Wall clock time and date at job start Mon Mar 30 2020 03:37:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86794 * 120.00165 * 2 1
4 4 H 1.48495 * 109.47424 * 274.68897 * 3 2 1
5 5 H 1.48506 * 109.46819 * 34.68340 * 3 2 1
6 6 H 1.48497 * 109.47205 * 154.68232 * 3 2 1
7 7 C 1.38817 * 120.00013 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99688 * 197.00865 * 7 2 1
9 9 N 1.36939 * 120.00003 * 17.00480 * 7 2 1
10 10 C 1.46383 * 119.69934 * 33.68510 * 9 7 2
11 11 C 1.53182 * 109.50769 * 115.72571 * 10 9 7
12 12 S 1.81668 * 108.94885 * 58.25757 * 11 10 9
13 13 O 1.42098 * 108.65613 * 190.08833 * 12 11 10
14 14 O 1.42108 * 108.65180 * 58.78543 * 12 11 10
15 15 C 1.81663 * 101.38822 * 304.43815 * 12 11 10
16 16 C 1.46394 * 119.60045 * 213.65671 * 9 7 2
17 17 H 1.09005 * 109.37409 * 124.20314 * 16 9 7
18 18 C 1.53002 * 109.56207 * 4.22460 * 16 9 7
19 19 O 1.42897 * 109.46925 * 64.90564 * 18 16 9
20 20 H 0.96991 * 120.00231 * 359.97438 * 1 2 3
21 21 H 1.09003 * 109.46852 * 355.71730 * 10 9 7
22 22 H 1.09001 * 109.46762 * 235.73913 * 10 9 7
23 23 H 1.09000 * 109.56191 * 298.41902 * 11 10 9
24 24 H 1.09003 * 109.56230 * 178.09957 * 11 10 9
25 25 H 1.08998 * 109.56047 * 175.40452 * 15 12 11
26 26 H 1.09007 * 109.55747 * 295.61315 * 15 12 11
27 27 H 1.08998 * 109.47342 * 184.90658 * 18 16 9
28 28 H 1.08994 * 109.46599 * 304.90443 * 18 16 9
29 29 H 0.96702 * 113.99874 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3987 2.1036 -1.3953
5 1 1.5006 2.6220 0.7967
6 1 3.5938 1.4135 0.5987
7 6 2.0103 -1.2022 -0.0005
8 1 3.0548 -1.2227 0.2730
9 7 1.3705 -2.3620 -0.3479
10 6 0.3140 -2.3322 -1.3607
11 6 0.7510 -3.1501 -2.5799
12 16 1.1050 -4.8521 -2.0525
13 8 1.7293 -5.5406 -3.1274
14 8 -0.0668 -5.3981 -1.4624
15 6 2.3373 -4.5741 -0.7469
16 6 1.7515 -3.6194 0.2979
17 1 0.8710 -4.0739 0.7521
18 6 2.7977 -3.3432 1.3797
19 8 2.2151 -2.5474 2.4137
20 1 -0.4850 0.8400 0.0004
21 1 0.1289 -1.3013 -1.6623
22 1 -0.5992 -2.7586 -0.9456
23 1 1.6483 -2.7083 -3.0132
24 1 -0.0486 -3.1565 -3.3207
25 1 2.5882 -5.5235 -0.2738
26 1 3.2353 -4.1340 -1.1805
27 1 3.1443 -4.2875 1.7995
28 1 3.6409 -2.8092 0.9416
29 1 2.8229 -2.3328 3.1346
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307639496.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:49
Heat of formation + Delta-G solvation = -116.424957 kcal
Electronic energy + Delta-G solvation = -15928.135395 eV
Core-core repulsion = 13171.692203 eV
Total energy + Delta-G solvation = -2756.443193 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 235.071 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.30822 -37.93663 -37.03448 -36.75394 -34.15921 -32.91693 -30.49041 -27.22201
-26.20860 -23.77480 -21.67219 -19.83086 -18.51420 -18.20562 -17.60258 -17.07118
-16.93497 -16.50644 -16.05788 -15.44332 -15.26142 -14.42543 -14.06759 -13.73360
-13.51041 -13.34362 -13.21737 -13.03459 -12.73582 -12.68603 -12.52456 -12.19316
-12.03728 -11.91306 -11.39653 -10.96459 -10.59809 -10.45694 -8.72574 -7.84826
-5.37445 -0.78729 1.50699 1.52777 1.60485 1.82539 2.52220 2.75474
3.06018 3.31299 3.37307 3.58365 4.04033 4.06750 4.12688 4.36144
4.45787 4.56203 4.62019 4.71027 4.92921 5.15906 5.27209 5.57030
5.76156 6.43892 7.12082 7.22199 7.78477 8.25515 9.23411
Molecular weight = 235.07amu
Principal moments of inertia in cm(-1)
A = 0.031864 B = 0.010599 C = 0.009066
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 878.528359 B = 2641.031164 C = 3087.609856
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.044 4.044
3 Si 0.962 3.038
4 H -0.288 1.288
5 H -0.304 1.304
6 H -0.264 1.264
7 C -0.237 4.237
8 H 0.081 0.919
9 N -0.599 5.599
10 C 0.170 3.830
11 C -0.608 4.608
12 S 2.433 3.567
13 O -0.979 6.979
14 O -0.984 6.984
15 C -0.600 4.600
16 C 0.165 3.835
17 H 0.040 0.960
18 C 0.096 3.904
19 O -0.575 6.575
20 H 0.248 0.752
21 H 0.088 0.912
22 H 0.023 0.977
23 H 0.144 0.856
24 H 0.142 0.858
25 H 0.161 0.839
26 H 0.155 0.845
27 H 0.071 0.929
28 H 0.055 0.945
29 H 0.382 0.618
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.281 -6.254 -0.922 9.642
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.578 5.578
2 C -0.240 4.240
3 Si 0.791 3.209
4 H -0.215 1.215
5 H -0.232 1.232
6 H -0.189 1.189
7 C -0.367 4.367
8 H 0.098 0.902
9 N -0.321 5.321
10 C 0.042 3.958
11 C -0.741 4.741
12 S 2.621 3.379
13 O -0.976 6.976
14 O -0.981 6.981
15 C -0.734 4.734
16 C 0.057 3.943
17 H 0.057 0.943
18 C 0.018 3.982
19 O -0.381 6.381
20 H 0.057 0.943
21 H 0.106 0.894
22 H 0.041 0.959
23 H 0.162 0.838
24 H 0.160 0.840
25 H 0.179 0.821
26 H 0.173 0.827
27 H 0.089 0.911
28 H 0.073 0.927
29 H 0.230 0.770
Dipole moment (debyes) X Y Z Total
from point charges 6.287 -7.013 -1.626 9.558
hybrid contribution 0.668 1.769 0.633 1.995
sum 6.955 -5.244 -0.993 8.766
Atomic orbital electron populations
1.70155 1.06849 1.25760 1.55068 1.25858 0.95764 1.01598 1.00762
0.85344 0.78427 0.80058 0.77070 1.21515 1.23158 1.18870 1.19296
0.92962 0.84413 1.39990 0.90190 1.44296 1.42080 1.03923 1.41775
1.20373 0.89374 1.00987 0.85051 1.30514 1.12613 1.21716 1.09289
1.07181 0.76307 0.77815 0.76609 1.93505 1.77890 1.72217 1.54013
1.93498 1.48360 1.77532 1.78693 1.30414 1.17067 1.09957 1.15986
1.20318 0.96474 0.86638 0.90853 0.94261 1.22082 0.94271 0.94076
0.87804 1.86714 1.42352 1.74156 1.34894 0.94258 0.89386 0.95869
0.83798 0.83994 0.82146 0.82695 0.91137 0.92657 0.77028
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 27.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -52.97 11.34 21.65 0.25 -52.72 15
2 C -0.04 -2.31 4.87 84.86 0.41 -1.90 15
3 Si 0.96 42.30 29.59 68.60 2.03 44.32 15
4 H -0.29 -12.54 7.11 99.48 0.71 -11.83 15
5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 15
6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 15
7 C -0.24 -11.54 7.58 84.03 0.64 -10.90 15
8 H 0.08 3.68 6.15 -2.91 -0.02 3.66 15
9 N -0.60 -26.86 2.79 -677.87 -1.89 -28.75 15
10 C 0.17 7.53 5.34 86.46 0.46 7.99 15
11 C -0.61 -20.13 6.55 72.04 0.47 -19.65 15
12 S 2.43 77.60 5.29 -56.49 -0.30 77.30 15
13 O -0.98 -34.04 18.10 -127.39 -2.31 -36.35 15
14 O -0.98 -38.59 18.02 -127.39 -2.30 -40.88 15
15 C -0.60 -16.51 5.83 72.04 0.42 -16.09 15
16 C 0.16 6.11 2.97 45.07 0.13 6.25 15
17 H 0.04 1.62 8.14 -2.38 -0.02 1.61 15
18 C 0.10 3.09 5.78 71.98 0.42 3.50 15
19 O -0.58 -21.53 12.48 -148.98 -1.86 -23.39 15
20 H 0.25 13.81 8.31 -92.71 -0.77 13.04 15
21 H 0.09 4.42 5.80 -2.39 -0.01 4.40 15
22 H 0.02 1.11 8.14 -2.39 -0.02 1.09 15
23 H 0.14 4.28 8.14 -2.39 -0.02 4.26 15
24 H 0.14 4.05 8.14 -2.39 -0.02 4.04 15
25 H 0.16 3.27 8.14 -2.39 -0.02 3.25 15
26 H 0.15 3.61 8.14 -2.38 -0.02 3.59 15
27 H 0.07 1.69 8.14 -2.39 -0.02 1.68 15
28 H 0.06 1.71 6.61 -2.39 -0.02 1.70 15
29 H 0.38 10.02 9.12 -74.06 -0.68 9.35 15
Total: -1.00 -71.89 250.83 -2.94 -74.83
By element:
Atomic # 1 Polarization: 15.95 SS G_CDS: 0.49 Total: 16.44 kcal
Atomic # 6 Polarization: -33.75 SS G_CDS: 2.95 Total: -30.80 kcal
Atomic # 7 Polarization: -79.83 SS G_CDS: -1.65 Total: -81.47 kcal
Atomic # 8 Polarization: -94.15 SS G_CDS: -6.46 Total: -100.62 kcal
Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal
Atomic # 16 Polarization: 77.60 SS G_CDS: -0.30 Total: 77.30 kcal
Total: -71.89 -2.94 -74.83 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307639496.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.599 kcal
(2) G-P(sol) polarization free energy of solvation -71.891 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.490 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.425 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds