Wall clock time and date at job start Mon Mar 30 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99610 * 2 1 4 4 H 1.48506 * 109.46911 * 269.99564 * 3 2 1 5 5 H 1.48494 * 109.47351 * 29.99530 * 3 2 1 6 6 H 1.48497 * 109.47072 * 149.99850 * 3 2 1 7 7 C 1.37868 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 359.72570 * 7 2 1 10 10 C 1.50704 * 109.47506 * 179.97438 * 9 7 2 11 11 C 1.37905 * 119.91486 * 101.31401 * 10 9 7 12 12 C 1.39826 * 119.82521 * 179.97438 * 11 10 9 13 13 C 1.47171 * 120.17417 * 179.97438 * 12 11 10 14 14 O 1.21247 * 120.00360 * 179.97438 * 13 12 11 15 15 C 1.39878 * 119.65997 * 0.02562 * 12 11 10 16 16 C 1.37869 * 119.81861 * 359.97438 * 15 12 11 17 17 C 1.38376 * 119.91140 * 281.04309 * 10 9 7 18 18 N 1.48010 * 119.83130 * 359.97438 * 17 10 9 19 19 O 1.21798 * 120.00282 * 185.69375 * 18 17 10 20 20 O 1.21805 * 119.99320 * 5.69743 * 18 17 10 21 21 H 0.97006 * 120.00471 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47176 * 300.00263 * 9 7 2 23 23 H 1.09006 * 109.47025 * 60.00341 * 9 7 2 24 24 H 1.08008 * 120.08682 * 359.96165 * 11 10 9 25 25 H 1.08006 * 119.99926 * 359.97438 * 13 12 11 26 26 H 1.07996 * 120.08748 * 180.02562 * 15 12 11 27 27 H 1.08000 * 119.90651 * 180.02562 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0074 10 6 2.2304 -3.6445 0.0059 11 6 2.5044 -4.3166 1.1785 12 6 3.4129 -5.3795 1.1750 13 6 3.7114 -6.1017 2.4221 14 8 4.4993 -7.0232 2.4153 15 6 4.0374 -5.7522 -0.0199 16 6 3.7529 -5.0704 -1.1839 17 6 2.8481 -4.0228 -1.1731 18 7 2.5435 -3.3005 -2.4286 19 8 3.0039 -3.6945 -3.4851 20 8 1.8323 -2.3118 -2.4051 21 1 -0.4851 0.8401 -0.0004 22 1 0.6281 -2.5543 0.9001 23 1 0.6208 -2.5594 -0.8799 24 1 2.0186 -4.0226 2.0973 25 1 3.2285 -5.8108 3.3434 26 1 4.7400 -6.5724 -0.0306 27 1 4.2340 -5.3572 -2.1073 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396030176.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:25 Heat of formation + Delta-G solvation = -29.074520 kcal Electronic energy + Delta-G solvation = -15979.635663 eV Core-core repulsion = 13091.536318 eV Total energy + Delta-G solvation = -2888.099345 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.07797 -40.95137 -39.38134 -37.51807 -35.42970 -33.42264 -33.08947 -29.50641 -28.01259 -25.32362 -24.81780 -23.42640 -21.64762 -19.93803 -19.34835 -18.71016 -18.19147 -17.84947 -17.05490 -16.50058 -15.78892 -15.53787 -15.44437 -14.55822 -14.47616 -14.27521 -13.69678 -13.63913 -12.96919 -12.76538 -12.46605 -12.35860 -12.01963 -11.81222 -11.61361 -11.44230 -10.93286 -10.55694 -10.48958 -10.01733 -8.15557 -6.21458 -1.34722 0.03827 0.09630 0.63276 1.28729 1.40765 1.45361 1.51253 2.39607 2.51609 3.11820 3.21149 3.45076 3.51458 3.86042 3.93531 4.28741 4.37314 4.71041 4.78868 4.82327 4.96132 5.24020 5.32483 5.53149 5.64310 5.73916 6.13910 6.30889 6.71886 6.83654 7.42187 8.95782 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.024599 B = 0.008464 C = 0.006945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.999866 B = 3307.347575 C = 4030.859704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.949 3.051 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.041 0.959 9 C 0.045 3.955 10 C -0.014 4.014 11 C -0.066 4.066 12 C -0.136 4.136 13 C 0.402 3.598 14 O -0.483 6.483 15 C -0.080 4.080 16 C -0.070 4.070 17 C -0.043 4.043 18 N 0.021 4.979 19 O -0.202 6.202 20 O -0.153 6.153 21 H 0.264 0.736 22 H 0.030 0.970 23 H 0.032 0.968 24 H 0.180 0.820 25 H 0.169 0.831 26 H 0.172 0.828 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -10.921 5.232 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.178 4.178 3 Si 0.775 3.225 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.060 0.940 9 C 0.008 3.992 10 C -0.015 4.015 11 C -0.084 4.084 12 C -0.137 4.137 13 C 0.262 3.738 14 O -0.356 6.356 15 C -0.099 4.099 16 C -0.089 4.089 17 C -0.127 4.127 18 N 0.531 4.469 19 O -0.408 6.408 20 O -0.368 6.368 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.197 0.803 25 H 0.185 0.815 26 H 0.189 0.811 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 6.623 -11.674 5.772 14.611 hybrid contribution -0.058 1.549 -1.039 1.866 sum 6.565 -10.125 4.734 12.962 Atomic orbital electron populations 1.70014 1.07228 1.27680 1.50932 1.25560 0.95529 1.02036 0.94643 0.85693 0.78934 0.79861 0.78024 1.20963 1.20147 1.19078 1.20846 0.91891 0.90603 1.50496 0.94041 1.18535 0.92825 0.89522 0.98306 1.20561 0.94766 0.95040 0.91151 1.21644 0.96307 0.92788 0.97658 1.21742 0.96993 0.97029 0.97975 1.24745 0.78309 0.78963 0.91821 1.90536 1.29918 1.26417 1.88746 1.21570 0.99072 0.99418 0.89831 1.21152 0.94217 0.91636 1.01902 1.21518 1.06943 1.00049 0.84197 1.44017 0.99275 1.00627 1.02950 1.94360 1.55012 1.71154 1.20274 1.94788 1.33480 1.14935 1.93602 0.92650 0.95196 0.95044 0.80268 0.81532 0.81078 0.81760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.20 13.29 21.44 0.28 -52.91 15 2 C 0.02 1.20 5.46 84.65 0.46 1.66 15 3 Si 0.95 43.76 29.54 68.60 2.03 45.79 15 4 H -0.28 -13.28 7.11 99.48 0.71 -12.57 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.50 -26.86 7.43 25.60 0.19 -26.67 15 8 H 0.04 2.24 7.74 -2.91 -0.02 2.22 15 9 C 0.04 2.18 4.40 29.10 0.13 2.31 15 10 C -0.01 -0.52 5.08 -19.91 -0.10 -0.63 15 11 C -0.07 -1.75 9.41 22.58 0.21 -1.54 15 12 C -0.14 -2.95 5.87 -20.15 -0.12 -3.07 15 13 C 0.40 6.39 11.46 70.17 0.80 7.19 15 14 O -0.48 -10.87 17.17 -2.93 -0.05 -10.92 15 15 C -0.08 -1.84 9.60 22.58 0.22 -1.63 15 16 C -0.07 -2.00 9.54 22.23 0.21 -1.79 15 17 C -0.04 -1.65 6.82 36.46 0.25 -1.40 15 18 N 0.02 0.95 4.45 -46.28 -0.21 0.74 15 19 O -0.20 -8.62 18.45 18.89 0.35 -8.27 15 20 O -0.15 -8.02 14.13 18.88 0.27 -7.76 15 21 H 0.26 14.52 8.31 -92.70 -0.77 13.74 15 22 H 0.03 1.44 7.98 -2.39 -0.02 1.42 15 23 H 0.03 1.74 6.13 -2.38 -0.01 1.72 15 24 H 0.18 3.70 8.02 -2.91 -0.02 3.68 15 25 H 0.17 1.07 8.06 -2.91 -0.02 1.04 15 26 H 0.17 3.11 7.65 -2.91 -0.02 3.09 15 27 H 0.16 4.07 7.61 -2.91 -0.02 4.05 15 Total: -1.00 -69.19 254.91 6.13 -63.06 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: 1.20 Total: -4.17 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 2.25 Total: -25.57 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.08 Total: -52.17 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: 0.56 Total: -26.94 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -69.19 6.13 -63.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396030176.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.986 kcal (2) G-P(sol) polarization free energy of solvation -69.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds