Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.28051 * 124.77412 * 2 1 4 4 C 1.34561 * 118.05938 * 180.02562 * 3 2 1 5 5 C 1.41463 * 129.05700 * 180.02562 * 4 3 2 6 6 C 1.36366 * 119.03185 * 180.02562 * 5 4 3 7 7 C 1.39574 * 119.75533 * 0.02562 * 6 5 4 8 8 N 1.38782 * 119.66558 * 180.02562 * 7 6 5 9 9 C 1.36885 * 120.00143 * 354.26913 * 8 7 6 10 10 H 1.08000 * 119.99429 * 5.13845 * 9 8 7 11 11 C 1.38795 * 120.00393 * 185.13392 * 9 8 7 12 12 N 1.31574 * 119.99836 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00208 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47259 * 59.99869 * 13 11 9 15 15 H 1.48497 * 109.47515 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47114 * 300.00328 * 13 11 9 17 17 N 1.32108 * 120.67523 * 359.97438 * 7 6 5 18 18 C 1.33018 * 121.73553 * 0.03829 * 17 7 6 19 19 S 1.75810 * 124.77101 * 180.02562 * 2 1 3 20 20 H 1.08998 * 109.47629 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47116 * 299.99953 * 1 2 3 22 22 H 1.08998 * 109.47480 * 59.99859 * 1 2 3 23 23 H 1.07998 * 120.48106 * 0.02562 * 5 4 3 24 24 H 1.08004 * 120.12049 * 179.97438 * 6 5 4 25 25 H 0.97006 * 120.00379 * 174.27342 * 8 7 6 26 26 H 0.97001 * 120.00101 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2373 1.0518 0.0000 4 6 3.5736 0.8945 -0.0005 5 6 4.5873 1.8812 -0.0002 6 6 5.8932 1.4884 -0.0014 7 6 6.2075 0.1286 -0.0035 8 7 7.5372 -0.2691 -0.0042 9 6 8.5309 0.6650 -0.1212 10 1 8.2851 1.7167 -0.1294 11 6 9.8542 0.2608 -0.2292 12 7 10.1536 -1.0204 -0.2196 13 14 11.2103 1.5356 -0.3881 14 1 11.2014 2.4192 0.8053 15 1 12.5242 0.8509 -0.4878 16 1 10.9833 2.3503 -1.6088 17 7 5.2523 -0.7840 -0.0038 18 6 3.9649 -0.4493 -0.0029 19 16 2.5096 -1.4442 -0.0006 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 4.3307 2.9303 0.0011 24 1 6.6813 2.2270 -0.0015 25 1 7.7624 -1.2090 0.0781 26 1 11.0785 -1.3030 -0.2947 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260070858.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = 43.177621 kcal Electronic energy + Delta-G solvation = -13417.313795 eV Core-core repulsion = 11007.393160 eV Total energy + Delta-G solvation = -2409.920635 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.40972 -39.00705 -36.69900 -33.86978 -33.22391 -31.62854 -28.55287 -26.67768 -25.21652 -23.45920 -21.87679 -19.83385 -19.20726 -18.50438 -17.33682 -16.82640 -16.12748 -16.03426 -15.54299 -14.72794 -14.52588 -14.17044 -13.96004 -13.51364 -13.40968 -13.10966 -12.92766 -12.80059 -12.41392 -12.15904 -11.84690 -11.26682 -10.80142 -10.59596 -9.97280 -9.38039 -8.82171 -8.67665 -5.92696 -0.29734 0.26091 0.37859 0.91704 1.40543 1.42439 1.54688 1.66053 2.16192 2.72816 2.90041 3.19557 3.20027 3.79546 4.17498 4.25748 4.44308 4.67323 4.84343 4.86119 5.02281 5.07625 5.27023 5.30730 5.54093 5.80038 6.44487 6.80037 6.85192 7.14841 7.53779 8.48770 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.065689 B = 0.005650 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.151255 B = 4954.619787 C = 5361.125608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.073 3.927 3 N -0.451 5.451 4 C -0.110 4.110 5 C 0.016 3.984 6 C -0.222 4.222 7 C 0.359 3.641 8 N -0.523 5.523 9 C -0.325 4.325 10 H 0.125 0.875 11 C -0.018 4.018 12 N -0.911 5.911 13 Si 1.012 2.988 14 H -0.258 1.258 15 H -0.280 1.280 16 H -0.260 1.260 17 N -0.586 5.586 18 C 0.091 3.909 19 S 0.041 5.959 20 H 0.100 0.900 21 H 0.099 0.901 22 H 0.099 0.901 23 H 0.162 0.838 24 H 0.153 0.847 25 H 0.395 0.605 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 4.136 0.227 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.215 4.215 3 N -0.163 5.163 4 C -0.235 4.235 5 C -0.011 4.011 6 C -0.248 4.248 7 C 0.108 3.892 8 N -0.127 5.127 9 C -0.455 4.455 10 H 0.142 0.858 11 C -0.221 4.221 12 N -0.547 5.547 13 Si 0.833 3.167 14 H -0.182 1.182 15 H -0.205 1.205 16 H -0.184 1.184 17 N -0.314 5.314 18 C -0.164 4.164 19 S 0.287 5.713 20 H 0.118 0.882 21 H 0.117 0.883 22 H 0.117 0.883 23 H 0.179 0.821 24 H 0.171 0.829 25 H 0.229 0.771 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.051 2.771 0.199 11.394 hybrid contribution 1.632 0.944 -0.027 1.886 sum -9.419 3.715 0.172 10.126 Atomic orbital electron populations 1.20569 0.81414 1.05135 1.05229 1.27944 1.01622 0.87326 1.04569 1.65780 1.03620 1.32193 1.14715 1.19658 0.90256 0.92903 1.20721 1.20701 0.89291 0.99153 0.91934 1.21072 0.97427 0.94923 1.11422 1.18498 0.85075 0.89744 0.95915 1.41038 1.00778 1.10223 1.60691 1.20291 0.85777 0.91107 1.48310 0.85763 1.26488 1.00923 0.99259 0.95380 1.69812 1.21902 1.16585 1.46405 0.84691 0.75340 0.76825 0.79879 1.18211 1.20524 1.18414 1.66353 0.98458 1.37338 1.29263 1.24305 0.96201 0.94945 1.00978 1.84430 0.95690 1.12037 1.79128 0.88162 0.88261 0.88302 0.82065 0.82932 0.77080 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.49 71.23 0.75 -0.37 15 2 C 0.07 2.20 7.54 88.66 0.67 2.87 15 3 N -0.45 -16.47 10.55 -178.25 -1.88 -18.35 15 4 C -0.11 -4.54 6.97 39.94 0.28 -4.26 15 5 C 0.02 0.60 10.16 22.63 0.23 0.83 15 6 C -0.22 -9.25 9.24 22.16 0.20 -9.05 15 7 C 0.36 17.35 7.61 133.33 1.01 18.36 15 8 N -0.52 -26.64 5.43 -189.27 -1.03 -27.67 15 9 C -0.32 -15.89 9.54 84.04 0.80 -15.09 15 10 H 0.12 5.49 5.66 -2.91 -0.02 5.48 15 11 C -0.02 -0.86 5.50 84.86 0.47 -0.39 15 12 N -0.91 -47.49 13.06 21.65 0.28 -47.21 15 13 Si 1.01 37.26 29.55 68.60 2.03 39.29 15 14 H -0.26 -9.01 7.11 99.48 0.71 -8.30 15 15 H -0.28 -10.28 7.11 99.48 0.71 -9.57 15 16 H -0.26 -9.16 7.11 99.48 0.71 -8.45 15 17 N -0.59 -28.84 10.42 -188.47 -1.96 -30.80 15 18 C 0.09 4.01 7.70 84.93 0.65 4.66 15 19 S 0.04 1.43 23.37 -56.49 -1.32 0.11 15 20 H 0.10 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.10 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.10 1.49 8.14 -2.39 -0.02 1.47 15 23 H 0.16 4.93 8.06 -2.91 -0.02 4.91 15 24 H 0.15 5.75 5.94 -2.91 -0.02 5.74 15 25 H 0.40 21.33 8.03 -92.70 -0.74 20.58 15 26 H 0.28 13.84 8.31 -92.71 -0.77 13.07 15 Total: -1.00 -61.05 248.86 1.67 -59.38 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.49 Total: 27.68 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 5.07 Total: -2.43 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.59 Total: -124.03 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -1.32 Total: 0.11 kcal Total: -61.05 1.67 -59.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260070858.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.555 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds