Wall clock time and date at job start Mon Mar 30 2020 03:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64051 * 2 1 4 4 C 1.54335 * 111.00327 * 236.92762 * 2 1 3 5 5 N 1.47019 * 107.26622 * 219.60109 * 4 2 1 6 6 S 1.65594 * 125.65215 * 178.85248 * 5 4 2 7 7 O 1.42099 * 106.40788 * 156.17182 * 6 5 4 8 8 O 1.42107 * 106.40412 * 23.25277 * 6 5 4 9 9 C 1.76201 * 107.21719 * 269.71425 * 6 5 4 10 10 H 1.08002 * 120.00148 * 359.97438 * 9 6 5 11 11 C 1.37884 * 120.00146 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99573 * 180.27695 * 11 9 6 13 13 Si 1.86800 * 119.99781 * 0.02562 * 11 9 6 14 14 H 1.48501 * 109.46758 * 89.99934 * 13 11 9 15 15 H 1.48499 * 109.47026 * 209.99782 * 13 11 9 16 16 H 1.48496 * 109.47474 * 329.99818 * 13 11 9 17 17 C 1.47429 * 108.70256 * 358.58428 * 5 4 2 18 18 C 1.54908 * 104.83160 * 24.35562 * 17 5 4 19 19 H 1.08993 * 111.00232 * 81.06320 * 18 17 5 20 20 O 1.42896 * 111.00408 * 204.88038 * 18 17 5 21 21 H 1.08992 * 109.47375 * 296.85333 * 1 2 3 22 22 H 1.09004 * 109.47171 * 56.85612 * 1 2 3 23 23 H 1.09005 * 109.46839 * 176.85199 * 1 2 3 24 24 H 1.09003 * 109.99368 * 100.12659 * 4 2 1 25 25 H 1.08999 * 109.78024 * 338.95980 * 4 2 1 26 26 H 0.97004 * 119.99485 * 179.72881 * 12 11 9 27 27 H 1.08995 * 110.36643 * 143.19818 * 17 5 4 28 28 H 1.09006 * 110.36506 * 265.40661 * 17 5 4 29 29 H 0.96697 * 114.00123 * 298.54237 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0832 -0.7862 -1.2074 5 7 3.2494 -1.5469 -0.7355 6 16 4.1723 -2.5684 -1.6558 7 8 5.4439 -2.6382 -1.0255 8 8 3.9955 -2.1622 -3.0061 9 6 3.4621 -4.1754 -1.5227 10 1 2.5821 -4.3284 -0.9155 11 6 4.0297 -5.2378 -2.1938 12 7 3.4964 -6.4362 -2.0987 13 14 5.5521 -4.9734 -3.2435 14 1 6.7668 -5.1706 -2.4123 15 1 5.5558 -5.9476 -4.3643 16 1 5.5440 -3.5921 -3.7884 17 6 3.4652 -1.2447 0.6913 18 6 2.0790 -0.7934 1.2151 19 1 1.4470 -1.6529 1.4382 20 8 2.2140 0.0506 2.3602 21 1 -0.3634 0.4642 0.9168 22 1 -0.3634 0.5619 -0.8605 23 1 -0.3633 -1.0262 -0.0564 24 1 2.3849 -0.0959 -1.9951 25 1 1.3217 -1.4700 -1.5825 26 1 3.8934 -7.1828 -2.5740 27 1 3.7993 -2.1364 1.2216 28 1 4.1944 -0.4422 0.8030 29 1 2.6431 -0.3757 3.1146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307197999.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:39 Heat of formation + Delta-G solvation = -158.568232 kcal Electronic energy + Delta-G solvation = -15543.916963 eV Core-core repulsion = 12785.646301 eV Total energy + Delta-G solvation = -2758.270662 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.08771 -37.77287 -36.56509 -36.55909 -35.22620 -33.28077 -29.41588 -28.59149 -26.89671 -23.38640 -21.31965 -20.78670 -19.47263 -18.73734 -18.29004 -17.30645 -16.82803 -16.02943 -15.61304 -15.42827 -15.05017 -14.64744 -14.62564 -14.22331 -13.58544 -13.46927 -13.42066 -13.05225 -12.92964 -12.78111 -12.65876 -12.38626 -11.99265 -11.76002 -11.37430 -11.36139 -11.26308 -10.98826 -9.86571 -9.00368 -7.57024 -0.01273 1.02440 1.11636 1.18847 1.86246 2.35459 2.39130 3.19090 3.34100 3.41578 3.62315 4.02903 4.15333 4.26995 4.40548 4.49804 4.58657 4.75442 4.87618 4.91939 5.04772 5.12542 5.25149 5.37254 5.44140 5.59675 5.97479 6.49174 6.86852 8.17400 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.041421 B = 0.008812 C = 0.008700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.819089 B = 3176.862456 C = 3217.758994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.098 0.902 4 C 0.115 3.885 5 N -1.013 6.013 6 S 2.711 3.289 7 O -1.025 7.025 8 O -1.022 7.022 9 C -1.038 5.038 10 H 0.105 0.895 11 C 0.109 3.891 12 N -0.852 5.852 13 Si 0.823 3.177 14 H -0.238 1.238 15 H -0.216 1.216 16 H -0.230 1.230 17 C 0.083 3.917 18 C 0.106 3.894 19 H 0.082 0.918 20 O -0.561 6.561 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.292 0.708 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 10.467 6.087 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 H 0.116 0.884 4 C -0.010 4.010 5 N -0.853 5.853 6 S 2.813 3.187 7 O -1.015 7.015 8 O -1.013 7.013 9 C -1.170 5.170 10 H 0.124 0.876 11 C -0.108 4.108 12 N -0.482 5.482 13 Si 0.640 3.360 14 H -0.161 1.161 15 H -0.138 1.138 16 H -0.153 1.153 17 C -0.043 4.043 18 C 0.045 3.955 19 H 0.100 0.900 20 O -0.369 6.369 21 H 0.091 0.909 22 H 0.092 0.908 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -3.820 10.897 5.115 12.630 hybrid contribution 0.476 -1.407 0.085 1.488 sum -3.344 9.491 5.200 11.327 Atomic orbital electron populations 1.21750 0.91785 1.02630 1.03325 1.22201 0.97770 0.99655 0.91038 0.88361 1.22024 0.86659 0.94652 0.97694 1.58133 1.45236 1.60442 1.21521 1.00160 0.72395 0.74427 0.71675 1.93368 1.42288 1.88449 1.77400 1.93423 1.86955 1.84448 1.36457 1.31012 1.27464 1.15806 1.42764 0.87644 1.25165 0.97807 0.94252 0.93608 1.70007 1.39321 1.00813 1.38042 0.87515 0.81712 0.84172 0.82584 1.16096 1.13835 1.15261 1.22856 0.99779 1.01511 0.80164 1.22953 0.93303 0.92936 0.86309 0.90022 1.86432 1.83434 1.42425 1.24588 0.90861 0.90795 0.92441 0.90871 0.91294 0.89715 0.90634 0.90396 0.75084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.17 71.98 0.66 -2.05 15 2 C -0.09 -2.14 3.26 -9.60 -0.03 -2.17 15 3 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 4 C 0.11 3.70 6.60 86.73 0.57 4.27 15 5 N -1.01 -39.90 3.70 -506.40 -1.87 -41.77 15 6 S 2.71 137.73 4.44 -56.49 -0.25 137.48 15 7 O -1.02 -55.08 16.42 -128.00 -2.10 -57.18 15 8 O -1.02 -55.33 15.60 -128.00 -2.00 -57.33 15 9 C -1.04 -58.98 10.29 67.74 0.70 -58.28 15 10 H 0.11 6.12 8.06 -2.91 -0.02 6.09 15 11 C 0.11 6.28 5.47 84.66 0.46 6.74 15 12 N -0.85 -49.37 13.96 21.45 0.30 -49.07 15 13 Si 0.82 41.21 26.54 68.60 1.82 43.03 15 14 H -0.24 -11.50 7.11 99.48 0.71 -10.79 15 15 H -0.22 -9.47 7.11 99.48 0.71 -8.77 15 16 H -0.23 -11.88 5.61 99.48 0.56 -11.32 15 17 C 0.08 2.63 6.71 86.85 0.58 3.21 15 18 C 0.11 2.65 3.88 31.98 0.12 2.77 15 19 H 0.08 1.98 8.05 -2.39 -0.02 1.96 15 20 O -0.56 -11.74 13.47 -148.98 -2.01 -13.75 15 21 H 0.07 1.29 8.14 -2.39 -0.02 1.28 15 22 H 0.07 1.26 8.14 -2.38 -0.02 1.24 15 23 H 0.06 1.17 8.08 -2.38 -0.02 1.15 15 24 H 0.07 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.07 2.21 7.78 -2.39 -0.02 2.20 15 26 H 0.29 15.20 8.31 -92.71 -0.77 14.43 15 27 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 28 H 0.08 2.31 8.14 -2.38 -0.02 2.29 15 29 H 0.40 5.01 9.11 -74.06 -0.67 4.33 15 Total: -1.00 -70.40 257.56 -2.71 -73.11 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.33 Total: 10.98 kcal Atomic # 6 Polarization: -48.57 SS G_CDS: 3.07 Total: -45.50 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -1.57 Total: -90.84 kcal Atomic # 8 Polarization: -122.15 SS G_CDS: -6.11 Total: -128.26 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.82 Total: 43.03 kcal Atomic # 16 Polarization: 137.73 SS G_CDS: -0.25 Total: 137.48 kcal Total: -70.40 -2.71 -73.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307197999.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.458 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds