Wall clock time and date at job start Mon Mar 30 2020 03:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86791 * 120.00551 * 2 1 4 4 H 1.48499 * 109.47247 * 269.99950 * 3 2 1 5 5 H 1.48498 * 109.47245 * 29.99878 * 3 2 1 6 6 H 1.48502 * 109.47514 * 149.99622 * 3 2 1 7 7 C 1.37877 * 119.99491 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00118 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00078 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40264 * 66.46088 * 9 7 2 11 11 O 1.42096 * 106.40039 * 293.53859 * 9 7 2 12 12 N 1.65601 * 107.21780 * 180.02562 * 9 7 2 13 13 C 1.46499 * 120.00387 * 64.99953 * 12 9 7 14 14 H 1.09001 * 110.53798 * 337.61129 * 13 12 9 15 15 C 1.54956 * 110.53086 * 100.24007 * 13 12 9 16 16 C 1.54894 * 102.77842 * 156.56912 * 15 13 12 17 17 C 1.54264 * 104.19648 * 322.08466 * 16 15 13 18 18 C 1.53880 * 106.59697 * 23.60802 * 17 16 15 19 19 H 1.08999 * 110.03704 * 240.66737 * 18 17 16 20 20 O 1.42905 * 110.03083 * 119.28192 * 18 17 16 21 21 H 0.97001 * 119.99404 * 0.02562 * 1 2 3 22 22 H 0.97009 * 119.99922 * 244.99997 * 12 9 7 23 23 H 1.09001 * 110.72153 * 38.25849 * 15 13 12 24 24 H 1.09000 * 110.92718 * 274.97971 * 15 13 12 25 25 H 1.09000 * 110.49072 * 203.40802 * 16 15 13 26 26 H 1.09001 * 110.48432 * 80.76437 * 16 15 13 27 27 H 1.08992 * 110.03607 * 264.32820 * 17 16 15 28 28 H 1.09001 * 110.03315 * 142.88860 * 17 16 15 29 29 H 0.96696 * 114.00036 * 62.09390 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 16 1.1233 -2.7200 0.0005 10 8 0.4516 -2.7955 -1.2494 11 8 0.4507 -2.7949 1.2500 12 7 2.2479 -3.9355 0.0019 13 6 3.1381 -4.1086 1.1525 14 1 3.2202 -3.1789 1.7157 15 6 2.6297 -5.2525 2.0658 16 6 3.9142 -5.6921 2.8116 17 6 5.0241 -5.5916 1.7449 18 6 4.5309 -4.5849 0.6908 19 1 4.4559 -5.0698 -0.2825 20 8 5.4280 -3.4750 0.6165 21 1 -0.4849 0.8401 -0.0004 22 1 2.3173 -4.5330 -0.7591 23 1 2.2293 -6.0727 1.4699 24 1 1.8813 -4.8863 2.7684 25 1 3.8174 -6.7183 3.1658 26 1 4.1220 -5.0185 3.6430 27 1 5.1877 -6.5653 1.2833 28 1 5.9477 -5.2335 2.1997 29 1 6.3244 -3.7115 0.3415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306633281.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:00 Heat of formation + Delta-G solvation = -188.763752 kcal Electronic energy + Delta-G solvation = -15497.018989 eV Core-core repulsion = 12737.438951 eV Total energy + Delta-G solvation = -2759.580038 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91459 -37.39124 -36.25752 -36.13455 -35.19926 -34.14101 -28.65039 -28.26071 -27.66883 -21.84179 -21.48300 -21.03308 -19.51168 -18.40747 -17.73162 -17.47002 -16.88706 -16.13154 -15.92372 -15.67367 -14.79751 -14.14374 -14.02266 -13.68365 -13.63706 -13.26399 -13.06751 -13.01770 -12.52940 -12.46110 -12.32059 -12.31239 -11.99740 -11.58126 -11.38609 -11.25244 -11.00356 -10.81001 -10.17712 -8.76015 -7.47737 0.35843 1.32225 1.33064 1.49886 2.20722 2.57108 2.94149 3.31155 3.57995 3.73752 3.89002 4.07924 4.37021 4.42790 4.47156 4.54889 4.70204 4.78545 4.85177 5.06334 5.13813 5.24929 5.27434 5.40867 5.50197 5.91892 6.39092 6.78620 7.02571 8.20626 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.030458 B = 0.009731 C = 0.008317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.065885 B = 2876.696717 C = 3365.766473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.253 1.253 5 H -0.259 1.259 6 H -0.252 1.252 7 C -1.040 5.040 8 H 0.114 0.886 9 S 2.722 3.278 10 O -1.046 7.046 11 O -1.039 7.039 12 N -1.112 6.112 13 C 0.144 3.856 14 H 0.073 0.927 15 C -0.142 4.142 16 C -0.116 4.116 17 C -0.144 4.144 18 C 0.095 3.905 19 H 0.077 0.923 20 O -0.583 6.583 21 H 0.299 0.701 22 H 0.415 0.585 23 H 0.085 0.915 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.750 -9.585 2.928 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.183 1.183 6 H -0.176 1.176 7 C -1.173 5.173 8 H 0.132 0.868 9 S 2.823 3.177 10 O -1.036 7.036 11 O -1.029 7.029 12 N -0.870 5.870 13 C 0.037 3.963 14 H 0.091 0.909 15 C -0.181 4.181 16 C -0.154 4.154 17 C -0.182 4.182 18 C 0.034 3.966 19 H 0.095 0.905 20 O -0.391 6.391 21 H 0.109 0.891 22 H 0.249 0.751 23 H 0.104 0.896 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 11.070 -9.217 3.270 14.771 hybrid contribution 0.850 0.691 -0.618 1.257 sum 11.919 -8.527 2.651 14.893 Atomic orbital electron populations 1.69986 1.08660 1.32295 1.41601 1.26007 0.95401 1.05350 0.87545 0.85140 0.79054 0.74905 0.80123 1.17721 1.18344 1.17555 1.30919 1.06982 1.12885 1.66541 0.86781 0.99807 0.72503 0.73878 0.71519 1.93305 1.74975 1.88437 1.46894 1.93306 1.74435 1.88189 1.46969 1.55403 1.54560 1.49454 1.27559 1.21676 0.88929 0.99691 0.86040 0.90902 1.22991 0.98980 0.97658 0.98508 1.22287 0.92799 1.02660 0.97650 1.22825 0.99323 0.99800 0.96241 1.22813 0.87992 0.86735 0.99044 0.90476 1.86609 1.25363 1.35359 1.91802 0.89089 0.75076 0.89599 0.92217 0.88808 0.91502 0.88595 0.89375 0.75596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.87 13.19 21.45 0.28 -54.59 15 2 C 0.07 4.02 5.46 84.66 0.46 4.49 15 3 Si 0.99 43.17 29.54 68.60 2.03 45.20 15 4 H -0.25 -10.37 7.11 99.48 0.71 -9.67 15 5 H -0.26 -10.52 7.11 99.48 0.71 -9.82 15 6 H -0.25 -10.49 7.11 99.48 0.71 -9.78 15 7 C -1.04 -60.20 9.68 67.73 0.66 -59.55 15 8 H 0.11 6.19 7.81 -2.91 -0.02 6.17 15 9 S 2.72 151.63 4.94 -56.49 -0.28 151.35 15 10 O -1.05 -64.37 18.02 -128.00 -2.31 -66.67 15 11 O -1.04 -63.55 17.78 -128.00 -2.28 -65.83 15 12 N -1.11 -45.41 5.57 -164.83 -0.92 -46.33 15 13 C 0.14 5.14 3.14 46.09 0.14 5.28 15 14 H 0.07 3.05 7.91 -2.39 -0.02 3.03 15 15 C -0.14 -4.20 6.58 31.91 0.21 -3.99 15 16 C -0.12 -2.43 6.83 31.67 0.22 -2.21 15 17 C -0.14 -2.60 6.61 31.32 0.21 -2.39 15 18 C 0.09 2.45 3.99 31.32 0.13 2.57 15 19 H 0.08 1.75 7.82 -2.39 -0.02 1.73 15 20 O -0.58 -16.14 13.22 -148.98 -1.97 -18.11 15 21 H 0.30 16.42 8.31 -92.71 -0.77 15.65 15 22 H 0.41 14.21 8.65 -96.73 -0.84 13.37 15 23 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.09 1.48 8.14 -2.39 -0.02 1.46 15 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 27 H 0.10 1.25 8.14 -2.39 -0.02 1.23 15 28 H 0.09 1.38 7.95 -2.39 -0.02 1.36 15 29 H 0.39 6.37 9.11 -74.06 -0.67 5.69 15 Total: -1.00 -80.92 264.14 -3.76 -84.67 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.34 Total: 26.11 kcal Atomic # 6 Polarization: -57.82 SS G_CDS: 2.02 Total: -55.80 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -0.64 Total: -100.92 kcal Atomic # 8 Polarization: -144.06 SS G_CDS: -6.55 Total: -150.61 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 151.63 SS G_CDS: -0.28 Total: 151.35 kcal Total: -80.92 -3.76 -84.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306633281.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.092 kcal (2) G-P(sol) polarization free energy of solvation -80.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds