Wall clock time and date at job start Mon Mar 30 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47073 * 136.05985 * 90.00090 * 12 9 7 14 14 C 1.53491 * 87.98565 * 207.08451 * 13 12 9 15 15 C 1.47071 * 136.05761 * 269.62380 * 12 9 7 16 16 H 1.09004 * 113.46671 * 267.70130 * 15 12 9 17 17 C 1.50700 * 113.46557 * 38.13835 * 15 12 9 18 18 O 1.20824 * 119.99984 * 359.97438 * 17 15 12 19 19 O 1.34226 * 120.00212 * 180.02562 * 17 15 12 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 113.46325 * 321.86291 * 13 12 9 22 22 H 1.08997 * 113.46717 * 92.23881 * 13 12 9 23 23 H 1.08994 * 114.21174 * 87.52013 * 14 13 12 24 24 H 1.09001 * 114.20606 * 220.14758 * 14 13 12 25 25 H 0.96697 * 117.00189 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.9673 -4.7173 1.0054 14 6 4.0973 -4.9054 -0.0162 15 6 2.9626 -4.7126 -1.0357 16 1 2.4592 -5.6410 -1.3057 17 6 3.3645 -3.8961 -2.2369 18 8 3.0922 -2.7200 -2.2865 19 8 4.0240 -4.4757 -3.2522 20 1 -0.4850 0.8401 -0.0004 21 1 3.2620 -4.1306 1.8755 22 1 2.4647 -5.6463 1.2743 23 1 4.8401 -4.1077 -0.0131 24 1 4.5365 -5.9030 -0.0182 25 1 4.2610 -3.9113 -4.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306948818.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:16 Heat of formation + Delta-G solvation = -135.105328 kcal Electronic energy + Delta-G solvation = -15492.965917 eV Core-core repulsion = 12599.879588 eV Total energy + Delta-G solvation = -2893.086329 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 235.039 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27418 -38.20467 -35.67065 -35.07061 -33.89053 -32.94929 -28.16335 -27.19724 -25.97742 -22.05477 -20.77678 -18.50493 -17.76821 -17.62559 -16.69050 -16.02235 -15.19235 -14.79468 -14.55137 -14.01011 -13.76169 -12.96954 -12.83409 -12.44227 -11.93543 -11.71155 -11.31518 -11.14239 -11.12259 -10.92168 -10.50377 -10.25597 -10.22991 -10.12564 -9.86991 -9.12764 -8.90339 -8.38140 -6.57617 -5.12253 2.16143 2.62166 3.13434 3.19604 3.25784 3.30952 4.14568 4.43360 4.48195 4.76254 5.11747 5.29750 5.40891 5.52389 5.70773 5.81308 5.96167 5.99786 6.29780 6.83700 6.98063 7.29273 7.47580 8.16970 8.29734 9.03563 10.37290 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.011994 C = 0.010362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.123019 B = 2333.988702 C = 2701.646696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.130 3.870 3 Si 0.923 3.077 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.987 4.987 8 H 0.101 0.899 9 S 2.730 3.270 10 O -1.001 7.001 11 O -0.993 6.993 12 N -1.027 6.027 13 C 0.124 3.876 14 C -0.136 4.136 15 C 0.164 3.836 16 H 0.120 0.880 17 C 0.453 3.547 18 O -0.462 6.462 19 O -0.523 6.523 20 H 0.288 0.712 21 H 0.083 0.917 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 -9.189 -1.603 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.086 4.086 3 Si 0.748 3.252 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.198 1.198 7 C -1.122 5.122 8 H 0.120 0.880 9 S 2.833 3.167 10 O -0.992 6.992 11 O -0.984 6.984 12 N -0.862 5.862 13 C -0.002 4.002 14 C -0.175 4.175 15 C 0.055 3.945 16 H 0.137 0.863 17 C 0.291 3.709 18 O -0.344 6.344 19 O -0.336 6.336 20 H 0.098 0.902 21 H 0.101 0.899 22 H 0.099 0.901 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.352 -8.976 -1.269 12.326 hybrid contribution 0.964 1.681 -0.667 2.049 sum 9.315 -7.295 -1.936 11.989 Atomic orbital electron populations 1.69911 1.06734 1.30361 1.41528 1.24752 0.94459 1.00733 0.88667 0.86103 0.80438 0.80440 0.78269 1.18754 1.19765 1.19799 1.30371 1.05975 1.10792 1.65025 0.88031 1.00157 0.71163 0.72731 0.72631 1.93363 1.72080 1.87500 1.46283 1.93346 1.72205 1.87158 1.45649 1.61010 1.61671 1.51126 1.12409 1.22263 0.89760 0.95454 0.92725 1.23601 0.96069 1.03421 0.94375 1.21518 0.93853 0.93347 0.85819 0.86306 1.23738 0.75581 0.87804 0.83804 1.90973 1.48717 1.16541 1.78219 1.84463 1.70726 1.47757 1.30606 0.90174 0.89892 0.90070 0.88402 0.89090 0.73541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -26.46 13.19 55.43 0.73 -25.72 15 2 C 0.13 3.86 5.46 -17.82 -0.10 3.76 15 3 Si 0.92 22.01 29.54 -169.99 -5.02 16.99 15 4 H -0.26 -6.09 7.11 56.52 0.40 -5.69 15 5 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.99 -29.07 8.64 30.60 0.26 -28.80 15 8 H 0.10 2.82 7.81 -52.49 -0.41 2.41 15 9 S 2.73 77.38 4.67 -107.50 -0.50 76.88 15 10 O -1.00 -30.62 18.02 -57.17 -1.03 -31.65 15 11 O -0.99 -30.95 17.30 -62.19 -1.08 -32.02 15 12 N -1.03 -21.43 3.93 -119.00 -0.47 -21.90 15 13 C 0.12 1.83 8.72 -8.50 -0.07 1.75 15 14 C -0.14 -1.63 8.03 -26.08 -0.21 -1.84 15 15 C 0.16 2.65 4.64 -73.41 -0.34 2.31 15 16 H 0.12 1.55 8.14 -51.93 -0.42 1.13 15 17 C 0.45 8.11 7.91 36.01 0.28 8.39 15 18 O -0.46 -10.75 14.73 -22.72 -0.33 -11.08 15 19 O -0.52 -6.84 13.42 -39.25 -0.53 -7.36 15 20 H 0.29 7.99 8.31 -40.82 -0.34 7.65 15 21 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.10 1.19 8.12 -51.93 -0.42 0.77 15 24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 15 25 H 0.41 3.72 9.10 45.56 0.41 4.13 15 LS Contribution 245.43 15.07 3.70 3.70 Total: -1.00 -40.28 245.43 -5.94 -46.23 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -1.24 Total: 0.37 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -0.17 Total: -14.42 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 0.26 Total: -47.62 kcal Atomic # 8 Polarization: -79.15 SS G_CDS: -2.97 Total: -82.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 77.38 SS G_CDS: -0.50 Total: 76.88 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -40.28 -5.94 -46.23 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306948818.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.879 kcal (2) G-P(sol) polarization free energy of solvation -40.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds