Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28051 * 124.77412 * 2 1 4 4 C 1.34561 * 118.05938 * 180.02562 * 3 2 1 5 5 C 1.41463 * 129.05700 * 180.02562 * 4 3 2 6 6 C 1.36366 * 119.03185 * 180.02562 * 5 4 3 7 7 C 1.39574 * 119.75533 * 0.02562 * 6 5 4 8 8 N 1.38782 * 119.66558 * 180.02562 * 7 6 5 9 9 C 1.36885 * 120.00143 * 354.26913 * 8 7 6 10 10 H 1.08000 * 119.99429 * 5.13845 * 9 8 7 11 11 C 1.38795 * 120.00393 * 185.13392 * 9 8 7 12 12 N 1.31574 * 119.99836 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47259 * 59.99869 * 13 11 9 15 15 H 1.48497 * 109.47515 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47114 * 300.00328 * 13 11 9 17 17 N 1.32108 * 120.67523 * 359.97438 * 7 6 5 18 18 C 1.33018 * 121.73553 * 0.03829 * 17 7 6 19 19 S 1.75810 * 124.77101 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47629 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47116 * 299.99953 * 1 2 3 22 22 H 1.08998 * 109.47480 * 59.99859 * 1 2 3 23 23 H 1.07998 * 120.48106 * 0.02562 * 5 4 3 24 24 H 1.08004 * 120.12049 * 179.97438 * 6 5 4 25 25 H 0.97006 * 120.00379 * 174.27342 * 8 7 6 26 26 H 0.97001 * 120.00101 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2373 1.0518 0.0000 4 6 3.5736 0.8945 -0.0005 5 6 4.5873 1.8812 -0.0002 6 6 5.8932 1.4884 -0.0014 7 6 6.2075 0.1286 -0.0035 8 7 7.5372 -0.2691 -0.0042 9 6 8.5309 0.6650 -0.1212 10 1 8.2851 1.7167 -0.1294 11 6 9.8542 0.2608 -0.2292 12 7 10.1536 -1.0204 -0.2196 13 14 11.2103 1.5356 -0.3881 14 1 11.2014 2.4192 0.8053 15 1 12.5242 0.8509 -0.4878 16 1 10.9833 2.3503 -1.6088 17 7 5.2523 -0.7840 -0.0038 18 6 3.9649 -0.4493 -0.0029 19 16 2.5096 -1.4442 -0.0006 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 4.3307 2.9303 0.0011 24 1 6.6813 2.2270 -0.0015 25 1 7.7624 -1.2090 0.0781 26 1 11.0785 -1.3030 -0.2947 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260070858.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = 60.679461 kcal Electronic energy + Delta-G solvation = -13416.554859 eV Core-core repulsion = 11007.393160 eV Total energy + Delta-G solvation = -2409.161698 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.75191 -37.38997 -35.05458 -32.22061 -31.55712 -30.31419 -26.99016 -25.02289 -23.56737 -21.86773 -20.32638 -18.17191 -17.60346 -16.88264 -15.69076 -15.23050 -14.56268 -14.44443 -13.95068 -13.29751 -13.14681 -12.60028 -12.50775 -12.10497 -12.03694 -11.76862 -11.37657 -11.35260 -10.75638 -10.66367 -10.25758 -9.66685 -9.25938 -8.93041 -8.30880 -7.82713 -7.12341 -6.99536 -4.12547 1.25607 1.82184 2.05879 2.44929 2.89790 2.96027 2.98578 3.21811 3.71291 4.40542 4.56084 4.65544 4.91810 5.36847 5.52282 5.71012 5.71074 5.85743 6.04570 6.12677 6.41674 6.69801 6.77008 6.96152 7.19176 7.44650 8.17654 8.39328 8.53567 8.87567 9.26988 10.14156 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.065689 B = 0.005650 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.151255 B = 4954.619787 C = 5361.125608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.037 3.963 3 N -0.423 5.423 4 C -0.109 4.109 5 C 0.012 3.988 6 C -0.215 4.215 7 C 0.365 3.635 8 N -0.495 5.495 9 C -0.303 4.303 10 H 0.113 0.887 11 C 0.029 3.971 12 N -0.863 5.863 13 Si 0.944 3.056 14 H -0.266 1.266 15 H -0.277 1.277 16 H -0.266 1.266 17 N -0.558 5.558 18 C 0.139 3.861 19 S 0.015 5.985 20 H 0.072 0.928 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.127 0.873 24 H 0.137 0.863 25 H 0.408 0.592 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.601 2.644 0.257 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.250 4.250 3 N -0.135 5.135 4 C -0.236 4.236 5 C -0.015 4.015 6 C -0.242 4.242 7 C 0.113 3.887 8 N -0.097 5.097 9 C -0.434 4.434 10 H 0.130 0.870 11 C -0.179 4.179 12 N -0.496 5.496 13 Si 0.768 3.232 14 H -0.191 1.191 15 H -0.202 1.202 16 H -0.191 1.191 17 N -0.285 5.285 18 C -0.119 4.119 19 S 0.259 5.741 20 H 0.091 0.909 21 H 0.096 0.904 22 H 0.095 0.905 23 H 0.145 0.855 24 H 0.155 0.845 25 H 0.245 0.755 26 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.187 1.264 0.228 8.288 hybrid contribution 1.370 1.458 -0.051 2.001 sum -6.818 2.722 0.177 7.343 Atomic orbital electron populations 1.20200 0.85905 1.02605 1.03236 1.26645 0.99403 0.88548 1.10355 1.65615 1.04565 1.31503 1.11836 1.19206 0.88951 0.92854 1.22625 1.20305 0.90101 0.97567 0.93485 1.20884 0.96315 0.95716 1.11254 1.18051 0.85142 0.88547 0.96960 1.41032 1.00400 1.10850 1.57414 1.19927 0.85415 0.90628 1.47418 0.86981 1.25552 0.99007 0.97541 0.95825 1.69698 1.21733 1.14687 1.43510 0.85694 0.78553 0.79307 0.79638 1.19115 1.20228 1.19108 1.66325 0.97490 1.36392 1.28294 1.23680 0.95748 0.92983 0.99532 1.84503 0.97612 1.11865 1.80119 0.90883 0.90435 0.90451 0.85533 0.84520 0.75545 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.68 10.49 36.00 0.38 -0.30 15 2 C 0.04 0.62 7.54 -13.86 -0.10 0.52 15 3 N -0.42 -8.40 10.55 -7.71 -0.08 -8.48 15 4 C -0.11 -2.35 6.97 -84.80 -0.59 -2.94 15 5 C 0.01 0.24 10.16 -39.03 -0.40 -0.15 15 6 C -0.22 -4.52 9.24 -39.76 -0.37 -4.89 15 7 C 0.37 8.60 7.61 -155.32 -1.18 7.42 15 8 N -0.50 -12.02 5.43 -11.17 -0.06 -12.08 15 9 C -0.30 -7.16 9.54 -15.09 -0.14 -7.31 15 10 H 0.11 2.44 5.66 -52.49 -0.30 2.15 15 11 C 0.03 0.68 5.50 -17.46 -0.10 0.59 15 12 N -0.86 -21.38 13.06 55.49 0.72 -20.66 15 13 Si 0.94 17.88 29.55 -169.99 -5.02 12.85 15 14 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 15 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 16 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 17 N -0.56 -13.44 10.42 -10.92 -0.11 -13.55 15 18 C 0.14 3.12 7.70 -16.39 -0.13 2.99 15 19 S 0.01 0.27 23.37 -107.50 -2.51 -2.24 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.13 2.13 8.06 -52.49 -0.42 1.71 15 24 H 0.14 2.62 5.94 -52.48 -0.31 2.30 15 25 H 0.41 10.29 8.03 -40.82 -0.33 9.96 15 26 H 0.29 6.60 8.31 -40.82 -0.34 6.26 15 LS Contribution 248.86 15.07 3.75 3.75 Total: -1.00 -27.32 248.86 -7.71 -35.03 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -1.76 Total: 9.45 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.63 Total: -4.08 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.47 Total: -54.77 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.02 Total: 12.85 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.51 Total: -2.24 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -27.32 -7.71 -35.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070858.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.710 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds