 5.46650 5.65779 5.76222 5.90291 5.93298 6.07300 6.47408 6.73871 6.92924 7.08872 7.20674 7.60565 7.88674 8.13219 8.16564 8.46718 8.74086 8.96448 9.04372 10.44564 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.007649 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.469883 B = 3659.759226 C = 4625.083439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.456 5.456 3 C -0.033 4.033 4 C 0.040 3.960 5 C -0.425 4.425 6 H 0.075 0.925 7 C 0.057 3.943 8 N -0.844 5.844 9 Si 0.921 3.079 10 H -0.273 1.273 11 H -0.280 1.280 12 H -0.266 1.266 13 C -0.014 4.014 14 O -0.148 6.148 15 C -0.097 4.097 16 C 0.572 3.428 17 O -0.518 6.518 18 O -0.496 6.496 19 C -0.074 4.074 20 C -0.061 4.061 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.207 0.793 25 H 0.275 0.725 26 H 0.406 0.594 27 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.444 -5.892 -0.035 6.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.144 5.144 3 C -0.159 4.159 4 C 0.034 3.966 5 C -0.459 4.459 6 H 0.093 0.907 7 C -0.152 4.152 8 N -0.476 5.476 9 Si 0.748 3.252 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.190 1.190 13 C -0.072 4.072 14 O -0.045 6.045 15 C -0.146 4.146 16 C 0.420 3.580 17 O -0.410 6.410 18 O -0.305 6.305 19 C -0.096 4.096 20 C -0.167 4.167 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.223 0.777 25 H 0.086 0.914 26 H 0.263 0.737 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.807 -5.463 -0.034 6.142 hybrid contribution 0.529 -0.160 0.008 0.553 sum -2.279 -5.623 -0.026 6.068 Atomic orbital electron populations 1.21676 0.79371 1.02684 1.01523 1.42582 1.04295 1.03283 1.64265 1.23498 0.88002 0.90296 1.14114 1.17505 0.93093 0.80884 1.05110 1.18791 0.92843 0.90056 1.44209 0.90653 1.25537 0.97045 0.98413 0.94158 1.69365 1.21797 1.13446 1.42993 0.86073 0.81437 0.78936 0.78804 1.19901 1.20588 1.19017 1.22000 0.86791 0.89502 1.08859 1.83916 1.33961 1.11778 1.74891 1.19864 0.88515 0.84824 1.21435 1.18907 0.80372 0.86608 0.72127 1.90938 1.55869 1.45249 1.48984 1.85164 1.25555 1.33843 1.85983 1.20304 0.95503 0.91343 1.02461 1.18487 0.91823 0.88845 1.17595 0.92760 0.90599 0.91728 0.77748 0.91413 0.73737 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.42 11.05 59.85 0.66 2.08 15 2 N -0.46 -9.90 3.14 -120.87 -0.38 -10.28 15 3 C -0.03 -0.81 10.31 -15.86 -0.16 -0.97 15 4 C 0.04 1.08 6.10 -104.88 -0.64 0.44 15 5 C -0.43 -11.55 9.43 -37.90 -0.36 -11.91 15 6 H 0.08 2.02 7.84 -52.49 -0.41 1.61 15 7 C 0.06 1.45 5.49 -17.34 -0.10 1.35 15 8 N -0.84 -21.19 10.34 55.53 0.57 -20.62 15 9 Si 0.92 19.35 29.56 -169.99 -5.02 14.33 15 10 H -0.27 -5.69 7.11 56.52 0.40 -5.28 15 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 12 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 13 C -0.01 -0.35 8.42 -35.96 -0.30 -0.65 15 14 O -0.15 -3.57 10.69 2.59 0.03 -3.54 15 15 C -0.10 -2.03 7.14 -36.91 -0.26 -2.29 15 16 C 0.57 10.19 8.27 33.99 0.28 10.47 15 17 O -0.52 -9.55 17.58 -19.38 -0.34 -9.89 15 18 O -0.50 -7.28 13.56 -42.80 -0.58 -7.86 15 19 C -0.07 -1.49 10.58 -39.32 -0.42 -1.91 15 20 C -0.06 -1.41 7.55 -83.88 -0.63 -2.04 15 21 H 0.05 0.77 8.14 -51.92 -0.42 0.35 15 22 H 0.08 1.06 8.13 -51.93 -0.42 0.64 15 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 24 H 0.21 5.05 5.70 -52.49 -0.30 4.75 15 25 H 0.27 6.35 8.30 -40.82 -0.34 6.01 15 26 H 0.41 3.46 8.98 45.56 0.41 3.87 15 27 H 0.15 2.53 8.06 -52.48 -0.42 2.10 15 LS Contribution 253.81 15.07 3.82 3.82 Total: -1.00 -30.52 253.81 -4.95 -35.48 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -1.13 Total: 4.00 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.93 Total: -5.44 kcal Atomic # 7 Polarization: -31.09 SS G_CDS: 0.20 Total: -30.90 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.89 Total: -21.30 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.52 -4.95 -35.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.991 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds