Wall clock time and date at job start Mon Mar 30 2020 03:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99836 * 0.28505 * 7 2 1 10 10 O 1.42103 * 106.40082 * 293.25616 * 9 7 2 11 11 O 1.42095 * 106.40428 * 66.17927 * 9 7 2 12 12 N 1.65600 * 107.21522 * 179.72073 * 9 7 2 13 13 C 1.47073 * 136.05985 * 90.00090 * 12 9 7 14 14 C 1.53491 * 87.98565 * 207.08451 * 13 12 9 15 15 C 1.47071 * 136.05761 * 269.62380 * 12 9 7 16 16 H 1.09004 * 113.46671 * 267.70130 * 15 12 9 17 17 C 1.50700 * 113.46557 * 38.13835 * 15 12 9 18 18 O 1.20824 * 119.99984 * 359.97438 * 17 15 12 19 19 O 1.34226 * 120.00212 * 180.02562 * 17 15 12 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 113.46325 * 321.86291 * 13 12 9 22 22 H 1.08997 * 113.46717 * 92.23881 * 13 12 9 23 23 H 1.08994 * 114.21174 * 87.52013 * 14 13 12 24 24 H 1.09001 * 114.20606 * 220.14758 * 14 13 12 25 25 H 0.96697 * 117.00189 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 16 1.1234 -2.7200 -0.0064 10 8 0.4512 -2.8009 1.2430 11 8 0.4514 -2.7897 -1.2564 12 7 2.2481 -3.9354 -0.0117 13 6 2.9673 -4.7173 1.0054 14 6 4.0973 -4.9054 -0.0162 15 6 2.9626 -4.7126 -1.0357 16 1 2.4592 -5.6410 -1.3057 17 6 3.3645 -3.8961 -2.2369 18 8 3.0922 -2.7200 -2.2865 19 8 4.0240 -4.4757 -3.2522 20 1 -0.4850 0.8401 -0.0004 21 1 3.2620 -4.1306 1.8755 22 1 2.4647 -5.6463 1.2743 23 1 4.8401 -4.1077 -0.0131 24 1 4.5365 -5.9030 -0.0182 25 1 4.2610 -3.9113 -4.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306948818.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:16 Heat of formation + Delta-G solvation = -170.980731 kcal Electronic energy + Delta-G solvation = -15494.521592 eV Core-core repulsion = 12599.879588 eV Total energy + Delta-G solvation = -2894.642003 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 235.039 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.60570 -39.49303 -37.42541 -36.91049 -36.16134 -35.16289 -29.57223 -28.44172 -28.22462 -23.26169 -22.19676 -20.47691 -19.29247 -19.07795 -18.43960 -17.71309 -16.98965 -16.58640 -16.22255 -15.87614 -15.17547 -14.73387 -14.32751 -14.01328 -13.64699 -13.26725 -13.04429 -12.90191 -12.61758 -12.55169 -12.46540 -12.37207 -12.32598 -11.68400 -11.30926 -11.24521 -10.96340 -9.99692 -8.74408 -7.40108 0.20342 1.24714 1.28041 1.29008 1.46529 2.04786 2.20690 2.57663 2.80378 3.34477 3.78015 3.84548 4.02620 4.21695 4.39776 4.62815 4.74016 4.99305 5.21187 5.28848 5.37236 5.59058 5.70749 5.97243 6.80288 7.07035 8.22609 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.028945 B = 0.011994 C = 0.010362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.123019 B = 2333.988702 C = 2701.646696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.064 3.936 3 Si 0.992 3.008 4 H -0.252 1.252 5 H -0.262 1.262 6 H -0.252 1.252 7 C -1.007 5.007 8 H 0.108 0.892 9 S 2.740 3.260 10 O -1.042 7.042 11 O -1.038 7.038 12 N -1.050 6.050 13 C 0.111 3.889 14 C -0.101 4.101 15 C 0.149 3.851 16 H 0.156 0.844 17 C 0.455 3.545 18 O -0.527 6.527 19 O -0.501 6.501 20 H 0.297 0.703 21 H 0.080 0.920 22 H 0.115 0.885 23 H 0.094 0.906 24 H 0.150 0.850 25 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.314 -10.328 -1.565 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.147 4.147 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.187 1.187 6 H -0.176 1.176 7 C -1.141 5.141 8 H 0.126 0.874 9 S 2.844 3.156 10 O -1.033 7.033 11 O -1.029 7.029 12 N -0.890 5.890 13 C -0.012 4.012 14 C -0.140 4.140 15 C 0.041 3.959 16 H 0.173 0.827 17 C 0.296 3.704 18 O -0.415 6.415 19 O -0.313 6.313 20 H 0.107 0.893 21 H 0.099 0.901 22 H 0.133 0.867 23 H 0.113 0.887 24 H 0.168 0.832 25 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 10.833 -10.157 -1.242 14.902 hybrid contribution 0.290 1.830 -0.741 1.996 sum 11.124 -8.326 -1.984 14.036 Atomic orbital electron populations 1.69999 1.08656 1.31995 1.42893 1.26042 0.95460 1.05390 0.87810 0.85094 0.79265 0.75216 0.79402 1.17559 1.18673 1.17637 1.30717 1.06399 1.12179 1.64805 0.87418 0.99260 0.71676 0.73513 0.71111 1.93293 1.74111 1.88424 1.47452 1.93270 1.74374 1.88154 1.47084 1.60378 1.61035 1.50839 1.16784 1.22827 0.90285 0.95681 0.92443 1.23565 0.94003 1.06535 0.89928 1.22259 0.95316 0.93014 0.85326 0.82657 1.24196 0.74463 0.87042 0.84744 1.90959 1.51566 1.19332 1.79673 1.84413 1.69309 1.47270 1.30350 0.89317 0.90150 0.86709 0.88738 0.83171 0.71392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -57.62 13.19 21.45 0.28 -57.33 15 2 C 0.06 3.85 5.46 84.66 0.46 4.31 15 3 Si 0.99 45.13 29.54 68.60 2.03 47.15 15 4 H -0.25 -10.86 7.11 99.48 0.71 -10.15 15 5 H -0.26 -11.37 7.11 99.48 0.71 -10.67 15 6 H -0.25 -10.54 7.11 99.48 0.71 -9.84 15 7 C -1.01 -60.66 8.64 67.74 0.59 -60.07 15 8 H 0.11 6.10 7.81 -2.91 -0.02 6.07 15 9 S 2.74 159.67 4.67 -56.49 -0.26 159.41 15 10 O -1.04 -65.98 18.02 -128.00 -2.31 -68.28 15 11 O -1.04 -67.31 17.30 -123.20 -2.13 -69.44 15 12 N -1.05 -42.94 3.93 -530.42 -2.09 -45.03 15 13 C 0.11 2.97 8.72 83.18 0.73 3.69 15 14 C -0.10 -1.97 8.03 31.02 0.25 -1.72 15 15 C 0.15 4.39 4.64 41.13 0.19 4.58 15 16 H 0.16 3.42 8.14 -2.39 -0.02 3.40 15 17 C 0.45 15.60 7.91 71.24 0.56 16.16 15 18 O -0.53 -24.79 14.73 25.77 0.38 -24.41 15 19 O -0.50 -11.67 13.42 -51.38 -0.69 -12.36 15 20 H 0.30 16.94 8.31 -92.70 -0.77 16.17 15 21 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.11 2.28 8.14 -2.39 -0.02 2.26 15 23 H 0.09 1.95 8.12 -2.39 -0.02 1.93 15 24 H 0.15 1.30 8.14 -2.39 -0.02 1.28 15 25 H 0.42 6.78 9.10 -74.06 -0.67 6.10 15 Total: -1.00 -93.18 245.43 -1.46 -94.64 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.56 Total: 8.70 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 2.78 Total: -33.04 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -1.80 Total: -102.36 kcal Atomic # 8 Polarization: -169.75 SS G_CDS: -4.75 Total: -174.50 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Atomic # 16 Polarization: 159.67 SS G_CDS: -0.26 Total: 159.41 kcal Total: -93.18 -1.46 -94.64 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306948818.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.343 kcal (2) G-P(sol) polarization free energy of solvation -93.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds