Wall clock time and date at job start Mon Mar 30 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35736 * 116.99922 * 2 1 4 4 C 1.37749 * 119.97898 * 359.72879 * 3 2 1 5 5 C 1.40859 * 120.04391 * 179.77233 * 4 3 2 6 6 C 1.41116 * 120.00095 * 180.27566 * 5 4 3 7 7 H 1.08006 * 119.99838 * 25.02416 * 6 5 4 8 8 C 1.40118 * 120.00310 * 205.03541 * 6 5 4 9 9 N 1.30707 * 120.00031 * 17.96244 * 8 6 5 10 10 Si 1.86798 * 119.99787 * 197.97183 * 8 6 5 11 11 H 1.48506 * 109.47323 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47410 * 119.99542 * 10 8 6 13 13 H 1.48508 * 109.46936 * 239.99365 * 10 8 6 14 14 C 1.40728 * 120.00370 * 0.47769 * 5 4 3 15 15 C 1.38068 * 119.95395 * 359.77739 * 14 5 4 16 16 S 1.76193 * 120.02860 * 179.97438 * 15 14 5 17 17 C 1.40663 * 119.97560 * 180.02562 * 3 2 1 18 18 C 1.43200 * 120.00099 * 359.97438 * 17 3 2 19 19 N 3.52811 * 165.69391 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47069 * 299.99484 * 1 2 3 21 21 H 1.09004 * 109.47179 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47119 * 59.99412 * 1 2 3 23 23 H 1.07998 * 119.97214 * 359.97438 * 4 3 2 24 24 H 0.97001 * 120.00267 * 180.02562 * 9 8 6 25 25 H 1.08004 * 120.02333 * 179.79292 * 14 5 4 26 26 H 1.34497 * 103.00493 * 270.02064 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2946 2.3644 -0.0056 5 6 1.9326 3.6202 -0.0008 6 6 1.1627 4.8028 -0.0007 7 1 0.1565 4.7921 0.3916 8 6 1.7034 5.9910 -0.5098 9 7 2.7512 5.9504 -1.2902 10 14 0.9270 7.6328 -0.0731 11 1 -0.2390 7.4075 0.8185 12 1 1.9257 8.4833 0.6228 13 1 0.4766 8.3131 -1.3141 14 6 3.3379 3.6956 -0.0004 15 6 4.0903 2.5380 0.0000 16 16 5.8499 2.6301 -0.0001 17 6 3.4500 1.2825 -0.0005 18 6 4.2294 0.0812 -0.0005 19 7 4.8477 -0.8718 0.0004 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 0.2162 2.3069 -0.0105 24 1 3.1258 6.7730 -1.6424 25 1 3.8274 4.6583 0.0000 26 1 6.1520 2.6459 -1.3106 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575646858.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:01 Heat of formation + Delta-G solvation = 3.383073 kcal Electronic energy + Delta-G solvation = -13702.005186 eV Core-core repulsion = 11258.066179 eV Total energy + Delta-G solvation = -2443.939007 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18037 -36.73307 -35.42022 -33.79865 -30.60555 -29.16242 -27.00573 -26.04654 -22.12020 -21.35388 -18.59380 -17.80982 -16.65636 -15.88079 -15.80377 -15.13939 -15.05197 -13.83235 -13.59123 -13.28868 -12.90269 -12.59855 -11.99428 -11.85806 -11.57682 -11.44291 -11.43412 -11.01862 -10.88384 -10.79564 -10.36301 -10.19019 -9.72060 -9.44940 -7.93522 -7.48336 -7.35697 -7.26473 -4.87442 1.74129 2.32088 2.63332 2.80129 2.85981 2.90773 3.47811 3.58739 3.83614 3.86299 3.99600 4.49693 5.20193 5.24115 5.52289 5.60771 5.81068 6.27407 6.37043 6.51483 6.55055 6.74794 6.99436 7.33314 7.41258 7.64505 7.89419 8.09287 8.33069 8.40884 8.70476 9.64002 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.009320 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.451691 B = 3003.557418 C = 4071.048511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.326 6.326 3 C 0.202 3.798 4 C -0.305 4.305 5 C 0.143 3.857 6 C -0.425 4.425 7 H 0.092 0.908 8 C 0.072 3.928 9 N -0.763 5.763 10 Si 0.918 3.082 11 H -0.255 1.255 12 H -0.265 1.265 13 H -0.270 1.270 14 C -0.124 4.124 15 C -0.014 4.014 16 S -0.154 6.154 17 C -0.178 4.178 18 C 0.299 3.701 19 N -0.492 5.492 20 H 0.054 0.946 21 H 0.088 0.912 22 H 0.053 0.947 23 H 0.115 0.885 24 H 0.292 0.708 25 H 0.140 0.860 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.425 1.897 0.973 4.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.239 6.239 3 C 0.153 3.847 4 C -0.325 4.325 5 C 0.137 3.863 6 C -0.452 4.452 7 H 0.110 0.890 8 C -0.151 4.151 9 N -0.385 5.385 10 Si 0.741 3.259 11 H -0.178 1.178 12 H -0.190 1.190 13 H -0.195 1.195 14 C -0.146 4.146 15 C -0.129 4.129 16 S 0.004 5.996 17 C -0.187 4.187 18 C -0.012 4.012 19 N -0.171 5.171 20 H 0.072 0.928 21 H 0.106 0.894 22 H 0.072 0.928 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.157 0.843 26 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.281 0.434 1.041 2.544 hybrid contribution -1.667 1.279 -1.043 2.346 sum -3.948 1.713 -0.002 4.304 Atomic orbital electron populations 1.22912 0.79219 1.02562 1.01503 1.85964 1.20792 1.28350 1.88788 1.18490 0.89729 0.83619 0.92911 1.20956 0.98396 0.91358 1.21838 1.17469 0.91434 0.91848 0.85554 1.19897 1.01133 0.92160 1.32031 0.88976 1.26170 0.94279 1.02293 0.92342 1.69728 1.17851 1.31729 1.19157 0.86072 0.80427 0.79720 0.79695 1.17843 1.19008 1.19520 1.21751 0.93629 0.96324 1.02916 1.20483 0.92301 0.93687 1.06386 1.85480 1.04320 1.98246 1.11576 1.14869 0.87672 0.86497 1.29698 1.25404 0.91993 0.92137 0.91643 1.80987 1.10126 1.11606 1.14397 0.92775 0.89395 0.92793 0.86739 0.89636 0.84292 0.96516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 15 2 O -0.33 -6.42 9.92 -18.91 -0.19 -6.61 15 3 C 0.20 4.35 6.68 -38.85 -0.26 4.09 15 4 C -0.30 -6.47 8.75 -38.77 -0.34 -6.81 15 5 C 0.14 3.27 5.57 -106.87 -0.60 2.67 15 6 C -0.43 -9.36 9.03 -37.79 -0.34 -9.70 15 7 H 0.09 1.90 7.91 -52.48 -0.42 1.49 15 8 C 0.07 1.51 5.12 -17.33 -0.09 1.43 15 9 N -0.76 -16.71 10.96 55.56 0.61 -16.10 15 10 Si 0.92 15.60 29.60 -169.99 -5.03 10.57 15 11 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 12 H -0.27 -4.50 7.11 56.52 0.40 -4.10 15 13 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 14 C -0.12 -2.85 8.40 -38.70 -0.33 -3.18 15 15 C -0.01 -0.32 6.14 -38.62 -0.24 -0.55 15 16 S -0.15 -3.13 24.74 -107.50 -2.66 -5.79 15 17 C -0.18 -4.05 5.80 -106.03 -0.62 -4.67 15 18 C 0.30 6.93 13.78 -22.47 -0.31 6.62 15 19 N -0.49 -11.62 18.54 41.84 0.78 -10.85 15 20 H 0.05 0.72 7.66 -51.93 -0.40 0.32 15 21 H 0.09 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.05 0.74 7.64 -51.93 -0.40 0.34 15 23 H 0.11 2.17 6.25 -52.49 -0.33 1.84 15 24 H 0.29 5.74 8.29 -40.82 -0.34 5.40 15 25 H 0.14 3.25 6.15 -52.48 -0.32 2.92 15 26 H 0.07 1.38 9.07 97.61 0.89 2.26 15 LS Contribution 255.28 15.07 3.85 3.85 Total: -1.00 -25.24 255.28 -5.30 -30.53 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -0.53 Total: 3.01 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -2.12 Total: -8.62 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 1.38 Total: -26.94 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.19 Total: -6.61 kcal Atomic # 14 Polarization: 15.60 SS G_CDS: -5.03 Total: 10.57 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.66 Total: -5.79 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -25.24 -5.30 -30.53 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646858.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.918 kcal (2) G-P(sol) polarization free energy of solvation -25.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds