Wall clock time and date at job start Mon Mar 30 2020 03:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36815 * 119.99872 * 2 1 4 4 H 1.08004 * 120.00208 * 145.34706 * 3 2 1 5 5 C 1.38812 * 120.00329 * 325.35129 * 3 2 1 6 6 N 1.31567 * 120.00421 * 157.41839 * 5 3 2 7 7 Si 1.86796 * 119.99759 * 337.41748 * 5 3 2 8 8 H 1.48500 * 109.47191 * 95.40227 * 7 5 3 9 9 H 1.48504 * 109.47431 * 215.40715 * 7 5 3 10 10 H 1.48504 * 109.47483 * 335.40238 * 7 5 3 11 11 C 1.38738 * 120.00122 * 179.97438 * 2 1 3 12 12 C 1.38799 * 120.69195 * 90.00278 * 11 2 1 13 13 C 1.38220 * 119.55095 * 180.02562 * 12 11 2 14 14 N 1.31590 * 120.98115 * 359.97438 * 13 12 11 15 15 C 1.33092 * 122.20205 * 0.02562 * 14 13 12 16 16 S 1.76316 * 131.04552 * 180.02562 * 15 14 13 17 17 C 1.75813 * 90.39893 * 180.02562 * 16 15 14 18 18 N 1.28076 * 110.41035 * 359.97438 * 17 16 15 19 19 C 1.34436 * 118.03934 * 359.71131 * 18 17 16 20 20 H 1.09000 * 109.47324 * 270.45394 * 1 2 3 21 21 H 1.09007 * 109.47366 * 150.45600 * 1 2 3 22 22 H 1.09006 * 109.47361 * 30.46009 * 1 2 3 23 23 H 0.97002 * 119.99869 * 180.02562 * 6 5 3 24 24 H 1.07998 * 120.22150 * 359.97438 * 12 11 2 25 25 H 1.08003 * 119.50883 * 179.97438 * 13 12 11 26 26 H 1.08006 * 124.79441 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1849 0.0000 4 1 3.0854 1.2679 0.5318 5 6 1.6396 2.2805 -0.6835 6 7 2.0131 3.4967 -0.3484 7 14 0.4239 2.0279 -2.0790 8 1 -0.9607 2.1659 -1.5603 9 1 0.6615 3.0467 -3.1331 10 1 0.6044 0.6703 -2.6532 11 6 2.1587 -1.2015 0.0005 12 6 2.5130 -1.8155 -1.1928 13 6 3.2035 -3.0126 -1.1647 14 7 3.5308 -3.5791 -0.0230 15 6 3.2188 -3.0383 1.1523 16 16 3.5351 -3.5844 2.7987 17 6 2.7155 -2.1671 3.4394 18 7 2.2884 -1.4282 2.4844 19 6 2.5259 -1.8265 1.2226 20 1 -0.3634 0.0081 1.0276 21 1 -0.3634 -0.8941 -0.5068 22 1 -0.3634 0.8859 -0.5210 23 1 1.6568 4.2623 -0.8258 24 1 2.2501 -1.3615 -2.1367 25 1 3.4785 -3.4900 -2.0936 26 1 2.5905 -1.9498 4.4900 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260597556.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:17 Heat of formation + Delta-G solvation = 80.799937 kcal Electronic energy + Delta-G solvation = -14106.295377 eV Core-core repulsion = 11698.006169 eV Total energy + Delta-G solvation = -2408.289209 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.047 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.75472 -38.56135 -37.89102 -34.15909 -32.03550 -31.03039 -28.13894 -26.28472 -26.14341 -23.18032 -22.81968 -19.66039 -18.72139 -18.09027 -17.97783 -17.14778 -16.49349 -16.06066 -15.56217 -14.90560 -14.79177 -14.60615 -14.45273 -13.72159 -13.70337 -13.36370 -13.01984 -12.61057 -12.18248 -11.65179 -11.15847 -11.11342 -10.80508 -10.25552 -9.86677 -9.36285 -9.22947 -8.32269 -5.78333 -0.67342 -0.02171 0.08251 0.64957 1.28589 1.39367 1.42405 1.51665 2.32767 2.65894 2.79618 3.03150 3.10092 3.55071 3.75179 4.12874 4.26845 4.35990 4.45625 4.58006 4.80000 4.85157 5.22062 5.40263 5.75557 6.04509 6.58113 6.64652 6.80269 7.42791 7.76986 8.86340 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.036763 B = 0.008830 C = 0.007834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.462041 B = 3170.282114 C = 3573.114014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.575 5.575 3 C -0.271 4.271 4 H 0.028 0.972 5 C -0.011 4.011 6 N -0.938 5.938 7 Si 0.959 3.041 8 H -0.269 1.269 9 H -0.301 1.301 10 H -0.247 1.247 11 C 0.274 3.726 12 C -0.191 4.191 13 C 0.155 3.845 14 N -0.479 5.479 15 C 0.016 3.984 16 S 0.106 5.894 17 C 0.101 3.899 18 N -0.479 5.479 19 C -0.015 4.015 20 H 0.024 0.976 21 H 0.066 0.934 22 H 0.045 0.955 23 H 0.270 0.730 24 H 0.155 0.845 25 H 0.214 0.786 26 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -14.896 1.681 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.295 5.295 3 C -0.398 4.398 4 H 0.046 0.954 5 C -0.209 4.209 6 N -0.580 5.580 7 Si 0.785 3.215 8 H -0.196 1.196 9 H -0.229 1.229 10 H -0.170 1.170 11 C 0.169 3.831 12 C -0.216 4.216 13 C -0.013 4.013 14 N -0.192 5.192 15 C -0.232 4.232 16 S 0.354 5.646 17 C -0.205 4.205 18 N -0.190 5.190 19 C -0.139 4.139 20 H 0.042 0.958 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.172 0.828 25 H 0.230 0.770 26 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -0.063 -15.810 2.343 15.983 hybrid contribution -0.994 1.949 -1.045 2.425 sum -1.058 -13.861 1.298 13.962 Atomic orbital electron populations 1.21538 0.81505 1.00351 0.99603 1.41170 1.02029 0.99963 1.86322 1.18272 1.06658 0.87070 1.27839 0.95398 1.26039 1.00919 0.94094 0.99820 1.69969 1.47870 0.98731 1.41444 0.85681 0.78272 0.78546 0.78969 1.19627 1.22914 1.17008 1.17979 0.89543 0.85850 0.89726 1.22834 1.02137 0.97727 0.98881 1.23381 0.90853 0.90968 0.96139 1.67192 1.21386 1.34098 0.96479 1.24898 1.02452 0.95781 1.00052 1.84529 1.59755 1.27164 0.93114 1.29940 0.95758 0.91116 1.03709 1.66052 1.21628 1.31903 0.99375 1.21184 1.04002 0.95844 0.92894 0.95762 0.91497 0.93721 0.92058 0.82780 0.76960 0.73278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.88 9.54 127.77 1.22 6.10 15 2 N -0.58 -28.39 2.57 -533.01 -1.37 -29.76 15 3 C -0.27 -15.84 9.92 84.05 0.83 -15.00 15 4 H 0.03 1.89 8.06 -2.91 -0.02 1.86 15 5 C -0.01 -0.61 5.32 84.87 0.45 -0.16 15 6 N -0.94 -58.13 13.96 21.65 0.30 -57.83 15 7 Si 0.96 44.06 24.92 68.60 1.71 45.77 15 8 H -0.27 -11.71 6.67 99.48 0.66 -11.05 15 9 H -0.30 -13.87 7.11 99.48 0.71 -13.17 15 10 H -0.25 -10.34 7.11 99.48 0.71 -9.63 15 11 C 0.27 12.00 5.12 39.14 0.20 12.20 15 12 C -0.19 -6.75 10.01 22.40 0.22 -6.52 15 13 C 0.15 4.51 11.17 84.72 0.95 5.45 15 14 N -0.48 -16.10 10.37 -191.35 -1.98 -18.08 15 15 C 0.02 0.58 7.70 84.87 0.65 1.23 15 16 S 0.11 2.83 23.40 -56.49 -1.32 1.51 15 17 C 0.10 2.82 12.41 130.79 1.62 4.44 15 18 N -0.48 -19.14 10.55 -189.97 -2.00 -21.15 15 19 C -0.01 -0.62 6.92 40.07 0.28 -0.35 15 20 H 0.02 1.05 8.14 -2.39 -0.02 1.03 15 21 H 0.07 2.44 8.04 -2.38 -0.02 2.42 15 22 H 0.04 1.99 2.87 -2.38 -0.01 1.98 15 23 H 0.27 15.59 8.31 -92.71 -0.77 14.82 15 24 H 0.15 5.03 8.06 -2.91 -0.02 5.01 15 25 H 0.21 3.92 8.06 -2.91 -0.02 3.89 15 26 H 0.25 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -73.69 244.35 2.93 -70.76 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: 1.17 Total: 1.39 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.43 Total: 7.39 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -5.06 Total: -126.82 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.71 Total: 45.77 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -1.32 Total: 1.51 kcal Total: -73.69 2.93 -70.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260597556.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.564 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds