Wall clock time and date at job start Mon Mar 30 2020 03:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99534 * 2 1 4 4 H 1.48501 * 109.46932 * 269.99752 * 3 2 1 5 5 H 1.48498 * 109.47329 * 30.00049 * 3 2 1 6 6 H 1.48499 * 109.47093 * 149.99956 * 3 2 1 7 7 C 1.37880 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99585 * 0.02562 * 7 2 1 9 9 S 1.76191 * 119.99831 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.40388 * 66.46449 * 9 7 2 11 11 O 1.42098 * 106.40356 * 293.53975 * 9 7 2 12 12 N 1.65603 * 107.21681 * 180.02562 * 9 7 2 13 13 C 1.44650 * 118.64559 * 94.99902 * 12 9 7 14 14 C 1.54864 * 109.43884 * 268.77294 * 13 12 9 15 15 C 1.47658 * 109.97663 * 290.45099 * 14 13 12 16 16 C 1.52412 * 114.19397 * 62.25903 * 15 14 13 17 17 C 1.50796 * 109.87136 * 276.07619 * 16 15 14 18 18 O 1.42773 * 118.64057 * 274.99893 * 12 9 7 19 19 H 0.97002 * 120.00517 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47629 * 148.78390 * 13 12 9 21 21 H 1.08998 * 109.47511 * 28.76166 * 13 12 9 22 22 H 1.09003 * 109.38578 * 170.29753 * 14 13 12 23 23 H 1.08998 * 109.38622 * 50.61008 * 14 13 12 24 24 H 1.08999 * 108.53835 * 301.03630 * 15 14 13 25 25 H 1.09004 * 108.53546 * 183.47214 * 15 14 13 26 26 H 1.08995 * 109.40147 * 155.95723 * 16 15 14 27 27 H 1.08999 * 109.40508 * 36.20179 * 16 15 14 28 28 H 1.09002 * 109.38601 * 210.71099 * 17 16 15 29 29 H 1.09001 * 109.38358 * 330.39656 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 16 3.7665 -1.1939 0.0012 10 8 4.1673 -0.6492 1.2510 11 8 4.1683 -0.6497 -1.2485 12 7 4.2569 -2.7756 0.0011 13 6 4.5683 -3.4049 -1.2636 14 6 3.2970 -4.0864 -1.8271 15 6 2.9438 -5.2577 -1.0003 16 6 2.6029 -4.9209 0.4466 17 6 3.8680 -4.8196 1.2610 18 8 4.3547 -3.4619 1.2492 19 1 -0.4851 0.8400 0.0004 20 1 5.3465 -4.1536 -1.1151 21 1 4.9191 -2.6508 -1.9681 22 1 3.4834 -4.4095 -2.8513 23 1 2.4711 -3.3751 -1.8184 24 1 3.7841 -5.9519 -1.0058 25 1 2.0851 -5.7545 -1.4520 26 1 1.9675 -5.7038 0.8605 27 1 2.0724 -3.9694 0.4816 28 1 3.6622 -5.1213 2.2881 29 1 4.6252 -5.4790 0.8367 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307612342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:03 Heat of formation + Delta-G solvation = -98.139292 kcal Electronic energy + Delta-G solvation = -16146.451233 eV Core-core repulsion = 13390.800966 eV Total energy + Delta-G solvation = -2755.650267 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78985 -37.88746 -36.58658 -35.72638 -35.21647 -34.34223 -29.40921 -28.58041 -27.29150 -22.90739 -21.73351 -20.60258 -19.75762 -18.96700 -18.37265 -17.25438 -16.68844 -16.08501 -15.61291 -15.52817 -14.99821 -14.95672 -14.57959 -14.23279 -13.72978 -13.44521 -13.43805 -13.07314 -12.81749 -12.68028 -12.42635 -11.97353 -11.76396 -11.70777 -11.48740 -11.32693 -11.19352 -11.16579 -9.79590 -8.96454 -7.52102 -0.25344 1.03921 1.13393 1.20342 1.73015 1.88806 2.40758 2.98418 3.34641 3.76988 3.89876 3.99351 4.11921 4.26297 4.43412 4.48519 4.60738 4.66919 4.87615 4.97586 5.05336 5.18085 5.27387 5.30342 5.38844 5.50282 6.05290 6.27376 6.53008 8.20684 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.034613 B = 0.011935 C = 0.011150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.761989 B = 2345.517146 C = 2510.606549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.112 3.888 3 Si 0.818 3.182 4 H -0.232 1.232 5 H -0.218 1.218 6 H -0.234 1.234 7 C -1.029 5.029 8 H 0.110 0.890 9 S 2.702 3.298 10 O -1.021 7.021 11 O -1.004 7.004 12 N -0.856 5.856 13 C 0.088 3.912 14 C -0.154 4.154 15 C -0.113 4.113 16 C -0.160 4.160 17 C 0.025 3.975 18 O -0.156 6.156 19 H 0.292 0.708 20 H 0.114 0.886 21 H 0.102 0.898 22 H 0.107 0.893 23 H 0.044 0.956 24 H 0.087 0.913 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.123 0.877 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.886 -10.671 -2.245 12.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.105 4.105 3 Si 0.635 3.365 4 H -0.155 1.155 5 H -0.140 1.140 6 H -0.156 1.156 7 C -1.163 5.163 8 H 0.128 0.872 9 S 2.802 3.198 10 O -1.011 7.011 11 O -0.995 6.995 12 N -0.733 5.733 13 C -0.037 4.037 14 C -0.194 4.194 15 C -0.151 4.151 16 C -0.198 4.198 17 C -0.052 4.052 18 O -0.162 6.162 19 H 0.102 0.898 20 H 0.132 0.868 21 H 0.120 0.880 22 H 0.126 0.874 23 H 0.063 0.937 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.115 0.885 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.402 -9.831 -2.060 11.911 hybrid contribution -0.980 0.258 0.073 1.016 sum 5.422 -9.573 -1.987 11.180 Atomic orbital electron populations 1.69997 1.07286 1.30464 1.40258 1.25110 0.95617 1.01191 0.88630 0.87596 0.82868 0.83127 0.82941 1.15528 1.13962 1.15638 1.30952 1.17303 1.01783 1.66214 0.87175 1.00727 0.76186 0.70399 0.72471 1.93407 1.85014 1.76622 1.46050 1.93413 1.85466 1.75256 1.45379 1.59579 1.84542 1.25720 1.03443 1.22113 0.98896 1.00322 0.82361 1.21611 0.97680 0.98637 1.01432 1.20503 1.02928 0.97780 0.93855 1.21747 0.98064 1.02941 0.97044 1.23387 0.96156 0.82448 1.03203 1.90831 1.85134 1.29063 1.11165 0.89781 0.86771 0.87969 0.87427 0.93733 0.89484 0.90911 0.88471 0.93490 0.85902 0.89445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.19 13.96 21.45 0.30 -48.89 15 2 C 0.11 6.46 5.47 84.66 0.46 6.92 15 3 Si 0.82 41.25 26.54 68.60 1.82 43.07 15 4 H -0.23 -11.15 7.11 99.48 0.71 -10.44 15 5 H -0.22 -9.66 7.11 99.48 0.71 -8.95 15 6 H -0.23 -12.32 5.61 99.48 0.56 -11.76 15 7 C -1.03 -58.75 10.19 67.73 0.69 -58.06 15 8 H 0.11 6.40 6.54 -2.91 -0.02 6.38 15 9 S 2.70 141.03 4.30 -56.49 -0.24 140.78 15 10 O -1.02 -58.83 15.70 -122.82 -1.93 -60.76 15 11 O -1.00 -52.88 15.18 -128.00 -1.94 -54.83 15 12 N -0.86 -35.49 3.12 -188.15 -0.59 -36.08 15 13 C 0.09 2.81 5.78 87.36 0.51 3.31 15 14 C -0.15 -4.48 5.81 29.56 0.17 -4.31 15 15 C -0.11 -2.74 5.19 28.73 0.15 -2.59 15 16 C -0.16 -4.54 5.48 29.68 0.16 -4.38 15 17 C 0.03 0.68 6.74 71.27 0.48 1.16 15 18 O -0.16 -6.09 11.35 -31.80 -0.36 -6.45 15 19 H 0.29 15.18 8.31 -92.71 -0.77 14.41 15 20 H 0.11 2.77 8.12 -2.39 -0.02 2.75 15 21 H 0.10 3.36 6.79 -2.39 -0.02 3.34 15 22 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.04 1.64 8.04 -2.39 -0.02 1.62 15 24 H 0.09 1.58 7.45 -2.39 -0.02 1.56 15 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 15 26 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.05 1.80 6.15 -2.39 -0.01 1.78 15 28 H 0.12 2.74 8.14 -2.39 -0.02 2.72 15 29 H 0.09 1.82 7.39 -2.39 -0.02 1.80 15 Total: -1.00 -70.46 245.96 0.68 -69.78 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.00 Total: 11.30 kcal Atomic # 6 Polarization: -60.56 SS G_CDS: 2.62 Total: -57.94 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -0.29 Total: -84.97 kcal Atomic # 8 Polarization: -117.80 SS G_CDS: -4.23 Total: -122.03 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.82 Total: 43.07 kcal Atomic # 16 Polarization: 141.03 SS G_CDS: -0.24 Total: 140.78 kcal Total: -70.46 0.68 -69.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307612342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.355 kcal (2) G-P(sol) polarization free energy of solvation -70.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds