Wall clock time and date at job start Mon Mar 30 2020 03:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35790 * 116.99842 * 2 1 4 4 C 1.36436 * 119.53450 * 359.97438 * 3 2 1 5 5 C 1.40903 * 120.04692 * 179.97438 * 4 3 2 6 6 C 1.40555 * 120.40085 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00078 * 154.16919 * 6 5 4 8 8 C 1.40139 * 120.00037 * 334.17071 * 6 5 4 9 9 N 1.30743 * 120.00010 * 343.52819 * 8 6 5 10 10 Si 1.86795 * 119.99926 * 163.52866 * 8 6 5 11 11 H 1.48501 * 109.47311 * 90.00285 * 10 8 6 12 12 H 1.48506 * 109.47354 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.47231 * 329.99906 * 10 8 6 14 14 C 1.46366 * 119.19394 * 0.04193 * 5 4 3 15 15 S 1.76204 * 120.44892 * 179.97438 * 14 5 4 16 16 C 1.38464 * 119.10459 * 359.97438 * 14 5 4 17 17 C 1.39644 * 119.89001 * 359.97438 * 16 14 5 18 18 C 1.43202 * 119.58542 * 179.97438 * 17 16 14 19 19 N 3.50596 * 165.07703 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46865 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47556 * 299.99881 * 1 2 3 22 22 H 1.08999 * 109.47381 * 59.99958 * 1 2 3 23 23 H 1.07999 * 119.97267 * 359.97438 * 4 3 2 24 24 H 0.97001 * 120.00361 * 185.04275 * 9 8 6 25 25 H 1.40997 * 100.00177 * 269.97897 * 15 14 5 26 26 H 1.07994 * 120.05287 * 180.27762 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2930 2.3481 -0.0005 5 6 1.9214 3.6092 0.0000 6 6 1.1536 4.7865 -0.0011 7 1 1.5632 5.6987 0.4068 8 6 -0.1436 4.7765 -0.5314 9 7 -0.5265 3.7937 -1.3038 10 14 -1.3255 6.1676 -0.1346 11 1 -1.1856 7.2411 -1.1510 12 1 -2.7183 5.6525 -0.1471 13 1 -1.0123 6.7149 1.2098 14 6 3.3834 3.6784 0.0002 15 16 4.2036 5.2379 0.0002 16 6 4.1133 2.5017 0.0004 17 6 3.4514 1.2722 0.0009 18 6 4.2127 0.0593 0.0006 19 7 4.8167 -0.9029 -0.0004 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2150 2.2822 -0.0014 24 1 -1.3975 3.8225 -1.7298 25 1 4.3183 5.4543 -1.3883 26 1 5.1928 2.5349 0.0051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575649702.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:08 Heat of formation + Delta-G solvation = 2.296925 kcal Electronic energy + Delta-G solvation = -13803.431805 eV Core-core repulsion = 11359.445699 eV Total energy + Delta-G solvation = -2443.986106 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.041 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.09686 -36.44830 -35.46699 -33.96354 -30.38398 -29.13032 -27.03236 -25.95810 -22.07575 -21.11648 -18.33461 -18.01066 -16.58298 -15.94562 -15.11701 -15.02863 -14.99005 -13.64706 -13.44798 -13.25760 -12.81325 -12.66595 -12.03396 -11.96465 -11.62609 -11.40038 -11.33349 -11.19489 -10.89736 -10.74959 -10.08565 -10.08117 -9.67721 -9.48666 -7.90214 -7.43501 -7.19276 -7.09335 -4.96453 2.06665 2.29291 2.79282 2.82077 2.89314 3.00005 3.54181 3.61762 3.79142 3.85010 4.05019 4.45626 5.19346 5.23988 5.65555 5.77587 5.89589 6.01895 6.49613 6.53560 6.61085 6.73322 7.08448 7.23961 7.46211 7.63116 7.92514 8.17164 8.28983 8.42258 8.65215 9.55502 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.010513 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.177905 B = 2662.721239 C = 3835.447290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.201 3.799 4 C -0.265 4.265 5 C 0.174 3.826 6 C -0.402 4.402 7 H 0.109 0.891 8 C 0.070 3.930 9 N -0.756 5.756 10 Si 0.921 3.079 11 H -0.263 1.263 12 H -0.272 1.272 13 H -0.251 1.251 14 C -0.245 4.245 15 S -0.161 6.161 16 C 0.048 3.952 17 C -0.212 4.212 18 C 0.297 3.703 19 N -0.503 5.503 20 H 0.084 0.916 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.139 0.861 24 H 0.292 0.708 25 H 0.066 0.934 26 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 2.978 0.828 4.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.242 6.242 3 C 0.154 3.846 4 C -0.287 4.287 5 C 0.166 3.834 6 C -0.428 4.428 7 H 0.127 0.873 8 C -0.154 4.154 9 N -0.378 5.378 10 Si 0.743 3.257 11 H -0.188 1.188 12 H -0.196 1.196 13 H -0.174 1.174 14 C -0.359 4.359 15 S -0.004 6.004 16 C 0.024 3.976 17 C -0.221 4.221 18 C -0.014 4.014 19 N -0.183 5.183 20 H 0.103 0.897 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.156 0.844 24 H 0.103 0.897 25 H 0.031 0.969 26 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.578 2.009 0.956 3.405 hybrid contribution -1.580 0.229 -1.022 1.895 sum -4.157 2.238 -0.067 4.722 Atomic orbital electron populations 1.22896 0.79161 1.02154 1.01911 1.85947 1.20919 1.28722 1.88642 1.18384 0.89892 0.83910 0.92464 1.20962 1.00041 0.90553 1.17146 1.18572 0.89027 0.92615 0.83152 1.20153 0.95755 0.97859 1.29033 0.87273 1.26340 0.98718 0.97476 0.92865 1.69758 1.20881 1.29540 1.17611 0.86057 0.78341 0.80181 0.81110 1.18790 1.19633 1.17419 1.21692 0.94703 0.92121 1.27423 1.86021 1.76280 1.26866 1.11252 1.20749 0.97603 0.89430 0.89812 1.14591 0.88015 0.86920 1.32553 1.25726 0.92086 0.92476 0.91066 1.81036 1.10649 1.11075 1.15507 0.89732 0.93066 0.92148 0.84398 0.89658 0.96914 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.79 101.05 0.99 1.55 15 2 O -0.33 -6.85 9.86 -19.08 -0.19 -7.03 15 3 C 0.20 4.46 6.64 -39.29 -0.26 4.20 15 4 C -0.27 -5.99 7.59 -39.22 -0.30 -6.28 15 5 C 0.17 4.01 5.72 -104.75 -0.60 3.41 15 6 C -0.40 -8.94 8.53 -38.00 -0.32 -9.27 15 7 H 0.11 2.36 7.15 -52.49 -0.38 1.99 15 8 C 0.07 1.45 5.16 -17.30 -0.09 1.37 15 9 N -0.76 -16.07 10.96 55.56 0.61 -15.46 15 10 Si 0.92 15.52 29.60 -169.99 -5.03 10.49 15 11 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 12 H -0.27 -4.48 7.11 56.52 0.40 -4.08 15 13 H -0.25 -4.24 7.11 56.52 0.40 -3.84 15 14 C -0.25 -5.35 6.34 -36.23 -0.23 -5.58 15 15 S -0.16 -3.13 24.54 -107.50 -2.64 -5.77 15 16 C 0.05 1.00 9.48 -38.97 -0.37 0.63 15 17 C -0.21 -4.67 5.76 -106.50 -0.61 -5.29 15 18 C 0.30 6.62 14.77 -22.47 -0.33 6.29 15 19 N -0.50 -11.57 18.54 41.84 0.78 -10.80 15 20 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 21 H 0.05 0.80 7.62 -51.93 -0.40 0.41 15 22 H 0.06 1.01 7.62 -51.93 -0.40 0.61 15 23 H 0.14 3.05 4.30 -52.49 -0.23 2.82 15 24 H 0.29 5.53 8.30 -40.82 -0.34 5.20 15 25 H 0.07 1.24 9.55 96.90 0.93 2.17 15 26 H 0.12 2.17 8.06 -52.49 -0.42 1.75 15 LS Contribution 255.34 15.07 3.85 3.85 Total: -1.00 -24.82 255.34 -5.20 -30.01 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -0.45 Total: 3.68 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.13 Total: -8.98 kcal Atomic # 7 Polarization: -27.64 SS G_CDS: 1.38 Total: -26.25 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.19 Total: -7.03 kcal Atomic # 14 Polarization: 15.52 SS G_CDS: -5.03 Total: 10.49 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.64 Total: -5.77 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -24.82 -5.20 -30.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649702.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.312 kcal (2) G-P(sol) polarization free energy of solvation -24.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds