Wall clock time and date at job start Mon Mar 30 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36815 * 119.99872 * 2 1 4 4 H 1.08004 * 120.00208 * 145.34706 * 3 2 1 5 5 C 1.38812 * 120.00329 * 325.35129 * 3 2 1 6 6 N 1.31567 * 120.00421 * 157.41839 * 5 3 2 7 7 Si 1.86796 * 119.99759 * 337.41748 * 5 3 2 8 8 H 1.48500 * 109.47191 * 95.40227 * 7 5 3 9 9 H 1.48504 * 109.47431 * 215.40715 * 7 5 3 10 10 H 1.48504 * 109.47483 * 335.40238 * 7 5 3 11 11 C 1.38738 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.38799 * 120.69195 * 90.00278 * 11 2 1 13 13 C 1.38220 * 119.55095 * 180.02562 * 12 11 2 14 14 N 1.31590 * 120.98115 * 359.97438 * 13 12 11 15 15 C 1.33092 * 122.20205 * 0.02562 * 14 13 12 16 16 S 1.76316 * 131.04552 * 180.02562 * 15 14 13 17 17 C 1.75813 * 90.39893 * 180.02562 * 16 15 14 18 18 N 1.28076 * 110.41035 * 359.97438 * 17 16 15 19 19 C 1.34436 * 118.03934 * 359.71131 * 18 17 16 20 20 H 1.09000 * 109.47324 * 270.45394 * 1 2 3 21 21 H 1.09007 * 109.47366 * 150.45600 * 1 2 3 22 22 H 1.09006 * 109.47361 * 30.46009 * 1 2 3 23 23 H 0.97002 * 119.99869 * 180.02562 * 6 5 3 24 24 H 1.07998 * 120.22150 * 359.97438 * 12 11 2 25 25 H 1.08003 * 119.50883 * 179.97438 * 13 12 11 26 26 H 1.08006 * 124.79441 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 3.0854 1.2679 0.5318 5 6 1.6396 2.2805 -0.6835 6 7 2.0131 3.4967 -0.3484 7 14 0.4239 2.0279 -2.0790 8 1 -0.9607 2.1659 -1.5603 9 1 0.6615 3.0467 -3.1331 10 1 0.6044 0.6703 -2.6532 11 6 2.1587 -1.2015 0.0005 12 6 2.5130 -1.8155 -1.1928 13 6 3.2035 -3.0126 -1.1647 14 7 3.5308 -3.5791 -0.0230 15 6 3.2188 -3.0383 1.1523 16 16 3.5351 -3.5844 2.7987 17 6 2.7155 -2.1671 3.4394 18 7 2.2884 -1.4282 2.4844 19 6 2.5259 -1.8265 1.2226 20 1 -0.3634 0.0081 1.0276 21 1 -0.3634 -0.8941 -0.5068 22 1 -0.3634 0.8859 -0.5210 23 1 1.6568 4.2623 -0.8258 24 1 2.2501 -1.3615 -2.1367 25 1 3.4785 -3.4900 -2.0936 26 1 2.5905 -1.9498 4.4900 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260597556.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:17 Heat of formation + Delta-G solvation = 104.402836 kcal Electronic energy + Delta-G solvation = -14105.271879 eV Core-core repulsion = 11698.006169 eV Total energy + Delta-G solvation = -2407.265710 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.33373 -37.12977 -36.20376 -32.18940 -30.45981 -29.60740 -26.29044 -24.81638 -24.53082 -21.56747 -21.44446 -18.00779 -16.96009 -16.60587 -16.49984 -15.37227 -15.06900 -14.60127 -14.05802 -13.57893 -13.08669 -12.77842 -12.49954 -12.33164 -12.26784 -11.76023 -11.47219 -10.75573 -10.18937 -9.80737 -9.75303 -9.71424 -8.97512 -8.72482 -8.49290 -8.01886 -7.33205 -6.22604 -3.66060 0.65317 1.35554 1.46243 1.95365 2.75247 3.16154 3.31424 3.34891 4.08018 4.29348 4.32073 4.49292 4.84644 5.05956 5.14002 5.38267 5.69538 5.85154 6.03474 6.13915 6.25906 6.54597 6.71057 6.77135 7.75290 7.91483 8.02098 8.22087 8.71220 9.42585 9.74426 10.90819 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.008830 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.462041 B = 3170.282114 C = 3573.114014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.565 5.565 3 C -0.270 4.270 4 H 0.084 0.916 5 C 0.043 3.957 6 N -0.882 5.882 7 Si 0.888 3.112 8 H -0.282 1.282 9 H -0.297 1.297 10 H -0.268 1.268 11 C 0.318 3.682 12 C -0.196 4.196 13 C 0.142 3.858 14 N -0.478 5.478 15 C 0.047 3.953 16 S 0.037 5.963 17 C 0.080 3.920 18 N -0.418 5.418 19 C 0.004 3.996 20 H 0.030 0.970 21 H 0.036 0.964 22 H 0.053 0.947 23 H 0.269 0.731 24 H 0.144 0.856 25 H 0.164 0.836 26 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 -12.072 2.154 12.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.283 5.283 3 C -0.396 4.396 4 H 0.101 0.899 5 C -0.160 4.160 6 N -0.521 5.521 7 Si 0.718 3.282 8 H -0.210 1.210 9 H -0.225 1.225 10 H -0.193 1.193 11 C 0.211 3.789 12 C -0.222 4.222 13 C -0.025 4.025 14 N -0.190 5.190 15 C -0.201 4.201 16 S 0.285 5.715 17 C -0.227 4.227 18 N -0.127 5.127 19 C -0.121 4.121 20 H 0.048 0.952 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.162 0.838 25 H 0.181 0.819 26 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.337 -12.911 2.790 13.214 hybrid contribution -1.253 1.300 -1.434 2.305 sum -0.916 -11.612 1.356 11.726 Atomic orbital electron populations 1.21540 0.82669 0.99383 0.99601 1.41316 1.01390 1.00180 1.85420 1.18670 1.08234 0.84554 1.28167 0.89882 1.25371 0.98172 0.94900 0.97539 1.69828 1.44830 0.97697 1.39744 0.86814 0.80484 0.77928 0.83007 1.20989 1.22493 1.19280 1.17533 0.88085 0.85194 0.88039 1.22671 1.02830 0.96990 0.99700 1.22647 0.92686 0.92273 0.94897 1.67022 1.21731 1.34132 0.96150 1.24393 1.02055 0.95697 0.97999 1.84777 1.61316 1.28842 0.96611 1.29060 0.99006 0.92067 1.02564 1.66011 1.18405 1.29503 0.98791 1.21071 1.03323 0.95119 0.92567 0.95176 0.94565 0.92859 0.92078 0.83840 0.81939 0.77702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 9.54 59.84 0.57 3.01 15 2 N -0.56 -13.75 2.57 -119.82 -0.31 -14.06 15 3 C -0.27 -7.55 9.92 -15.12 -0.15 -7.70 15 4 H 0.08 2.58 8.06 -52.48 -0.42 2.16 15 5 C 0.04 1.21 5.32 -17.45 -0.09 1.11 15 6 N -0.88 -26.12 13.96 55.49 0.77 -25.34 15 7 Si 0.89 21.14 24.92 -169.99 -4.24 16.90 15 8 H -0.28 -6.51 6.67 56.52 0.38 -6.13 15 9 H -0.30 -7.14 7.11 56.52 0.40 -6.74 15 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 11 C 0.32 6.98 5.12 -83.05 -0.43 6.55 15 12 C -0.20 -3.64 10.01 -39.38 -0.39 -4.03 15 13 C 0.14 2.29 11.17 -17.66 -0.20 2.09 15 14 N -0.48 -8.66 10.37 -11.83 -0.12 -8.78 15 15 C 0.05 0.89 7.70 -16.44 -0.13 0.77 15 16 S 0.04 0.55 23.40 -107.50 -2.52 -1.97 15 17 C 0.08 1.21 12.41 51.20 0.64 1.85 15 18 N -0.42 -8.41 10.55 -11.42 -0.12 -8.53 15 19 C 0.00 0.09 6.92 -84.68 -0.59 -0.50 15 20 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.04 0.69 8.04 -51.93 -0.42 0.27 15 22 H 0.05 1.22 2.87 -51.93 -0.15 1.07 15 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 24 H 0.14 2.51 8.06 -52.49 -0.42 2.09 15 25 H 0.16 1.90 8.06 -52.48 -0.42 1.48 15 26 H 0.21 2.11 8.06 -52.48 -0.42 1.69 15 LS Contribution 244.35 15.07 3.68 3.68 Total: -1.00 -31.96 244.35 -5.45 -37.41 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: -1.84 Total: -2.47 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.77 Total: 3.15 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.22 Total: -56.71 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.24 Total: 16.90 kcal Atomic # 16 Polarization: 0.55 SS G_CDS: -2.52 Total: -1.97 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.96 -5.45 -37.41 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597556.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.816 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds