Wall clock time and date at job start Mon Mar 30 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.33500 * 2 1 4 4 C 1.54476 * 110.36914 * 122.25111 * 2 1 3 5 5 C 1.54511 * 104.06390 * 142.81185 * 4 2 1 6 6 H 1.08992 * 110.51442 * 118.78315 * 5 4 2 7 7 N 1.46506 * 110.51058 * 241.35685 * 5 4 2 8 8 S 1.65597 * 119.99791 * 215.00029 * 7 5 4 9 9 O 1.42102 * 106.40060 * 178.54054 * 8 7 5 10 10 O 1.42101 * 106.40207 * 311.45359 * 8 7 5 11 11 C 1.76196 * 107.22133 * 64.99502 * 8 7 5 12 12 H 1.08005 * 119.99999 * 0.02562 * 11 8 7 13 13 C 1.37876 * 120.00092 * 180.02562 * 11 8 7 14 14 N 1.31514 * 120.00337 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 120.00115 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.46857 * 60.00164 * 15 13 11 17 17 H 1.48500 * 109.46964 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47025 * 300.00219 * 15 13 11 19 19 C 1.54481 * 104.06050 * 359.97438 * 5 4 2 20 20 O 1.44423 * 104.80386 * 336.02296 * 19 5 4 21 21 H 1.09000 * 109.47276 * 297.75034 * 1 2 3 22 22 H 1.09004 * 109.46880 * 57.75142 * 1 2 3 23 23 H 1.08997 * 109.47115 * 177.74441 * 1 2 3 24 24 H 1.09001 * 110.51538 * 24.16410 * 4 2 1 25 25 H 1.09003 * 110.51208 * 261.45421 * 4 2 1 26 26 H 0.96995 * 120.00050 * 34.72114 * 7 5 4 27 27 H 0.96995 * 120.00364 * 180.02562 * 14 13 11 28 28 H 1.09003 * 110.37108 * 94.85441 * 19 5 4 29 29 H 1.09000 * 110.36982 * 217.19237 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0677 -0.7728 1.2247 5 6 3.3178 -1.5050 0.6875 6 1 4.2105 -1.1779 1.2204 7 7 3.1534 -2.9560 0.8062 8 16 4.4607 -3.9117 1.1520 9 8 3.9734 -5.2441 1.2330 10 8 5.4945 -3.5152 0.2614 11 6 5.0071 -3.4824 2.7712 12 1 4.4911 -2.7153 3.3295 13 6 6.0934 -4.1257 3.3254 14 7 6.7220 -5.0595 2.6454 15 14 6.6722 -3.6711 5.0423 16 1 5.5765 -3.9145 6.0147 17 1 7.8484 -4.5021 5.4044 18 1 7.0514 -2.2357 5.0729 19 6 3.3870 -1.0884 -0.7985 20 8 2.0324 -0.7256 -1.1435 21 1 -0.3634 0.4785 0.9095 22 1 -0.3633 0.5484 -0.8692 23 1 -0.3633 -1.0268 -0.0404 24 1 1.3275 -1.4903 1.5788 25 1 2.3429 -0.0819 2.0216 26 1 2.2781 -3.3563 0.6863 27 1 7.4860 -5.5124 3.0354 28 1 4.0521 -0.2337 -0.9223 29 1 3.7238 -1.9244 -1.4115 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401479627.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:00 Heat of formation + Delta-G solvation = -146.324710 kcal Electronic energy + Delta-G solvation = -15380.114919 eV Core-core repulsion = 12622.375176 eV Total energy + Delta-G solvation = -2757.739743 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37129 -35.22535 -34.14859 -33.95357 -33.08955 -31.96288 -28.83380 -26.16019 -25.75121 -21.51401 -20.82132 -19.09511 -17.44895 -16.54449 -15.99800 -15.88622 -15.28901 -14.87231 -14.18300 -13.97123 -13.37109 -13.11281 -12.55922 -12.37062 -12.03295 -11.67787 -11.40279 -11.31272 -11.22337 -11.10157 -10.72828 -10.64489 -10.30432 -10.20308 -10.18336 -9.78456 -9.25892 -8.99064 -8.50326 -6.71923 -5.34731 2.32031 3.06544 3.11477 3.16603 4.03706 4.06618 4.60390 4.65260 4.77955 4.95286 5.12329 5.32305 5.41332 5.49166 5.62050 5.72210 5.79480 5.93338 6.01200 6.05008 6.17863 6.26442 6.51435 6.78031 7.08433 7.30133 7.87586 7.95068 8.86575 10.22297 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.038032 B = 0.008151 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.040736 B = 3434.491884 C = 3783.209986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.067 0.933 4 C -0.159 4.159 5 C 0.130 3.870 6 H 0.105 0.895 7 N -1.126 6.126 8 S 2.713 3.287 9 O -1.006 7.006 10 O -1.006 7.006 11 C -1.023 5.023 12 H 0.101 0.899 13 C 0.133 3.867 14 N -0.844 5.844 15 Si 0.921 3.079 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.264 1.264 19 C 0.030 3.970 20 O -0.374 6.374 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.403 0.597 27 H 0.292 0.708 28 H 0.066 0.934 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 9.921 -0.937 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.085 0.915 4 C -0.198 4.198 5 C 0.021 3.979 6 H 0.123 0.877 7 N -0.879 5.879 8 S 2.813 3.187 9 O -0.997 6.997 10 O -0.996 6.996 11 C -1.156 5.156 12 H 0.120 0.880 13 C -0.085 4.085 14 N -0.474 5.474 15 Si 0.745 3.255 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.189 1.189 19 C -0.048 4.048 20 O -0.294 6.294 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.102 0.898 26 H 0.234 0.766 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.484 9.158 -1.747 11.955 hybrid contribution 0.080 0.425 1.636 1.693 sum -7.403 9.583 -0.110 12.110 Atomic orbital electron populations 1.21794 0.93533 1.02927 1.01997 1.22986 0.95116 0.95382 0.85670 0.91490 1.23387 0.98097 1.00106 0.98256 1.21877 0.98859 0.81629 0.95537 0.87690 1.56108 1.26978 1.15400 1.89383 1.00489 0.70730 0.71529 0.75979 1.93377 1.80627 1.36466 1.89200 1.93364 1.55609 1.83223 1.67381 1.30537 1.25509 1.33923 1.25640 0.88040 1.24744 0.93060 0.91209 0.99511 1.69886 1.18974 1.20068 1.38456 0.86197 0.78528 0.79416 0.81381 1.18894 1.20118 1.18875 1.24038 0.83729 1.00547 0.96521 1.89120 1.27739 1.74414 1.38091 0.91348 0.92180 0.91729 0.89623 0.89848 0.76550 0.89799 0.91604 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.52 37.16 0.35 -1.13 15 2 C 0.07 0.82 3.92 -25.96 -0.10 0.72 15 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 4 C -0.16 -2.10 6.39 -25.16 -0.16 -2.26 15 5 C 0.13 2.20 3.67 -66.36 -0.24 1.95 15 6 H 0.11 1.80 7.96 -51.93 -0.41 1.39 15 7 N -1.13 -22.11 5.46 -3.55 -0.02 -22.13 15 8 S 2.71 70.87 4.94 -107.50 -0.53 70.34 15 9 O -1.01 -29.46 18.02 -57.17 -1.03 -30.49 15 10 O -1.01 -28.72 17.78 -57.17 -1.02 -29.74 15 11 C -1.02 -27.58 9.67 30.60 0.30 -27.28 15 12 H 0.10 2.47 7.81 -52.48 -0.41 2.06 15 13 C 0.13 3.67 5.46 -17.82 -0.10 3.57 15 14 N -0.84 -24.67 13.19 55.43 0.73 -23.94 15 15 Si 0.92 20.27 29.54 -169.99 -5.02 15.25 15 16 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 17 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 18 H -0.26 -5.57 7.11 56.52 0.40 -5.17 15 19 C 0.03 0.49 7.35 37.93 0.28 0.77 15 20 O -0.37 -5.84 11.34 -35.23 -0.40 -6.24 15 21 H 0.07 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.06 0.58 8.14 -51.93 -0.42 0.15 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.09 1.10 7.55 -51.93 -0.39 0.71 15 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 15 26 H 0.40 7.06 8.72 -34.47 -0.30 6.76 15 27 H 0.29 7.67 8.31 -40.82 -0.34 7.33 15 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 15 29 H 0.10 1.80 8.06 -51.93 -0.42 1.38 15 LS Contribution 264.85 15.07 3.99 3.99 Total: -1.00 -34.38 264.85 -6.58 -40.95 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -3.61 Total: 5.68 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 0.32 Total: -23.67 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.71 Total: -46.07 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -2.45 Total: -66.46 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 70.87 SS G_CDS: -0.53 Total: 70.34 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -34.38 -6.58 -40.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401479627.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.371 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds