Wall clock time and date at job start Mon Mar 30 2020 03:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34725 * 124.79126 * 2 1 4 4 C 1.39367 * 108.92237 * 180.18321 * 3 2 1 5 5 C 1.41265 * 126.86123 * 179.86202 * 4 3 2 6 6 H 1.07995 * 120.00103 * 179.40725 * 5 4 3 7 7 C 1.39656 * 119.99977 * 359.68539 * 5 4 3 8 8 N 1.31088 * 119.99934 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00253 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.46685 * 89.99948 * 9 7 5 11 11 H 1.48494 * 109.47357 * 210.00027 * 9 7 5 12 12 H 1.48494 * 109.47227 * 330.00545 * 9 7 5 13 13 C 1.46761 * 106.27757 * 359.60138 * 4 3 2 14 14 O 1.34464 * 145.69604 * 180.28611 * 13 4 3 15 15 C 1.35080 * 109.45416 * 179.97438 * 14 13 4 16 16 C 1.46336 * 125.62519 * 179.97438 * 15 14 13 17 17 O 1.21646 * 120.00293 * 179.97438 * 16 15 14 18 18 O 1.34932 * 120.00152 * 359.97345 * 16 15 14 19 19 C 1.36632 * 108.74733 * 359.95591 * 15 14 13 20 20 C 1.38400 * 124.79662 * 179.73663 * 2 1 3 21 21 H 1.09008 * 109.46640 * 270.26773 * 1 2 3 22 22 H 1.09000 * 109.47495 * 30.26173 * 1 2 3 23 23 H 1.09001 * 109.47109 * 150.26838 * 1 2 3 24 24 H 1.08000 * 125.53876 * 0.02569 * 3 2 1 25 25 H 0.96996 * 119.99846 * 179.97438 * 8 7 5 26 26 H 0.96701 * 113.99819 * 180.02562 * 18 16 15 27 27 H 1.08004 * 126.47371 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2337 1.1064 0.0000 4 6 3.5743 0.7253 -0.0042 5 6 4.6985 1.5808 -0.0083 6 1 5.6945 1.1636 -0.0017 7 6 4.5217 2.9661 -0.0151 8 7 3.3126 3.4726 -0.0171 9 14 6.0082 4.0974 -0.0198 10 1 6.4027 4.3904 -1.4212 11 1 5.6675 5.3653 0.6740 12 1 7.1361 3.4357 0.6838 13 6 3.5848 -0.7422 0.0029 14 8 4.3505 -1.8475 0.0086 15 6 3.5598 -2.9426 0.0141 16 6 4.0251 -4.3300 0.0206 17 8 3.2198 -5.2417 0.0257 18 8 5.3475 -4.5981 0.0210 19 6 2.2537 -2.5412 0.0129 20 6 2.2548 -1.1365 0.0052 21 1 -0.3633 0.0048 1.0278 22 1 -0.3634 0.8876 -0.5179 23 1 -0.3633 -0.8924 -0.5097 24 1 1.8702 2.1234 0.0004 25 1 3.1899 4.4347 -0.0214 26 1 5.5575 -5.5420 0.0252 27 1 1.3849 -3.1828 0.0167 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260054202.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:17 Heat of formation + Delta-G solvation = -49.612723 kcal Electronic energy + Delta-G solvation = -15874.650761 eV Core-core repulsion = 12985.660813 eV Total energy + Delta-G solvation = -2888.989948 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.50687 -41.09020 -39.85003 -37.22448 -35.63038 -33.09891 -32.69169 -29.66961 -28.45187 -25.64282 -25.02576 -22.20240 -21.39456 -21.18914 -19.38752 -18.80855 -17.78650 -17.48350 -17.42120 -16.29202 -16.18294 -16.02826 -15.27001 -14.85678 -14.47886 -14.10867 -13.80217 -13.46483 -13.03810 -13.01586 -12.72193 -12.56575 -12.45440 -12.15150 -11.89983 -11.68448 -11.35057 -10.60998 -9.07769 -8.66024 -8.43906 -6.06361 -0.21243 1.38113 1.45202 1.47591 1.52752 1.58596 1.94127 1.96860 2.18813 2.32608 2.69365 3.40647 3.89778 4.07058 4.20186 4.38972 4.45561 4.56759 4.74734 5.04549 5.19128 5.20878 5.31413 5.43932 5.72264 6.13316 6.32220 6.59991 6.85166 6.91234 7.08232 7.09833 8.57660 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.028551 B = 0.007649 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.469883 B = 3659.759226 C = 4625.083439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.451 5.451 3 C -0.034 4.034 4 C -0.003 4.003 5 C -0.469 4.469 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.860 5.860 9 Si 0.988 3.012 10 H -0.267 1.267 11 H -0.266 1.266 12 H -0.270 1.270 13 C -0.071 4.071 14 O -0.171 6.171 15 C -0.100 4.100 16 C 0.586 3.414 17 O -0.519 6.519 18 O -0.491 6.491 19 C -0.065 4.065 20 C -0.060 4.060 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.090 0.910 24 H 0.204 0.796 25 H 0.284 0.716 26 H 0.435 0.565 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.263 -6.695 -0.045 7.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.138 5.138 3 C -0.163 4.163 4 C -0.009 4.009 5 C -0.502 4.502 6 H 0.077 0.923 7 C -0.185 4.185 8 N -0.492 5.492 9 Si 0.811 3.189 10 H -0.192 1.192 11 H -0.190 1.190 12 H -0.195 1.195 13 C -0.128 4.128 14 O -0.070 6.070 15 C -0.149 4.149 16 C 0.432 3.568 17 O -0.412 6.412 18 O -0.304 6.304 19 C -0.087 4.087 20 C -0.168 4.168 21 H 0.092 0.908 22 H 0.110 0.890 23 H 0.108 0.892 24 H 0.220 0.780 25 H 0.095 0.905 26 H 0.296 0.704 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -3.665 -6.304 -0.044 7.292 hybrid contribution 0.751 -0.077 0.013 0.755 sum -2.914 -6.381 -0.031 7.015 Atomic orbital electron populations 1.22087 0.75643 1.04856 1.03464 1.42874 1.06478 1.02095 1.62330 1.23360 0.87914 0.90998 1.13985 1.17914 0.94228 0.82233 1.06485 1.18942 0.92486 0.91612 1.47162 0.92319 1.26302 1.00041 0.98999 0.93147 1.69386 1.23041 1.14248 1.42520 0.85082 0.77735 0.77121 0.78990 1.19240 1.19004 1.19471 1.22095 0.88599 0.89660 1.12419 1.83860 1.34984 1.12326 1.75787 1.20648 0.88975 0.85497 1.19739 1.18447 0.81288 0.85141 0.71900 1.90947 1.56353 1.44833 1.49053 1.85113 1.23529 1.36710 1.85079 1.20654 0.96455 0.90270 1.01351 1.18819 0.90997 0.90092 1.16900 0.90807 0.88953 0.89162 0.78017 0.90523 0.70377 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 11.05 127.77 1.41 3.73 15 2 N -0.45 -19.33 3.14 -536.32 -1.68 -21.01 15 3 C -0.03 -1.73 10.31 84.52 0.87 -0.86 15 4 C 0.00 -0.15 6.10 -20.03 -0.12 -0.27 15 5 C -0.47 -26.76 9.43 23.36 0.22 -26.54 15 6 H 0.06 3.38 7.84 -2.91 -0.02 3.35 15 7 C 0.02 1.14 5.49 85.15 0.47 1.61 15 8 N -0.86 -43.77 10.34 21.79 0.23 -43.54 15 9 Si 0.99 40.18 29.56 68.60 2.03 42.21 15 10 H -0.27 -10.54 7.11 99.48 0.71 -9.83 15 11 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 12 H -0.27 -11.05 7.11 99.48 0.71 -10.35 15 13 C -0.07 -3.75 8.42 24.61 0.21 -3.54 15 14 O -0.17 -8.46 10.69 -11.39 -0.12 -8.58 15 15 C -0.10 -4.07 7.14 24.00 0.17 -3.89 15 16 C 0.59 19.54 8.27 69.93 0.58 20.12 15 17 O -0.52 -17.56 17.58 19.36 0.34 -17.22 15 18 O -0.49 -13.26 13.56 -56.88 -0.77 -14.03 15 19 C -0.07 -2.53 10.58 22.44 0.24 -2.29 15 20 C -0.06 -2.75 7.55 38.77 0.29 -2.46 15 21 H 0.07 1.88 8.14 -2.38 -0.02 1.87 15 22 H 0.09 2.37 8.13 -2.39 -0.02 2.35 15 23 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 24 H 0.20 10.18 5.70 -2.91 -0.02 10.17 15 25 H 0.28 13.08 8.30 -92.71 -0.77 12.31 15 26 H 0.43 6.00 8.98 -74.06 -0.67 5.33 15 27 H 0.18 5.62 8.06 -2.91 -0.02 5.59 15 Total: -1.00 -67.93 253.81 4.92 -63.01 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.57 Total: 13.57 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 4.34 Total: -14.41 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -1.46 Total: -64.55 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.55 Total: -39.83 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -67.93 4.92 -63.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260054202.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.401 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds