Wall clock time and date at job start Mon Mar 30 2020 03:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35790 * 116.99842 * 2 1 4 4 C 1.36436 * 119.53450 * 359.97438 * 3 2 1 5 5 C 1.40903 * 120.04692 * 179.97438 * 4 3 2 6 6 C 1.40555 * 120.40085 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00078 * 154.16919 * 6 5 4 8 8 C 1.40139 * 120.00037 * 334.17071 * 6 5 4 9 9 N 1.30743 * 120.00010 * 343.52819 * 8 6 5 10 10 Si 1.86795 * 119.99926 * 163.52866 * 8 6 5 11 11 H 1.48501 * 109.47311 * 90.00285 * 10 8 6 12 12 H 1.48506 * 109.47354 * 209.99835 * 10 8 6 13 13 H 1.48496 * 109.47231 * 329.99906 * 10 8 6 14 14 C 1.46366 * 119.19394 * 0.04193 * 5 4 3 15 15 S 1.76204 * 120.44892 * 179.97438 * 14 5 4 16 16 C 1.38464 * 119.10459 * 359.97438 * 14 5 4 17 17 C 1.39644 * 119.89001 * 359.97438 * 16 14 5 18 18 C 1.43202 * 119.58542 * 179.97438 * 17 16 14 19 19 N 3.50596 * 165.07703 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.46865 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47556 * 299.99881 * 1 2 3 22 22 H 1.08999 * 109.47381 * 59.99958 * 1 2 3 23 23 H 1.07999 * 119.97267 * 359.97438 * 4 3 2 24 24 H 0.97001 * 120.00361 * 185.04275 * 9 8 6 25 25 H 1.40997 * 100.00177 * 269.97897 * 15 14 5 26 26 H 1.07994 * 120.05287 * 180.27762 * 16 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 1.2930 2.3481 -0.0005 5 6 1.9214 3.6092 0.0000 6 6 1.1536 4.7865 -0.0011 7 1 1.5632 5.6987 0.4068 8 6 -0.1436 4.7765 -0.5314 9 7 -0.5265 3.7937 -1.3038 10 14 -1.3255 6.1676 -0.1346 11 1 -1.1856 7.2411 -1.1510 12 1 -2.7183 5.6525 -0.1471 13 1 -1.0123 6.7149 1.2098 14 6 3.3834 3.6784 0.0002 15 16 4.2036 5.2379 0.0002 16 6 4.1133 2.5017 0.0004 17 6 3.4514 1.2722 0.0009 18 6 4.2127 0.0593 0.0006 19 7 4.8167 -0.9029 -0.0004 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.2150 2.2822 -0.0014 24 1 -1.3975 3.8225 -1.7298 25 1 4.3183 5.4543 -1.3883 26 1 5.1928 2.5349 0.0051 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575649702.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:08 Heat of formation + Delta-G solvation = -10.282387 kcal Electronic energy + Delta-G solvation = -13803.977285 eV Core-core repulsion = 11359.445699 eV Total energy + Delta-G solvation = -2444.531586 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 235.041 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.70977 -38.07123 -37.20370 -35.60720 -32.05308 -30.76127 -28.55245 -27.53553 -23.73995 -22.73885 -19.99128 -19.65435 -18.17788 -17.52167 -16.67677 -16.57736 -16.51833 -15.21807 -15.05843 -14.78325 -14.50496 -14.24946 -13.70449 -13.62088 -13.12251 -12.99320 -12.88248 -12.65556 -12.43766 -12.12291 -11.68429 -11.65235 -11.26194 -11.06016 -9.59604 -9.04471 -8.82105 -8.63427 -6.65467 0.40040 0.66913 1.38654 1.41678 1.47044 1.59165 1.94198 2.08203 2.16247 2.22923 2.55294 2.77494 3.50055 3.51540 4.24748 4.43241 4.47767 4.70312 4.89667 4.92189 4.95560 5.10251 5.41001 5.59033 5.78017 5.96033 6.27666 6.52215 6.61723 6.73536 6.93023 8.00970 Molecular weight = 235.04amu Principal moments of inertia in cm(-1) A = 0.022126 B = 0.010513 C = 0.007299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.177905 B = 2662.721239 C = 3835.447290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.344 6.344 3 C 0.196 3.804 4 C -0.278 4.278 5 C 0.147 3.853 6 C -0.417 4.417 7 H 0.111 0.889 8 C 0.039 3.961 9 N -0.776 5.776 10 Si 0.987 3.013 11 H -0.260 1.260 12 H -0.263 1.263 13 H -0.251 1.251 14 C -0.266 4.266 15 S -0.140 6.140 16 C 0.052 3.948 17 C -0.229 4.229 18 C 0.305 3.695 19 N -0.520 5.520 20 H 0.119 0.881 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.138 0.862 24 H 0.303 0.697 25 H 0.070 0.930 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 3.860 0.896 6.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.257 6.257 3 C 0.148 3.852 4 C -0.299 4.299 5 C 0.140 3.860 6 C -0.442 4.442 7 H 0.129 0.871 8 C -0.184 4.184 9 N -0.398 5.398 10 Si 0.806 3.194 11 H -0.184 1.184 12 H -0.188 1.188 13 H -0.174 1.174 14 C -0.380 4.380 15 S 0.017 5.983 16 C 0.029 3.971 17 C -0.238 4.238 18 C -0.004 4.004 19 N -0.200 5.200 20 H 0.137 0.863 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.155 0.845 24 H 0.115 0.885 25 H 0.035 0.965 26 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.431 2.869 1.019 4.588 hybrid contribution -1.368 -0.033 -1.076 1.740 sum -4.799 2.837 -0.057 5.575 Atomic orbital electron populations 1.23143 0.77009 1.04424 1.01826 1.85926 1.23162 1.28216 1.88442 1.18499 0.90166 0.84335 0.92155 1.20978 1.00083 0.90714 1.18128 1.18928 0.89974 0.93211 0.83884 1.20396 0.96872 0.97718 1.29221 0.87111 1.27085 0.99447 0.99684 0.92146 1.69767 1.21758 1.30720 1.17559 0.85078 0.76405 0.77218 0.80678 1.18448 1.18765 1.17427 1.21940 0.94729 0.93599 1.27714 1.85833 1.75562 1.25479 1.11423 1.20953 0.98551 0.88869 0.88739 1.14752 0.88189 0.87157 1.33659 1.25770 0.91719 0.92342 0.90600 1.81029 1.11182 1.11405 1.16387 0.86309 0.92590 0.92733 0.84453 0.88545 0.96481 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.79 113.37 1.11 2.08 15 2 O -0.34 -14.18 9.86 -91.20 -0.90 -15.08 15 3 C 0.20 8.73 6.64 22.46 0.15 8.88 15 4 C -0.28 -12.55 7.59 22.50 0.17 -12.38 15 5 C 0.15 6.79 5.72 -19.95 -0.11 6.68 15 6 C -0.42 -18.28 8.53 23.30 0.20 -18.09 15 7 H 0.11 4.70 7.15 -2.91 -0.02 4.68 15 8 C 0.04 1.57 5.16 85.32 0.44 2.01 15 9 N -0.78 -32.31 10.96 21.86 0.24 -32.07 15 10 Si 0.99 30.33 29.60 68.60 2.03 32.36 15 11 H -0.26 -7.85 7.11 99.48 0.71 -7.14 15 12 H -0.26 -7.70 7.11 99.48 0.71 -6.99 15 13 H -0.25 -7.67 7.11 99.48 0.71 -6.97 15 14 C -0.27 -11.48 6.34 24.44 0.15 -11.32 15 15 S -0.14 -5.26 24.54 -56.49 -1.39 -6.64 15 16 C 0.05 2.16 9.48 22.66 0.21 2.37 15 17 C -0.23 -10.05 5.76 -21.08 -0.12 -10.17 15 18 C 0.31 13.52 14.77 88.33 1.30 14.83 15 19 N -0.52 -23.68 18.54 19.00 0.35 -23.32 15 20 H 0.12 2.90 8.14 -2.39 -0.02 2.88 15 21 H 0.06 1.71 7.62 -2.39 -0.02 1.69 15 22 H 0.05 1.79 7.62 -2.39 -0.02 1.77 15 23 H 0.14 6.09 4.30 -2.91 -0.01 6.07 15 24 H 0.30 11.10 8.30 -92.71 -0.77 10.33 15 25 H 0.07 2.56 9.55 73.80 0.70 3.26 15 26 H 0.14 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -51.17 255.34 5.79 -45.38 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 1.94 Total: 14.50 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 3.51 Total: -15.11 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.59 Total: -55.40 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.90 Total: -15.08 kcal Atomic # 14 Polarization: 30.33 SS G_CDS: 2.03 Total: 32.36 kcal Atomic # 16 Polarization: -5.26 SS G_CDS: -1.39 Total: -6.64 kcal Total: -51.17 5.79 -45.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575649702.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.097 kcal (2) G-P(sol) polarization free energy of solvation -51.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds