Wall clock time and date at job start Mon Mar 30 2020 03:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00165 * 2 1 4 4 H 1.48495 * 109.47424 * 274.68897 * 3 2 1 5 5 H 1.48506 * 109.46819 * 34.68340 * 3 2 1 6 6 H 1.48497 * 109.47205 * 154.68232 * 3 2 1 7 7 C 1.38817 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99688 * 197.00865 * 7 2 1 9 9 N 1.36939 * 120.00003 * 17.00480 * 7 2 1 10 10 C 1.46383 * 119.69934 * 33.68510 * 9 7 2 11 11 C 1.53182 * 109.50769 * 115.72571 * 10 9 7 12 12 S 1.81668 * 108.94885 * 58.25757 * 11 10 9 13 13 O 1.42098 * 108.65613 * 190.08833 * 12 11 10 14 14 O 1.42108 * 108.65180 * 58.78543 * 12 11 10 15 15 C 1.81663 * 101.38822 * 304.43815 * 12 11 10 16 16 C 1.46394 * 119.60045 * 213.65671 * 9 7 2 17 17 H 1.09005 * 109.37409 * 124.20314 * 16 9 7 18 18 C 1.53002 * 109.56207 * 4.22460 * 16 9 7 19 19 O 1.42897 * 109.46925 * 64.90564 * 18 16 9 20 20 H 0.96991 * 120.00231 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46852 * 355.71730 * 10 9 7 22 22 H 1.09001 * 109.46762 * 235.73913 * 10 9 7 23 23 H 1.09000 * 109.56191 * 298.41902 * 11 10 9 24 24 H 1.09003 * 109.56230 * 178.09957 * 11 10 9 25 25 H 1.08998 * 109.56047 * 175.40452 * 15 12 11 26 26 H 1.09007 * 109.55747 * 295.61315 * 15 12 11 27 27 H 1.08998 * 109.47342 * 184.90658 * 18 16 9 28 28 H 1.08994 * 109.46599 * 304.90443 * 18 16 9 29 29 H 0.96702 * 113.99874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3987 2.1036 -1.3953 5 1 1.5006 2.6220 0.7967 6 1 3.5938 1.4135 0.5987 7 6 2.0103 -1.2022 -0.0005 8 1 3.0548 -1.2227 0.2730 9 7 1.3705 -2.3620 -0.3479 10 6 0.3140 -2.3322 -1.3607 11 6 0.7510 -3.1501 -2.5799 12 16 1.1050 -4.8521 -2.0525 13 8 1.7293 -5.5406 -3.1274 14 8 -0.0668 -5.3981 -1.4624 15 6 2.3373 -4.5741 -0.7469 16 6 1.7515 -3.6194 0.2979 17 1 0.8710 -4.0739 0.7521 18 6 2.7977 -3.3432 1.3797 19 8 2.2151 -2.5474 2.4137 20 1 -0.4850 0.8400 0.0004 21 1 0.1289 -1.3013 -1.6623 22 1 -0.5992 -2.7586 -0.9456 23 1 1.6483 -2.7083 -3.0132 24 1 -0.0486 -3.1565 -3.3207 25 1 2.5882 -5.5235 -0.2738 26 1 3.2353 -4.1340 -1.1805 27 1 3.1443 -4.2875 1.7995 28 1 3.6409 -2.8092 0.9416 29 1 2.8229 -2.3328 3.1346 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307639496.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:49 Heat of formation + Delta-G solvation = -116.424957 kcal Electronic energy + Delta-G solvation = -15928.135395 eV Core-core repulsion = 13171.692203 eV Total energy + Delta-G solvation = -2756.443193 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.30822 -37.93663 -37.03448 -36.75394 -34.15921 -32.91693 -30.49041 -27.22201 -26.20860 -23.77480 -21.67219 -19.83086 -18.51420 -18.20562 -17.60258 -17.07118 -16.93497 -16.50644 -16.05788 -15.44332 -15.26142 -14.42543 -14.06759 -13.73360 -13.51041 -13.34362 -13.21737 -13.03459 -12.73582 -12.68603 -12.52456 -12.19316 -12.03728 -11.91306 -11.39653 -10.96459 -10.59809 -10.45694 -8.72574 -7.84826 -5.37445 -0.78729 1.50699 1.52777 1.60485 1.82539 2.52220 2.75474 3.06018 3.31299 3.37307 3.58365 4.04033 4.06750 4.12688 4.36144 4.45787 4.56203 4.62019 4.71027 4.92921 5.15906 5.27209 5.57030 5.76156 6.43892 7.12082 7.22199 7.78477 8.25515 9.23411 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.010599 C = 0.009066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.528359 B = 2641.031164 C = 3087.609856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.044 4.044 3 Si 0.962 3.038 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.264 1.264 7 C -0.237 4.237 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.170 3.830 11 C -0.608 4.608 12 S 2.433 3.567 13 O -0.979 6.979 14 O -0.984 6.984 15 C -0.600 4.600 16 C 0.165 3.835 17 H 0.040 0.960 18 C 0.096 3.904 19 O -0.575 6.575 20 H 0.248 0.752 21 H 0.088 0.912 22 H 0.023 0.977 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.161 0.839 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.281 -6.254 -0.922 9.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.240 4.240 3 Si 0.791 3.209 4 H -0.215 1.215 5 H -0.232 1.232 6 H -0.189 1.189 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.321 5.321 10 C 0.042 3.958 11 C -0.741 4.741 12 S 2.621 3.379 13 O -0.976 6.976 14 O -0.981 6.981 15 C -0.734 4.734 16 C 0.057 3.943 17 H 0.057 0.943 18 C 0.018 3.982 19 O -0.381 6.381 20 H 0.057 0.943 21 H 0.106 0.894 22 H 0.041 0.959 23 H 0.162 0.838 24 H 0.160 0.840 25 H 0.179 0.821 26 H 0.173 0.827 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 6.287 -7.013 -1.626 9.558 hybrid contribution 0.668 1.769 0.633 1.995 sum 6.955 -5.244 -0.993 8.766 Atomic orbital electron populations 1.70155 1.06849 1.25760 1.55068 1.25858 0.95764 1.01598 1.00762 0.85344 0.78427 0.80058 0.77070 1.21515 1.23158 1.18870 1.19296 0.92962 0.84413 1.39990 0.90190 1.44296 1.42080 1.03923 1.41775 1.20373 0.89374 1.00987 0.85051 1.30514 1.12613 1.21716 1.09289 1.07181 0.76307 0.77815 0.76609 1.93505 1.77890 1.72217 1.54013 1.93498 1.48360 1.77532 1.78693 1.30414 1.17067 1.09957 1.15986 1.20318 0.96474 0.86638 0.90853 0.94261 1.22082 0.94271 0.94076 0.87804 1.86714 1.42352 1.74156 1.34894 0.94258 0.89386 0.95869 0.83798 0.83994 0.82146 0.82695 0.91137 0.92657 0.77028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.97 11.34 21.65 0.25 -52.72 15 2 C -0.04 -2.31 4.87 84.86 0.41 -1.90 15 3 Si 0.96 42.30 29.59 68.60 2.03 44.32 15 4 H -0.29 -12.54 7.11 99.48 0.71 -11.83 15 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 15 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15 7 C -0.24 -11.54 7.58 84.03 0.64 -10.90 15 8 H 0.08 3.68 6.15 -2.91 -0.02 3.66 15 9 N -0.60 -26.86 2.79 -677.87 -1.89 -28.75 15 10 C 0.17 7.53 5.34 86.46 0.46 7.99 15 11 C -0.61 -20.13 6.55 72.04 0.47 -19.65 15 12 S 2.43 77.60 5.29 -56.49 -0.30 77.30 15 13 O -0.98 -34.04 18.10 -127.39 -2.31 -36.35 15 14 O -0.98 -38.59 18.02 -127.39 -2.30 -40.88 15 15 C -0.60 -16.51 5.83 72.04 0.42 -16.09 15 16 C 0.16 6.11 2.97 45.07 0.13 6.25 15 17 H 0.04 1.62 8.14 -2.38 -0.02 1.61 15 18 C 0.10 3.09 5.78 71.98 0.42 3.50 15 19 O -0.58 -21.53 12.48 -148.98 -1.86 -23.39 15 20 H 0.25 13.81 8.31 -92.71 -0.77 13.04 15 21 H 0.09 4.42 5.80 -2.39 -0.01 4.40 15 22 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15 23 H 0.14 4.28 8.14 -2.39 -0.02 4.26 15 24 H 0.14 4.05 8.14 -2.39 -0.02 4.04 15 25 H 0.16 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.15 3.61 8.14 -2.38 -0.02 3.59 15 27 H 0.07 1.69 8.14 -2.39 -0.02 1.68 15 28 H 0.06 1.71 6.61 -2.39 -0.02 1.70 15 29 H 0.38 10.02 9.12 -74.06 -0.68 9.35 15 Total: -1.00 -71.89 250.83 -2.94 -74.83 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.49 Total: 16.44 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 2.95 Total: -30.80 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.65 Total: -81.47 kcal Atomic # 8 Polarization: -94.15 SS G_CDS: -6.46 Total: -100.62 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 77.60 SS G_CDS: -0.30 Total: 77.30 kcal Total: -71.89 -2.94 -74.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307639496.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.599 kcal (2) G-P(sol) polarization free energy of solvation -71.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds