Wall clock time and date at job start Mon Mar 30 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99610 * 2 1 4 4 H 1.48506 * 109.46911 * 269.99564 * 3 2 1 5 5 H 1.48494 * 109.47351 * 29.99530 * 3 2 1 6 6 H 1.48497 * 109.47072 * 149.99850 * 3 2 1 7 7 C 1.37868 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 359.72570 * 7 2 1 10 10 C 1.50704 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.37905 * 119.91486 * 101.31401 * 10 9 7 12 12 C 1.39826 * 119.82521 * 179.97438 * 11 10 9 13 13 C 1.47171 * 120.17417 * 179.97438 * 12 11 10 14 14 O 1.21247 * 120.00360 * 179.97438 * 13 12 11 15 15 C 1.39878 * 119.65997 * 0.02562 * 12 11 10 16 16 C 1.37869 * 119.81861 * 359.97438 * 15 12 11 17 17 C 1.38376 * 119.91140 * 281.04309 * 10 9 7 18 18 N 1.48010 * 119.83130 * 359.97438 * 17 10 9 19 19 O 1.21798 * 120.00282 * 185.69375 * 18 17 10 20 20 O 1.21805 * 119.99320 * 5.69743 * 18 17 10 21 21 H 0.97006 * 120.00471 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47176 * 300.00263 * 9 7 2 23 23 H 1.09006 * 109.47025 * 60.00341 * 9 7 2 24 24 H 1.08008 * 120.08682 * 359.96165 * 11 10 9 25 25 H 1.08006 * 119.99926 * 359.97438 * 13 12 11 26 26 H 1.07996 * 120.08748 * 180.02562 * 15 12 11 27 27 H 1.08000 * 119.90651 * 180.02562 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0074 10 6 2.2304 -3.6445 0.0059 11 6 2.5044 -4.3166 1.1785 12 6 3.4129 -5.3795 1.1750 13 6 3.7114 -6.1017 2.4221 14 8 4.4993 -7.0232 2.4153 15 6 4.0374 -5.7522 -0.0199 16 6 3.7529 -5.0704 -1.1839 17 6 2.8481 -4.0228 -1.1731 18 7 2.5435 -3.3005 -2.4286 19 8 3.0039 -3.6945 -3.4851 20 8 1.8323 -2.3118 -2.4051 21 1 -0.4851 0.8401 -0.0004 22 1 0.6281 -2.5543 0.9001 23 1 0.6208 -2.5594 -0.8799 24 1 2.0186 -4.0226 2.0973 25 1 3.2285 -5.8108 3.3434 26 1 4.7400 -6.5724 -0.0306 27 1 4.2340 -5.3572 -2.1073 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396030176.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:25 Heat of formation + Delta-G solvation = -11.167032 kcal Electronic energy + Delta-G solvation = -15978.859136 eV Core-core repulsion = 13091.536318 eV Total energy + Delta-G solvation = -2887.322818 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.43503 -39.78391 -38.21211 -35.80817 -33.65420 -31.94022 -31.65346 -27.84119 -26.53040 -23.65992 -23.47820 -22.03983 -20.30236 -18.41453 -17.75971 -16.91327 -16.89066 -16.21642 -15.88345 -14.71232 -14.58922 -14.43756 -14.25928 -13.26828 -12.88847 -12.80336 -12.12375 -11.90190 -11.42804 -10.90235 -10.76035 -10.60388 -10.24564 -10.10072 -10.03971 -9.74507 -9.57148 -9.30133 -8.63264 -8.44711 -6.14859 -4.14737 0.01308 1.28993 1.54992 2.16888 2.41768 3.28479 3.34998 3.36446 3.67349 4.03168 4.37789 4.66577 4.81076 5.02553 5.12002 5.24930 5.26766 5.57916 5.91688 6.05366 6.11005 6.19533 6.61605 7.07602 7.17731 7.27973 7.45147 7.74265 8.07438 8.51050 8.80407 9.44555 10.95632 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.008464 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.999866 B = 3307.347575 C = 4030.859704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.071 3.929 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.496 4.496 8 H 0.051 0.949 9 C 0.036 3.964 10 C 0.010 3.990 11 C -0.074 4.074 12 C -0.154 4.154 13 C 0.387 3.613 14 O -0.459 6.459 15 C -0.093 4.093 16 C -0.075 4.075 17 C -0.019 4.019 18 N 0.017 4.983 19 O -0.238 6.238 20 O -0.069 6.069 21 H 0.265 0.735 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.151 0.849 25 H 0.114 0.886 26 H 0.144 0.856 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.208 -8.875 3.542 10.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.133 4.133 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.534 4.534 8 H 0.070 0.930 9 C -0.001 4.001 10 C 0.009 3.991 11 C -0.093 4.093 12 C -0.155 4.155 13 C 0.246 3.754 14 O -0.332 6.332 15 C -0.112 4.112 16 C -0.094 4.094 17 C -0.103 4.103 18 N 0.531 4.469 19 O -0.429 6.429 20 O -0.302 6.302 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.085 0.915 24 H 0.169 0.831 25 H 0.130 0.870 26 H 0.162 0.838 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.744 -9.747 3.996 11.553 hybrid contribution 0.368 1.243 -0.473 1.380 sum 5.112 -8.503 3.524 10.529 Atomic orbital electron populations 1.69915 1.06007 1.27183 1.48792 1.24851 0.94835 0.99042 0.94535 0.86529 0.79622 0.83017 0.78519 1.20170 1.21031 1.20021 1.20666 0.92327 0.89047 1.51329 0.93033 1.18905 0.92386 0.88428 1.00347 1.20774 0.94231 0.94844 0.89247 1.21436 0.96309 0.93148 0.98397 1.21294 0.99194 0.98440 0.96611 1.24165 0.79150 0.80392 0.91731 1.90511 1.28650 1.25326 1.88672 1.21152 0.99671 0.99789 0.90547 1.20888 0.95394 0.92974 1.00128 1.21275 1.04695 0.98539 0.85795 1.43514 1.00456 1.01009 1.01953 1.94430 1.57157 1.72295 1.19022 1.94745 1.30099 1.12401 1.92987 0.92526 0.94519 0.91531 0.83089 0.87014 0.83835 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.43 13.29 55.43 0.74 -23.69 15 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 15 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.50 -12.84 7.43 -34.45 -0.26 -13.10 15 8 H 0.05 1.35 7.74 -52.48 -0.41 0.95 15 9 C 0.04 0.83 4.40 -29.03 -0.13 0.70 15 10 C 0.01 0.20 5.08 -104.69 -0.53 -0.33 15 11 C -0.07 -1.10 9.41 -39.11 -0.37 -1.47 15 12 C -0.15 -2.02 5.87 -105.06 -0.62 -2.64 15 13 C 0.39 4.18 11.46 34.36 0.39 4.58 15 14 O -0.46 -6.34 17.17 5.59 0.10 -6.24 15 15 C -0.09 -1.26 9.60 -39.10 -0.38 -1.64 15 16 C -0.07 -1.17 9.54 -39.65 -0.38 -1.55 15 17 C -0.02 -0.37 6.82 -79.83 -0.54 -0.92 15 18 N 0.02 0.37 4.45 34.02 0.15 0.52 15 19 O -0.24 -5.12 18.45 -29.46 -0.54 -5.66 15 20 O -0.07 -1.70 14.13 -29.46 -0.42 -2.12 15 21 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 22 H 0.04 0.85 7.98 -51.93 -0.41 0.43 15 23 H 0.07 1.70 6.13 -51.93 -0.32 1.38 15 24 H 0.15 1.84 8.02 -52.48 -0.42 1.42 15 25 H 0.11 0.76 8.06 -52.48 -0.42 0.34 15 26 H 0.14 1.69 7.65 -52.49 -0.40 1.29 15 27 H 0.15 2.06 7.61 -52.49 -0.40 1.66 15 LS Contribution 254.91 15.07 3.84 3.84 Total: -1.00 -30.10 254.91 -5.98 -36.08 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -1.92 Total: -3.96 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -2.90 Total: -14.56 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.89 Total: -23.17 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.86 Total: -14.02 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.10 -5.98 -36.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396030176.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.910 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds