Wall clock time and date at job start Mon Mar 30 2020 03:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99839 * 2 1 4 4 C 1.52998 * 115.55935 * 34.30874 * 3 2 1 5 5 C 1.53068 * 117.51370 * 248.60559 * 3 2 1 6 6 C 1.52996 * 117.49636 * 179.97438 * 3 2 1 7 7 H 1.08998 * 117.49709 * 214.99871 * 6 3 2 8 8 N 1.46502 * 117.50140 * 0.02562 * 6 3 2 9 9 S 1.65602 * 119.99790 * 214.90998 * 8 6 3 10 10 O 1.42104 * 106.40275 * 311.45546 * 9 8 6 11 11 O 1.42096 * 106.40308 * 178.53485 * 9 8 6 12 12 C 1.76201 * 107.21768 * 64.99512 * 9 8 6 13 13 H 1.08000 * 120.00595 * 359.97438 * 12 9 8 14 14 C 1.37885 * 119.99870 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 H 1.09004 * 109.46903 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47519 * 300.00047 * 1 2 3 22 22 H 1.09004 * 109.47094 * 60.00796 * 1 2 3 23 23 H 1.08997 * 109.46953 * 205.68705 * 4 3 2 24 24 H 1.09007 * 109.47243 * 325.68742 * 4 3 2 25 25 H 1.09002 * 109.47393 * 85.68767 * 4 3 2 26 26 H 1.09000 * 117.49640 * 145.03742 * 5 3 2 27 27 H 1.09005 * 117.53401 * 359.97438 * 5 3 2 28 28 H 0.96997 * 120.00136 * 34.89810 * 8 6 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.2371 2.3722 0.7780 5 6 2.7502 1.7501 -1.2640 6 6 3.5373 1.3989 0.0006 7 1 3.9911 2.2202 0.5552 8 7 4.2918 0.1431 0.0006 9 16 5.7261 0.0389 0.8218 10 8 6.4897 1.1755 0.4417 11 8 6.1856 -1.2959 0.6592 12 6 5.3617 0.2345 2.5346 13 1 4.3421 0.3886 2.8558 14 6 6.3785 0.1918 3.4650 15 7 7.6201 0.0046 3.0740 16 14 5.9922 0.3998 5.2808 17 1 7.2491 0.3143 6.0671 18 1 5.3577 1.7238 5.5033 19 1 5.0629 -0.6738 5.7153 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 1.4655 3.3567 0.3696 24 1 0.1674 2.1818 0.6907 25 1 1.5277 2.3382 1.8280 26 1 2.6861 2.8024 -1.5409 27 1 2.7943 1.0469 -2.0957 28 1 3.9513 -0.6274 -0.4804 29 1 8.3354 -0.0251 3.7285 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694363589.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:09 Heat of formation + Delta-G solvation = -138.107959 kcal Electronic energy + Delta-G solvation = -15301.964677 eV Core-core repulsion = 12544.581238 eV Total energy + Delta-G solvation = -2757.383438 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15483 -37.42679 -36.66756 -36.15978 -35.18338 -33.07490 -29.26086 -28.24676 -27.36241 -23.05296 -21.27942 -21.00948 -19.40362 -18.26143 -18.04740 -17.03013 -16.31453 -16.14195 -15.90766 -15.69531 -15.04084 -14.59569 -14.05445 -13.99382 -13.36513 -13.00707 -12.99561 -12.85920 -12.75949 -12.63721 -12.50621 -12.43732 -12.30989 -12.11256 -11.63367 -11.22487 -10.95409 -10.17653 -9.65791 -8.74068 -7.47534 0.32827 1.34682 1.37399 1.50444 2.21655 2.58127 2.59666 2.85435 3.00011 3.63793 3.81733 3.87802 4.08663 4.30194 4.49764 4.57176 4.60973 4.75021 4.83293 4.88379 4.91232 4.95370 5.23552 5.25763 5.40927 5.91628 6.27472 6.42147 6.78709 8.22148 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.009318 C = 0.008015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.508446 B = 3004.233011 C = 3492.701752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.375 6.375 3 C 0.030 3.970 4 C -0.144 4.144 5 C -0.188 4.188 6 C 0.084 3.916 7 H 0.136 0.864 8 N -1.088 6.088 9 S 2.723 3.277 10 O -1.040 7.040 11 O -1.046 7.046 12 C -1.036 5.036 13 H 0.119 0.881 14 C 0.069 3.931 15 N -0.894 5.894 16 Si 0.992 3.008 17 H -0.263 1.263 18 H -0.246 1.246 19 H -0.254 1.254 20 H 0.093 0.907 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.092 0.908 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.414 0.586 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.476 5.115 -2.768 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.294 6.294 3 C -0.012 4.012 4 C -0.201 4.201 5 C -0.227 4.227 6 C -0.025 4.025 7 H 0.153 0.847 8 N -0.842 5.842 9 S 2.824 3.176 10 O -1.029 7.029 11 O -1.037 7.037 12 C -1.170 5.170 13 H 0.137 0.863 14 C -0.143 4.143 15 N -0.526 5.526 16 Si 0.810 3.190 17 H -0.187 1.187 18 H -0.170 1.170 19 H -0.178 1.178 20 H 0.112 0.888 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.111 0.889 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.119 0.881 28 H 0.247 0.753 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.228 4.924 -3.090 15.370 hybrid contribution -0.361 -0.348 0.808 0.951 sum -14.589 4.576 -2.282 15.459 Atomic orbital electron populations 1.23028 0.79526 1.03669 1.01354 1.87899 1.21707 1.25300 1.94492 1.22695 0.92320 0.85954 1.00255 1.21891 1.00892 0.97216 1.00134 1.24306 1.01951 1.04075 0.92415 1.21966 0.89249 0.87814 1.03518 0.84685 1.54843 1.41771 1.19089 1.68511 0.99816 0.70684 0.71451 0.75633 1.93309 1.69797 1.54284 1.85537 1.93308 1.80329 1.41059 1.88955 1.30842 1.03345 1.65601 1.17233 0.86309 1.26047 0.92864 0.87789 1.07649 1.69990 1.01637 1.40904 1.40039 0.85142 0.79255 0.80737 0.73897 1.18725 1.16967 1.17768 0.88820 0.92311 0.92474 0.88872 0.89162 0.91639 0.84826 0.88119 0.75291 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.05 113.37 1.14 1.53 15 2 O -0.38 -11.14 10.56 -148.98 -1.57 -12.71 15 3 C 0.03 0.85 3.03 -10.77 -0.03 0.81 15 4 C -0.14 -2.92 9.49 71.98 0.68 -2.23 15 5 C -0.19 -4.92 10.06 30.63 0.31 -4.61 15 6 C 0.08 2.96 6.19 45.00 0.28 3.24 15 7 H 0.14 4.86 8.10 -2.39 -0.02 4.84 15 8 N -1.09 -46.64 5.86 -169.34 -0.99 -47.63 15 9 S 2.72 151.79 5.00 -56.49 -0.28 151.50 15 10 O -1.04 -63.23 17.77 -128.00 -2.27 -65.51 15 11 O -1.05 -65.23 18.02 -128.00 -2.31 -67.54 15 12 C -1.04 -58.29 9.72 67.74 0.66 -57.63 15 13 H 0.12 6.08 7.81 -2.91 -0.02 6.05 15 14 C 0.07 3.91 5.46 84.66 0.46 4.37 15 15 N -0.89 -54.11 13.19 21.45 0.28 -53.82 15 16 Si 0.99 41.62 29.54 68.60 2.03 43.65 15 17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 18 H -0.25 -9.54 7.11 99.48 0.71 -8.83 15 19 H -0.25 -10.14 7.11 99.48 0.71 -9.43 15 20 H 0.09 1.62 8.14 -2.38 -0.02 1.60 15 21 H 0.06 0.99 6.47 -2.39 -0.02 0.98 15 22 H 0.06 0.91 8.14 -2.39 -0.02 0.89 15 23 H 0.09 1.49 7.90 -2.39 -0.02 1.47 15 24 H 0.09 1.40 5.78 -2.38 -0.01 1.39 15 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 15 26 H 0.13 2.64 8.05 -2.39 -0.02 2.62 15 27 H 0.10 2.63 8.14 -2.38 -0.02 2.61 15 28 H 0.41 16.37 8.76 -96.75 -0.85 15.52 15 29 H 0.30 16.24 8.31 -92.71 -0.77 15.47 15 Total: -1.00 -78.32 268.99 -1.31 -79.63 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.32 Total: 26.96 kcal Atomic # 6 Polarization: -58.03 SS G_CDS: 3.50 Total: -54.53 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -0.71 Total: -101.45 kcal Atomic # 8 Polarization: -139.61 SS G_CDS: -6.15 Total: -145.76 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 151.79 SS G_CDS: -0.28 Total: 151.50 kcal Total: -78.32 -1.31 -79.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694363589.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.479 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds