Wall clock time and date at job start Mon Mar 30 2020 03:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00551 * 2 1 4 4 H 1.48499 * 109.47247 * 269.99950 * 3 2 1 5 5 H 1.48498 * 109.47245 * 29.99878 * 3 2 1 6 6 H 1.48502 * 109.47514 * 149.99622 * 3 2 1 7 7 C 1.37877 * 119.99491 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00078 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40264 * 66.46088 * 9 7 2 11 11 O 1.42096 * 106.40039 * 293.53859 * 9 7 2 12 12 N 1.65601 * 107.21780 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00387 * 64.99953 * 12 9 7 14 14 H 1.09001 * 110.53798 * 337.61129 * 13 12 9 15 15 C 1.54956 * 110.53086 * 100.24007 * 13 12 9 16 16 C 1.54894 * 102.77842 * 156.56912 * 15 13 12 17 17 C 1.54264 * 104.19648 * 322.08466 * 16 15 13 18 18 C 1.53880 * 106.59697 * 23.60802 * 17 16 15 19 19 H 1.08999 * 110.03704 * 240.66737 * 18 17 16 20 20 O 1.42905 * 110.03083 * 119.28192 * 18 17 16 21 21 H 0.97001 * 119.99404 * 0.02562 * 1 2 3 22 22 H 0.97009 * 119.99922 * 244.99997 * 12 9 7 23 23 H 1.09001 * 110.72153 * 38.25849 * 15 13 12 24 24 H 1.09000 * 110.92718 * 274.97971 * 15 13 12 25 25 H 1.09000 * 110.49072 * 203.40802 * 16 15 13 26 26 H 1.09001 * 110.48432 * 80.76437 * 16 15 13 27 27 H 1.08992 * 110.03607 * 264.32820 * 17 16 15 28 28 H 1.09001 * 110.03315 * 142.88860 * 17 16 15 29 29 H 0.96696 * 114.00036 * 62.09390 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1233 -2.7200 0.0005 10 8 0.4516 -2.7955 -1.2494 11 8 0.4507 -2.7949 1.2500 12 7 2.2479 -3.9355 0.0019 13 6 3.1381 -4.1086 1.1525 14 1 3.2202 -3.1789 1.7157 15 6 2.6297 -5.2525 2.0658 16 6 3.9142 -5.6921 2.8116 17 6 5.0241 -5.5916 1.7449 18 6 4.5309 -4.5849 0.6908 19 1 4.4559 -5.0698 -0.2825 20 8 5.4280 -3.4750 0.6165 21 1 -0.4849 0.8401 -0.0004 22 1 2.3173 -4.5330 -0.7591 23 1 2.2293 -6.0727 1.4699 24 1 1.8813 -4.8863 2.7684 25 1 3.8174 -6.7183 3.1658 26 1 4.1220 -5.0185 3.6430 27 1 5.1877 -6.5653 1.2833 28 1 5.9477 -5.2335 2.1997 29 1 6.3244 -3.7115 0.3415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306633281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:00 Heat of formation + Delta-G solvation = -155.939376 kcal Electronic energy + Delta-G solvation = -15495.595618 eV Core-core repulsion = 12737.438951 eV Total energy + Delta-G solvation = -2758.156667 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.75220 -35.22494 -34.94825 -33.87702 -33.07706 -32.66827 -27.56973 -26.40286 -26.03037 -20.67107 -20.30260 -18.99749 -17.66271 -16.66076 -16.19618 -15.91225 -15.17357 -14.69791 -13.97064 -13.87305 -13.25359 -12.96469 -12.46767 -12.39106 -12.00626 -11.78151 -11.16514 -11.13172 -11.00651 -10.62138 -10.53966 -10.48715 -10.22421 -10.12289 -10.06243 -9.78893 -9.16887 -8.95086 -8.44804 -6.62269 -5.22304 2.41300 3.13223 3.19326 3.28131 4.13398 4.36161 4.58822 4.72198 4.73627 5.03123 5.09685 5.47211 5.61300 5.64483 5.73203 5.78353 5.90232 5.95832 6.08880 6.19231 6.40085 6.46081 6.62564 6.95965 7.41851 7.84909 7.95155 8.11292 8.98524 10.31899 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.009731 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.065885 B = 2876.696717 C = 3365.766473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.133 3.867 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.262 1.262 7 C -1.018 5.018 8 H 0.106 0.894 9 S 2.715 3.285 10 O -1.009 7.009 11 O -1.005 7.005 12 N -1.127 6.127 13 C 0.165 3.835 14 H 0.106 0.894 15 C -0.139 4.139 16 C -0.121 4.121 17 C -0.156 4.156 18 C 0.092 3.908 19 H 0.061 0.939 20 O -0.556 6.556 21 H 0.290 0.710 22 H 0.400 0.600 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.341 -9.012 2.796 13.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.085 4.085 3 Si 0.744 3.256 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.186 1.186 7 C -1.151 5.151 8 H 0.124 0.876 9 S 2.814 3.186 10 O -1.000 7.000 11 O -0.995 6.995 12 N -0.879 5.879 13 C 0.056 3.944 14 H 0.124 0.876 15 C -0.179 4.179 16 C -0.160 4.160 17 C -0.194 4.194 18 C 0.031 3.969 19 H 0.079 0.921 20 O -0.360 6.360 21 H 0.100 0.900 22 H 0.230 0.770 23 H 0.090 0.910 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 8.650 -8.613 3.147 12.606 hybrid contribution 1.581 0.581 -0.585 1.784 sum 10.231 -8.032 2.561 13.257 Atomic orbital electron populations 1.69907 1.06783 1.30586 1.40554 1.24746 0.94423 1.00821 0.88498 0.86169 0.80263 0.80042 0.79106 1.19286 1.20092 1.18568 1.30595 1.06414 1.11714 1.66403 0.87594 1.00418 0.72047 0.73276 0.72818 1.93367 1.73232 1.87684 1.45683 1.93358 1.72824 1.87498 1.45848 1.56068 1.55106 1.50857 1.25914 1.21326 0.86476 0.99863 0.86713 0.87605 1.22993 0.97607 0.98345 0.98935 1.22274 0.94642 1.01241 0.97798 1.22877 0.99470 0.99475 0.97595 1.22859 0.90321 0.86500 0.97192 0.92065 1.86675 1.23588 1.34336 1.91441 0.90020 0.76962 0.91019 0.89740 0.91601 0.91138 0.91502 0.90914 0.78329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.52 13.19 55.43 0.73 -24.79 15 2 C 0.13 3.81 5.46 -17.82 -0.10 3.71 15 3 Si 0.92 21.31 29.54 -169.99 -5.02 16.29 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.26 -5.90 7.11 56.52 0.40 -5.50 15 7 C -1.02 -28.97 9.68 30.60 0.30 -28.68 15 8 H 0.11 2.85 7.81 -52.49 -0.41 2.44 15 9 S 2.71 73.43 4.94 -107.50 -0.53 72.90 15 10 O -1.01 -30.16 18.02 -57.17 -1.03 -31.19 15 11 O -1.01 -29.56 17.78 -57.17 -1.02 -30.58 15 12 N -1.13 -22.88 5.57 -3.45 -0.02 -22.90 15 13 C 0.17 2.96 3.14 -66.24 -0.21 2.75 15 14 H 0.11 2.15 7.91 -51.93 -0.41 1.74 15 15 C -0.14 -2.12 6.58 -24.70 -0.16 -2.28 15 16 C -0.12 -1.44 6.83 -25.07 -0.17 -1.61 15 17 C -0.16 -1.72 6.61 -25.61 -0.17 -1.89 15 18 C 0.09 1.30 3.99 -25.61 -0.10 1.20 15 19 H 0.06 0.79 7.82 -51.93 -0.41 0.38 15 20 O -0.56 -8.27 13.22 -35.23 -0.47 -8.73 15 21 H 0.29 7.83 8.31 -40.82 -0.34 7.49 15 22 H 0.40 6.94 8.65 -34.47 -0.30 6.64 15 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.08 1.40 8.14 -51.93 -0.42 0.97 15 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 15 28 H 0.07 0.73 7.95 -51.93 -0.41 0.31 15 29 H 0.37 3.52 9.11 45.56 0.41 3.94 15 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -36.52 264.14 -6.76 -43.27 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -2.77 Total: 8.54 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -0.61 Total: -26.79 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.71 Total: -47.69 kcal Atomic # 8 Polarization: -67.99 SS G_CDS: -2.51 Total: -70.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 73.43 SS G_CDS: -0.53 Total: 72.90 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -36.52 -6.76 -43.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306633281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.666 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds