Wall clock time and date at job start Mon Mar 30 2020 03:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35736 * 116.99922 * 2 1 4 4 C 1.37749 * 119.97898 * 359.72879 * 3 2 1 5 5 C 1.40859 * 120.04391 * 179.77233 * 4 3 2 6 6 C 1.41116 * 120.00095 * 180.27566 * 5 4 3 7 7 H 1.08006 * 119.99838 * 25.02416 * 6 5 4 8 8 C 1.40118 * 120.00310 * 205.03541 * 6 5 4 9 9 N 1.30707 * 120.00031 * 17.96244 * 8 6 5 10 10 Si 1.86798 * 119.99787 * 197.97183 * 8 6 5 11 11 H 1.48506 * 109.47323 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47410 * 119.99542 * 10 8 6 13 13 H 1.48508 * 109.46936 * 239.99365 * 10 8 6 14 14 C 1.40728 * 120.00370 * 0.47769 * 5 4 3 15 15 C 1.38068 * 119.95395 * 359.77739 * 14 5 4 16 16 S 1.76193 * 120.02860 * 179.97438 * 15 14 5 17 17 C 1.40663 * 119.97560 * 180.02562 * 3 2 1 18 18 C 1.43200 * 120.00099 * 359.97438 * 17 3 2 19 19 N 3.52811 * 165.69391 * 179.97438 * 2 1 3 20 20 H 1.08999 * 109.47069 * 299.99484 * 1 2 3 21 21 H 1.09004 * 109.47179 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47119 * 59.99412 * 1 2 3 23 23 H 1.07998 * 119.97214 * 359.97438 * 4 3 2 24 24 H 0.97001 * 120.00267 * 180.02562 * 9 8 6 25 25 H 1.08004 * 120.02333 * 179.79292 * 14 5 4 26 26 H 1.34497 * 103.00493 * 270.02064 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2946 2.3644 -0.0056 5 6 1.9326 3.6202 -0.0008 6 6 1.1627 4.8028 -0.0007 7 1 0.1565 4.7921 0.3916 8 6 1.7034 5.9910 -0.5098 9 7 2.7512 5.9504 -1.2902 10 14 0.9270 7.6328 -0.0731 11 1 -0.2390 7.4075 0.8185 12 1 1.9257 8.4833 0.6228 13 1 0.4766 8.3131 -1.3141 14 6 3.3379 3.6956 -0.0004 15 6 4.0903 2.5380 0.0000 16 16 5.8499 2.6301 -0.0001 17 6 3.4500 1.2825 -0.0005 18 6 4.2294 0.0812 -0.0005 19 7 4.8477 -0.8718 0.0004 20 1 -0.3633 0.5137 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 0.2162 2.3069 -0.0105 24 1 3.1258 6.7730 -1.6424 25 1 3.8274 4.6583 0.0000 26 1 6.1520 2.6459 -1.3106 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575646858.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:01 Heat of formation + Delta-G solvation = -9.741467 kcal Electronic energy + Delta-G solvation = -13702.574309 eV Core-core repulsion = 11258.066179 eV Total energy + Delta-G solvation = -2444.508130 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.74719 -38.32453 -37.20345 -35.45438 -32.28905 -30.77796 -28.42192 -27.60274 -23.79974 -22.97869 -20.19202 -19.50614 -18.29424 -17.48359 -17.33194 -16.60425 -16.53269 -15.39880 -15.21357 -14.82631 -14.52915 -14.25264 -13.62990 -13.50868 -13.10987 -13.05269 -12.86308 -12.58189 -12.41628 -12.16810 -11.89349 -11.72405 -11.34672 -11.03645 -9.63729 -9.10910 -9.01237 -8.86847 -6.57218 0.04562 0.66384 0.95580 1.42675 1.48079 1.62139 1.85692 2.03371 2.14999 2.21083 2.57831 2.78318 3.48056 3.51451 4.40965 4.50949 4.60848 4.75807 4.81931 4.86427 4.89592 5.10939 5.30377 5.63027 5.76189 5.94301 6.27370 6.46761 6.64881 6.75024 6.93682 8.07237 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.024164 B = 0.009320 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.451691 B = 3003.557418 C = 4071.048511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.342 6.342 3 C 0.205 3.795 4 C -0.308 4.308 5 C 0.120 3.880 6 C -0.439 4.439 7 H 0.104 0.896 8 C 0.038 3.962 9 N -0.789 5.789 10 Si 0.989 3.011 11 H -0.249 1.249 12 H -0.264 1.264 13 H -0.266 1.266 14 C -0.138 4.138 15 C -0.022 4.022 16 S -0.143 6.143 17 C -0.204 4.204 18 C 0.305 3.695 19 N -0.509 5.509 20 H 0.065 0.935 21 H 0.119 0.881 22 H 0.061 0.939 23 H 0.136 0.864 24 H 0.301 0.699 25 H 0.130 0.870 26 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.784 2.722 1.124 6.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.255 6.255 3 C 0.155 3.845 4 C -0.329 4.329 5 C 0.114 3.886 6 C -0.465 4.465 7 H 0.122 0.878 8 C -0.183 4.183 9 N -0.412 5.412 10 Si 0.808 3.192 11 H -0.172 1.172 12 H -0.189 1.189 13 H -0.191 1.191 14 C -0.160 4.160 15 C -0.137 4.137 16 S 0.015 5.985 17 C -0.213 4.213 18 C -0.005 4.005 19 N -0.189 5.189 20 H 0.084 0.916 21 H 0.137 0.863 22 H 0.080 0.920 23 H 0.154 0.846 24 H 0.113 0.887 25 H 0.148 0.852 26 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.647 1.233 1.190 4.029 hybrid contribution -1.301 1.033 -1.125 2.007 sum -4.948 2.266 0.064 5.443 Atomic orbital electron populations 1.23290 0.76413 1.05011 1.02397 1.85948 1.23687 1.27488 1.88392 1.18542 0.89522 0.84456 0.91933 1.21122 0.99412 0.90674 1.21643 1.17809 0.91684 0.93001 0.86087 1.20252 1.01742 0.92618 1.31901 0.87832 1.26997 0.94436 1.05253 0.91598 1.69759 1.18698 1.33233 1.19462 0.85024 0.79550 0.75181 0.79427 1.17210 1.18863 1.19090 1.21699 0.94047 0.96019 1.04229 1.20632 0.93402 0.93607 1.06042 1.85334 1.02948 1.98236 1.11999 1.15050 0.88521 0.86324 1.31422 1.25519 0.91706 0.92088 0.91208 1.80971 1.10536 1.11985 1.15378 0.91647 0.86303 0.92040 0.84647 0.88709 0.85208 0.95910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 9.81 113.37 1.11 1.72 15 2 O -0.34 -13.05 9.92 -90.59 -0.90 -13.95 15 3 C 0.21 8.75 6.68 22.75 0.15 8.90 15 4 C -0.31 -12.81 8.75 22.80 0.20 -12.61 15 5 C 0.12 5.47 5.57 -21.32 -0.12 5.35 15 6 C -0.44 -18.87 9.03 23.43 0.21 -18.66 15 7 H 0.10 4.10 7.91 -2.91 -0.02 4.07 15 8 C 0.04 1.55 5.12 85.32 0.44 1.99 15 9 N -0.79 -34.14 10.96 21.85 0.24 -33.90 15 10 Si 0.99 30.47 29.60 68.60 2.03 32.50 15 11 H -0.25 -7.39 7.11 99.48 0.71 -6.68 15 12 H -0.26 -8.05 7.11 99.48 0.71 -7.34 15 13 H -0.27 -8.01 7.11 99.48 0.71 -7.30 15 14 C -0.14 -6.38 8.40 22.84 0.19 -6.19 15 15 C -0.02 -1.01 6.14 22.89 0.14 -0.87 15 16 S -0.14 -5.79 24.74 -56.49 -1.40 -7.19 15 17 C -0.20 -9.29 5.80 -20.78 -0.12 -9.41 15 18 C 0.31 14.13 13.78 88.33 1.22 15.34 15 19 N -0.51 -23.96 18.54 19.00 0.35 -23.61 15 20 H 0.06 1.58 7.66 -2.39 -0.02 1.57 15 21 H 0.12 2.38 8.14 -2.38 -0.02 2.36 15 22 H 0.06 1.53 7.64 -2.39 -0.02 1.52 15 23 H 0.14 4.89 6.25 -2.91 -0.02 4.87 15 24 H 0.30 11.61 8.29 -92.71 -0.77 10.84 15 25 H 0.13 6.15 6.15 -2.91 -0.02 6.14 15 26 H 0.08 2.97 9.07 73.35 0.67 3.64 15 Total: -1.00 -52.57 255.28 5.65 -46.92 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.90 Total: 13.68 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: 3.42 Total: -14.45 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: 0.59 Total: -57.51 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -0.90 Total: -13.95 kcal Atomic # 14 Polarization: 30.47 SS G_CDS: 2.03 Total: 32.50 kcal Atomic # 16 Polarization: -5.79 SS G_CDS: -1.40 Total: -7.19 kcal Total: -52.57 5.65 -46.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575646858.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.174 kcal (2) G-P(sol) polarization free energy of solvation -52.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds