Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.37757 * 120.56815 * 2 1 4 4 C 1.40981 * 127.77686 * 0.03923 * 3 2 1 5 5 C 1.35701 * 121.20473 * 179.97438 * 4 3 2 6 6 C 1.40974 * 120.70726 * 359.97438 * 5 4 3 7 7 C 1.41210 * 120.52776 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99822 * 24.05964 * 7 6 5 9 9 C 1.39870 * 120.00088 * 204.06649 * 7 6 5 10 10 N 1.30888 * 120.00086 * 17.77626 * 9 7 6 11 11 Si 1.86805 * 119.99959 * 197.77431 * 9 7 6 12 12 H 1.48506 * 109.47000 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.46910 * 120.00129 * 11 9 7 14 14 H 1.48505 * 109.46839 * 240.00097 * 11 9 7 15 15 C 1.40752 * 118.95001 * 0.02562 * 6 5 4 16 16 C 1.37610 * 119.57682 * 0.25095 * 15 6 5 17 17 S 1.76925 * 132.29763 * 179.74702 * 16 15 6 18 18 C 1.33619 * 120.56023 * 180.95497 * 2 1 3 19 19 O 1.21696 * 126.93320 * 359.25556 * 18 2 1 20 20 H 1.09003 * 109.47227 * 89.99805 * 1 2 3 21 21 H 1.09000 * 109.47608 * 210.00003 * 1 2 3 22 22 H 1.09006 * 109.47187 * 330.00152 * 1 2 3 23 23 H 1.08001 * 119.40241 * 359.95667 * 4 3 2 24 24 H 1.07995 * 119.64995 * 180.02562 * 5 4 3 25 25 H 0.97002 * 119.99943 * 180.02562 * 10 9 7 26 26 H 1.08000 * 120.21523 * 179.97438 * 15 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1656 1.1861 0.0000 4 6 1.6454 2.4964 0.0008 5 6 2.4647 3.5782 0.0012 6 6 3.8656 3.4202 0.0014 7 6 4.7146 4.5486 0.0024 8 1 4.3567 5.4933 0.3843 9 6 6.0190 4.4427 -0.4914 10 7 6.3484 3.4352 -1.2592 11 14 7.2909 5.7394 -0.0550 12 1 6.6705 6.7667 0.8197 13 1 8.4248 5.0997 0.6593 14 1 7.7883 6.3828 -1.2976 15 6 4.4046 2.1200 0.0006 16 6 3.5592 1.0343 -0.0056 17 16 3.8602 -0.7092 -0.0142 18 6 2.1444 -1.1504 -0.0192 19 8 1.6786 -2.2747 -0.0253 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3634 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 0.5752 2.6420 0.0007 24 1 2.0391 4.5707 0.0022 25 1 7.2531 3.3616 -1.6013 26 1 5.4748 1.9753 0.0004 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076464.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = -6.769583 kcal Electronic energy + Delta-G solvation = -13810.464012 eV Core-core repulsion = 11366.084752 eV Total energy + Delta-G solvation = -2444.379259 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.89911 -37.69964 -35.63353 -33.48506 -30.44613 -29.46414 -27.65514 -25.39526 -22.54993 -21.43566 -20.27804 -18.00559 -17.66552 -16.32176 -15.65696 -15.41076 -15.15896 -14.41656 -13.51188 -13.15639 -13.06202 -12.95889 -12.30402 -12.13482 -11.90671 -11.56228 -11.30000 -11.10350 -10.89298 -10.20284 -9.84355 -9.64962 -9.37508 -9.25370 -9.06007 -7.35205 -7.19099 -6.97790 -4.57575 1.72765 2.08544 2.46109 2.62028 2.81062 2.95915 3.00496 3.07858 3.61312 3.74394 4.26631 5.26397 5.27404 5.54363 5.55615 5.75753 5.95370 6.32953 6.57291 6.73274 6.93317 6.94984 7.08702 7.38006 7.57914 7.70484 7.83238 8.08626 8.23064 8.54375 8.56581 9.89495 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.045047 B = 0.007473 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.422179 B = 3745.967621 C = 4286.267241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.516 5.516 3 C -0.033 4.033 4 C -0.075 4.075 5 C -0.187 4.187 6 C 0.112 3.888 7 C -0.442 4.442 8 H 0.087 0.913 9 C 0.073 3.927 10 N -0.779 5.779 11 Si 0.913 3.087 12 H -0.258 1.258 13 H -0.269 1.269 14 H -0.272 1.272 15 C -0.114 4.114 16 C -0.086 4.086 17 S -0.078 6.078 18 C 0.510 3.490 19 O -0.509 6.509 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.099 0.901 24 H 0.108 0.892 25 H 0.287 0.713 26 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 0.805 1.628 4.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.239 5.239 3 C -0.132 4.132 4 C -0.096 4.096 5 C -0.208 4.208 6 C 0.106 3.894 7 C -0.471 4.471 8 H 0.105 0.895 9 C -0.148 4.148 10 N -0.403 5.403 11 Si 0.737 3.263 12 H -0.181 1.181 13 H -0.194 1.194 14 H -0.197 1.197 15 C -0.139 4.139 16 C -0.201 4.201 17 S 0.164 5.836 18 C 0.191 3.809 19 O -0.392 6.392 20 H 0.080 0.920 21 H 0.096 0.904 22 H 0.098 0.902 23 H 0.117 0.883 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.713 -0.775 1.480 3.186 hybrid contribution -0.543 1.261 -0.010 1.373 sum -3.256 0.485 1.470 3.606 Atomic orbital electron populations 1.21814 0.78952 1.03547 1.02495 1.44981 1.07681 1.04808 1.66382 1.17370 0.89832 0.85697 1.20300 1.19682 0.97899 0.88883 1.03184 1.20544 0.93651 0.96504 1.10094 1.17517 0.91124 0.92120 0.88609 1.19624 0.95868 0.97011 1.34590 0.89467 1.26018 0.99594 0.96718 0.92425 1.69819 1.21007 1.28370 1.21125 0.86165 0.79938 0.80734 0.79476 1.18121 1.19413 1.19738 1.20464 0.98753 0.89141 1.05566 1.21325 0.94140 0.93754 1.10879 1.85431 1.08630 1.03807 1.85752 1.21685 0.91212 0.85778 0.82217 1.90809 1.71870 1.19985 1.56506 0.91967 0.90437 0.90243 0.88254 0.87355 0.90215 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.30 59.85 0.62 1.80 15 2 N -0.52 -10.25 3.02 -124.14 -0.37 -10.63 15 3 C -0.03 -0.71 6.60 -83.43 -0.55 -1.26 15 4 C -0.07 -1.49 9.39 -39.45 -0.37 -1.86 15 5 C -0.19 -3.99 9.68 -39.45 -0.38 -4.37 15 6 C 0.11 2.67 5.58 -106.78 -0.60 2.08 15 7 C -0.44 -10.38 9.06 -37.84 -0.34 -10.72 15 8 H 0.09 1.93 7.91 -52.48 -0.41 1.51 15 9 C 0.07 1.64 5.15 -17.34 -0.09 1.55 15 10 N -0.78 -18.47 10.95 55.54 0.61 -17.86 15 11 Si 0.91 16.86 29.59 -169.99 -5.03 11.83 15 12 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 13 H -0.27 -4.96 7.11 56.52 0.40 -4.55 15 14 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 15 C -0.11 -2.77 8.72 -38.86 -0.34 -3.11 15 16 C -0.09 -1.99 6.58 -39.08 -0.26 -2.24 15 17 S -0.08 -1.66 23.16 -107.50 -2.49 -4.15 15 18 C 0.51 10.91 8.44 53.54 0.45 11.36 15 19 O -0.51 -11.45 17.45 5.19 0.09 -11.36 15 20 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 21 H 0.08 1.11 7.75 -51.93 -0.40 0.71 15 22 H 0.08 1.03 6.87 -51.93 -0.36 0.68 15 23 H 0.10 1.64 7.02 -52.49 -0.37 1.28 15 24 H 0.11 2.07 8.06 -52.49 -0.42 1.65 15 25 H 0.29 6.16 8.30 -40.82 -0.34 5.82 15 26 H 0.13 3.34 6.16 -52.49 -0.32 3.02 15 LS Contribution 245.21 15.07 3.70 3.70 Total: -1.00 -26.38 245.21 -7.21 -33.58 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -1.85 Total: 1.67 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.86 Total: -6.77 kcal Atomic # 7 Polarization: -28.72 SS G_CDS: 0.23 Total: -28.49 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.49 Total: -4.15 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.38 -7.21 -33.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076464.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.814 kcal (2) G-P(sol) polarization free energy of solvation -26.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds