Wall clock time and date at job start Mon Mar 30 2020 03:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46502 * 119.99556 * 2 1 4 4 C 1.50704 * 109.46836 * 274.99432 * 3 2 1 5 5 H 1.07997 * 120.00148 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00064 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99564 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99930 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47243 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46858 * 119.99841 * 8 6 4 11 11 H 1.48497 * 109.46826 * 239.99625 * 8 6 4 12 12 S 1.65590 * 120.00244 * 179.97438 * 2 1 3 13 13 O 1.42098 * 104.28153 * 333.93191 * 12 2 1 14 14 O 1.42107 * 104.27981 * 206.07405 * 12 2 1 15 15 C 1.81402 * 104.44914 * 90.00515 * 12 2 1 16 16 C 1.54037 * 113.81582 * 81.48974 * 15 12 2 17 17 O 1.44573 * 85.38193 * 136.86540 * 16 15 12 18 18 C 1.44177 * 93.32946 * 335.80455 * 17 16 15 19 19 H 1.08994 * 109.47506 * 270.00465 * 1 2 3 20 20 H 1.09000 * 109.47028 * 30.00889 * 1 2 3 21 21 H 1.09005 * 109.46815 * 150.00328 * 1 2 3 22 22 H 1.09001 * 109.47278 * 34.99226 * 3 2 1 23 23 H 1.08996 * 109.47202 * 155.00109 * 3 2 1 24 24 H 0.97001 * 119.99672 * 180.02562 * 7 6 4 25 25 H 1.09002 * 112.99728 * 309.66634 * 15 12 2 26 26 H 1.08998 * 113.86554 * 251.07238 * 16 15 12 27 27 H 1.09005 * 113.86612 * 22.78314 * 16 15 12 28 28 H 1.09001 * 113.86262 * 270.04398 * 18 17 16 29 29 H 1.08999 * 113.98669 * 138.35214 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7656 -1.4155 5 1 1.9283 1.1938 -2.2332 6 6 3.0006 2.9504 -1.6666 7 7 3.5032 3.6470 -0.6708 8 14 3.1784 3.5666 -3.4211 9 1 2.5301 2.6071 -4.3508 10 1 2.5277 4.8954 -3.5473 11 1 4.6192 3.6868 -3.7598 12 16 2.2930 -1.4340 0.0006 13 8 1.3971 -2.3558 0.6062 14 8 3.5396 -1.1188 0.6058 15 6 2.5195 -1.8267 -1.7558 16 6 3.7031 -1.0896 -2.4104 17 8 3.9986 -2.3604 -3.0332 18 6 3.3250 -3.1156 -2.0063 19 1 -0.3634 0.0001 1.0276 20 1 -0.3633 0.8899 -0.5140 21 1 -0.3633 -0.8901 -0.5138 22 1 1.6500 2.0044 0.5893 23 1 3.1857 1.1179 0.4343 24 1 3.9666 4.4807 -0.8474 25 1 1.5937 -1.7681 -2.3281 26 1 3.4041 -0.3112 -3.1124 27 1 4.4626 -0.7585 -1.7021 28 1 3.9693 -3.4015 -1.1748 29 1 2.7259 -3.9433 -2.3858 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308258881.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:44 Heat of formation + Delta-G solvation = -98.716157 kcal Electronic energy + Delta-G solvation = -15765.100227 eV Core-core repulsion = 13009.424945 eV Total energy + Delta-G solvation = -2755.675282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.20689 -38.22893 -37.28824 -36.96718 -34.46887 -31.17160 -29.64403 -27.70509 -26.75738 -24.22884 -22.48363 -19.88332 -18.81343 -18.68111 -18.11217 -17.55799 -17.19334 -16.62026 -16.31303 -15.29966 -15.11327 -14.78957 -14.02362 -13.96229 -13.93575 -13.45531 -13.39301 -13.19087 -12.99969 -12.89306 -12.64864 -12.41752 -12.32924 -11.94640 -11.68466 -11.28174 -10.88614 -10.57476 -9.67857 -8.15740 -6.30051 -0.72418 1.44051 1.47107 1.56122 1.67070 2.38578 2.42548 2.54047 2.88757 3.16433 3.39507 3.82880 3.97291 4.10050 4.15352 4.48637 4.67508 4.73434 4.85011 4.88015 4.92460 5.09685 5.32799 5.49561 5.76084 5.90253 6.10543 6.83217 7.40835 8.92649 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.025932 B = 0.011519 C = 0.009198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.496647 B = 2430.258405 C = 3043.317989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.997 5.997 3 C 0.254 3.746 4 C -0.541 4.541 5 H 0.079 0.921 6 C 0.014 3.986 7 N -0.928 5.928 8 Si 0.952 3.048 9 H -0.254 1.254 10 H -0.284 1.284 11 H -0.283 1.283 12 S 2.614 3.386 13 O -0.982 6.982 14 O -0.987 6.987 15 C -0.658 4.658 16 C 0.076 3.924 17 O -0.385 6.385 18 C 0.066 3.934 19 H 0.052 0.948 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.018 0.982 23 H 0.024 0.976 24 H 0.265 0.735 25 H 0.186 0.814 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 -10.014 -4.109 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.835 5.835 3 C 0.130 3.870 4 C -0.580 4.580 5 H 0.097 0.903 6 C -0.186 4.186 7 N -0.568 5.568 8 Si 0.777 3.223 9 H -0.178 1.178 10 H -0.210 1.210 11 H -0.209 1.209 12 S 2.708 3.292 13 O -0.972 6.972 14 O -0.978 6.978 15 C -0.769 4.769 16 C -0.001 4.001 17 O -0.304 6.304 18 C -0.012 4.012 19 H 0.071 0.929 20 H 0.095 0.905 21 H 0.102 0.898 22 H 0.036 0.964 23 H 0.042 0.958 24 H 0.074 0.926 25 H 0.203 0.797 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.734 -10.389 -3.514 11.585 hybrid contribution 0.012 1.133 -0.933 1.468 sum -3.721 -9.256 -4.447 10.922 Atomic orbital electron populations 1.21506 0.77941 1.03647 1.01951 1.57162 1.15465 1.21507 1.89371 1.18841 0.91234 0.80022 0.96889 1.21897 1.35775 1.06878 0.93495 0.90258 1.25779 0.95055 0.96941 1.00845 1.70072 1.37844 1.15715 1.33140 0.85594 0.77847 0.78588 0.80258 1.17759 1.20953 1.20925 1.04713 0.73155 0.73029 0.78285 1.93509 1.64811 1.63972 1.74946 1.93536 1.46062 1.83412 1.74748 1.33566 1.10611 1.06778 1.25979 1.23692 0.91675 0.88102 0.96630 1.89725 1.79818 1.18127 1.42718 1.23914 0.91983 0.93105 0.92180 0.92943 0.90514 0.89809 0.96378 0.95781 0.92582 0.79671 0.86741 0.89205 0.88638 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.97 10.22 127.77 1.31 4.27 15 2 N -1.00 -38.84 3.10 -543.21 -1.68 -40.53 15 3 C 0.25 12.30 5.39 85.63 0.46 12.76 15 4 C -0.54 -26.41 8.88 25.60 0.23 -26.18 15 5 H 0.08 3.53 7.37 -2.91 -0.02 3.51 15 6 C 0.01 0.70 5.46 84.66 0.46 1.16 15 7 N -0.93 -52.29 13.29 21.45 0.28 -52.01 15 8 Si 0.95 40.17 29.54 68.60 2.03 42.20 15 9 H -0.25 -9.91 7.11 99.48 0.71 -9.20 15 10 H -0.28 -11.96 7.11 99.48 0.71 -11.26 15 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 12 S 2.61 94.44 5.36 -56.49 -0.30 94.14 15 13 O -0.98 -36.39 17.09 -127.65 -2.18 -38.57 15 14 O -0.99 -43.36 15.75 -127.65 -2.01 -45.37 15 15 C -0.66 -18.75 4.75 31.30 0.15 -18.60 15 16 C 0.08 2.51 8.35 72.30 0.60 3.12 15 17 O -0.38 -11.84 12.47 -148.98 -1.86 -13.70 15 18 C 0.07 1.61 8.82 72.30 0.64 2.25 15 19 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.08 2.36 8.07 -2.39 -0.02 2.34 15 21 H 0.08 2.09 7.79 -2.38 -0.02 2.07 15 22 H 0.02 0.94 8.11 -2.39 -0.02 0.92 15 23 H 0.02 1.31 6.81 -2.39 -0.02 1.30 15 24 H 0.27 14.16 8.31 -92.71 -0.77 13.39 15 25 H 0.19 4.23 8.14 -2.39 -0.02 4.21 15 26 H 0.11 3.75 7.65 -2.39 -0.02 3.73 15 27 H 0.09 3.24 7.46 -2.38 -0.02 3.22 15 28 H 0.10 2.12 8.10 -2.39 -0.02 2.10 15 29 H 0.14 2.38 8.14 -2.39 -0.02 2.36 15 Total: -1.00 -65.38 263.87 -0.74 -66.12 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.14 Total: 8.94 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.85 Total: -21.23 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -1.40 Total: -92.54 kcal Atomic # 8 Polarization: -91.58 SS G_CDS: -6.05 Total: -97.63 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 94.44 SS G_CDS: -0.30 Total: 94.14 kcal Total: -65.38 -0.74 -66.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308258881.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.599 kcal (2) G-P(sol) polarization free energy of solvation -65.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds