Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99556 * 2 1 4 4 C 1.50704 * 109.46836 * 274.99432 * 3 2 1 5 5 H 1.07997 * 120.00148 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00064 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99564 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99930 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46858 * 119.99841 * 8 6 4 11 11 H 1.48497 * 109.46826 * 239.99625 * 8 6 4 12 12 S 1.65590 * 120.00244 * 179.97438 * 2 1 3 13 13 O 1.42098 * 104.28153 * 333.93191 * 12 2 1 14 14 O 1.42107 * 104.27981 * 206.07405 * 12 2 1 15 15 C 1.81402 * 104.44914 * 90.00515 * 12 2 1 16 16 C 1.54037 * 113.81582 * 81.48974 * 15 12 2 17 17 O 1.44573 * 85.38193 * 136.86540 * 16 15 12 18 18 C 1.44177 * 93.32946 * 335.80455 * 17 16 15 19 19 H 1.08994 * 109.47506 * 270.00465 * 1 2 3 20 20 H 1.09000 * 109.47028 * 30.00889 * 1 2 3 21 21 H 1.09005 * 109.46815 * 150.00328 * 1 2 3 22 22 H 1.09001 * 109.47278 * 34.99226 * 3 2 1 23 23 H 1.08996 * 109.47202 * 155.00109 * 3 2 1 24 24 H 0.97001 * 119.99672 * 180.02562 * 7 6 4 25 25 H 1.09002 * 112.99728 * 309.66634 * 15 12 2 26 26 H 1.08998 * 113.86554 * 251.07238 * 16 15 12 27 27 H 1.09005 * 113.86612 * 22.78314 * 16 15 12 28 28 H 1.09001 * 113.86262 * 270.04398 * 18 17 16 29 29 H 1.08999 * 113.98669 * 138.35214 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7656 -1.4155 5 1 1.9283 1.1938 -2.2332 6 6 3.0006 2.9504 -1.6666 7 7 3.5032 3.6470 -0.6708 8 14 3.1784 3.5666 -3.4211 9 1 2.5301 2.6071 -4.3508 10 1 2.5277 4.8954 -3.5473 11 1 4.6192 3.6868 -3.7598 12 16 2.2930 -1.4340 0.0006 13 8 1.3971 -2.3558 0.6062 14 8 3.5396 -1.1188 0.6058 15 6 2.5195 -1.8267 -1.7558 16 6 3.7031 -1.0896 -2.4104 17 8 3.9986 -2.3604 -3.0332 18 6 3.3250 -3.1156 -2.0063 19 1 -0.3634 0.0001 1.0276 20 1 -0.3633 0.8899 -0.5140 21 1 -0.3633 -0.8901 -0.5138 22 1 1.6500 2.0044 0.5893 23 1 3.1857 1.1179 0.4343 24 1 3.9666 4.4807 -0.8474 25 1 1.5937 -1.7681 -2.3281 26 1 3.4041 -0.3112 -3.1124 27 1 4.4626 -0.7585 -1.7021 28 1 3.9693 -3.4015 -1.1748 29 1 2.7259 -3.9433 -2.3858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308258881.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = -75.024126 kcal Electronic energy + Delta-G solvation = -15764.072863 eV Core-core repulsion = 13009.424945 eV Total energy + Delta-G solvation = -2754.647918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93708 -36.66906 -35.67332 -35.37312 -32.57075 -29.87256 -27.87288 -26.47323 -25.15603 -22.44841 -21.14017 -18.42803 -17.34676 -16.95971 -16.50525 -16.20626 -15.70595 -15.20846 -14.57579 -13.87038 -13.52680 -13.26026 -12.71770 -12.42669 -12.25496 -12.11693 -11.82050 -11.63346 -11.38646 -11.21133 -11.18351 -10.82122 -10.57701 -10.26693 -9.93183 -9.81013 -9.58306 -8.58127 -8.05636 -6.19435 -4.27726 0.74908 3.12815 3.18989 3.28499 3.29402 3.64550 3.88402 4.28338 4.32351 4.77766 4.96037 5.14951 5.16437 5.40485 5.50595 5.59221 5.98112 6.03644 6.10101 6.20644 6.25696 6.48421 7.26928 7.34092 7.54948 7.76656 8.05465 8.77245 9.39238 10.88265 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.011519 C = 0.009198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.496647 B = 2430.258405 C = 3043.317989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.986 5.986 3 C 0.241 3.759 4 C -0.548 4.548 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.890 3.110 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.281 1.281 12 S 2.611 3.389 13 O -0.973 6.973 14 O -0.948 6.948 15 C -0.680 4.680 16 C 0.086 3.914 17 O -0.376 6.376 18 C 0.069 3.931 19 H 0.047 0.953 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.040 0.960 23 H 0.055 0.945 24 H 0.265 0.735 25 H 0.156 0.844 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -8.585 -2.176 9.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.826 5.826 3 C 0.119 3.881 4 C -0.587 4.587 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.207 1.207 12 S 2.701 3.299 13 O -0.964 6.964 14 O -0.938 6.938 15 C -0.787 4.787 16 C 0.009 3.991 17 O -0.294 6.294 18 C -0.010 4.010 19 H 0.065 0.935 20 H 0.093 0.907 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.174 0.826 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.103 0.897 29 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.675 -8.943 -1.618 9.473 hybrid contribution -0.289 0.789 -1.558 1.770 sum -2.964 -8.154 -3.177 9.239 Atomic orbital electron populations 1.21255 0.79881 1.02053 1.00957 1.57257 1.14087 1.22703 1.88553 1.19293 0.92561 0.78740 0.97513 1.21590 1.36955 1.07214 0.92921 0.91907 1.24951 0.95093 0.96448 0.97209 1.69938 1.36377 1.15085 1.30886 0.86581 0.78131 0.79049 0.84543 1.19619 1.20797 1.20652 1.04945 0.74274 0.73668 0.77028 1.93526 1.64884 1.64295 1.73675 1.93582 1.44519 1.82994 1.72720 1.33677 1.09531 1.05705 1.29784 1.23748 0.91246 0.87473 0.96650 1.89724 1.79391 1.18305 1.42007 1.23461 0.92205 0.93081 0.92248 0.93475 0.90690 0.92858 0.94177 0.92688 0.92476 0.82572 0.86753 0.87620 0.89715 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.73 10.22 59.85 0.61 2.35 15 2 N -0.99 -19.57 3.10 -123.05 -0.38 -19.95 15 3 C 0.24 5.73 5.39 -5.19 -0.03 5.71 15 4 C -0.55 -13.49 8.88 -34.44 -0.31 -13.80 15 5 H 0.06 1.46 7.37 -52.49 -0.39 1.08 15 6 C 0.07 1.73 5.46 -17.82 -0.10 1.63 15 7 N -0.89 -24.44 13.29 55.43 0.74 -23.70 15 8 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 15 9 H -0.27 -5.89 7.11 56.52 0.40 -5.48 15 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 12 S 2.61 48.68 5.36 -107.50 -0.58 48.10 15 13 O -0.97 -18.96 17.09 -57.54 -0.98 -19.94 15 14 O -0.95 -20.53 15.75 -57.54 -0.91 -21.44 15 15 C -0.68 -10.70 4.75 -25.65 -0.12 -10.82 15 16 C 0.09 1.49 8.35 37.64 0.31 1.80 15 17 O -0.38 -6.32 12.47 -35.23 -0.44 -6.76 15 18 C 0.07 0.96 8.82 37.64 0.33 1.29 15 19 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.07 1.21 8.07 -51.93 -0.42 0.79 15 21 H 0.05 0.75 7.79 -51.93 -0.40 0.34 15 22 H 0.04 1.00 8.11 -51.93 -0.42 0.58 15 23 H 0.06 1.43 6.81 -51.93 -0.35 1.08 15 24 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 25 H 0.16 2.15 8.14 -51.93 -0.42 1.72 15 26 H 0.11 1.99 7.65 -51.93 -0.40 1.60 15 27 H 0.11 1.91 7.46 -51.93 -0.39 1.52 15 28 H 0.08 1.06 8.10 -51.93 -0.42 0.64 15 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 263.87 15.07 3.98 3.98 Total: -1.00 -30.55 263.87 -6.48 -37.03 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.59 Total: -0.31 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 0.70 Total: -11.84 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.36 Total: -43.65 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -2.33 Total: -48.14 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 16 Polarization: 48.68 SS G_CDS: -0.58 Total: 48.10 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.55 -6.48 -37.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308258881.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.991 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds