Wall clock time and date at job start Mon Mar 30 2020 03:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.45853 * 2 1 4 4 C 1.54481 * 110.62692 * 122.68599 * 2 1 3 5 5 O 1.44419 * 104.80578 * 142.68298 * 4 2 1 6 6 C 1.44422 * 105.27419 * 319.48275 * 5 4 2 7 7 C 1.54479 * 104.80221 * 40.51598 * 6 5 4 8 8 H 1.08998 * 110.63010 * 94.72533 * 7 6 5 9 9 N 1.46506 * 110.51185 * 217.37749 * 7 6 5 10 10 S 1.65597 * 119.99791 * 259.64327 * 9 7 6 11 11 O 1.42102 * 106.40060 * 178.54054 * 10 9 7 12 12 O 1.42101 * 106.40207 * 311.45359 * 10 9 7 13 13 C 1.76196 * 107.22133 * 64.99502 * 10 9 7 14 14 H 1.08005 * 119.99999 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00092 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00337 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00115 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.46892 * 90.00064 * 17 15 13 19 19 H 1.48491 * 109.47202 * 209.99958 * 17 15 13 20 20 H 1.48493 * 109.47206 * 330.00216 * 17 15 13 21 21 H 1.09005 * 109.47027 * 182.60661 * 1 2 3 22 22 H 1.08997 * 109.47059 * 302.60317 * 1 2 3 23 23 H 1.08998 * 109.46990 * 62.61032 * 1 2 3 24 24 H 1.09003 * 110.36883 * 261.51200 * 4 2 1 25 25 H 1.09002 * 110.37581 * 23.84443 * 4 2 1 26 26 H 1.08998 * 110.37478 * 281.68425 * 6 5 4 27 27 H 1.08998 * 110.37073 * 159.34260 * 6 5 4 28 28 H 0.96995 * 120.00050 * 79.36411 * 9 7 6 29 29 H 0.96995 * 120.00364 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2168 5 8 3.2435 -1.4684 0.7212 6 6 2.8787 -1.9395 -0.5944 7 6 2.0715 -0.7799 -1.2190 8 1 2.7181 -0.1435 -1.8231 9 7 0.9661 -1.3008 -2.0273 10 16 1.1108 -1.3795 -3.6751 11 8 -0.0969 -1.9527 -4.1569 12 8 1.5910 -0.1103 -4.0968 13 6 2.3888 -2.5387 -4.0318 14 1 2.9051 -3.0385 -3.2254 15 6 2.7300 -2.8078 -5.3403 16 7 2.1018 -2.1988 -6.3222 17 14 4.0845 -4.0373 -5.7185 18 1 3.4973 -5.3947 -5.8532 19 1 4.7552 -3.6599 -6.9884 20 1 5.0776 -4.0350 -4.6145 21 1 -0.3633 -1.0267 0.0467 22 1 -0.3633 0.5537 0.8657 23 1 -0.3633 0.4728 -0.9124 24 1 2.3490 -0.0932 2.0168 25 1 1.3332 -1.4980 1.5698 26 1 2.2611 -2.8344 -0.5193 27 1 3.7715 -2.1420 -1.1860 28 1 0.1512 -1.6033 -1.5970 29 1 2.3416 -2.3884 -7.2428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699856723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:50 Heat of formation + Delta-G solvation = -140.688011 kcal Electronic energy + Delta-G solvation = -15626.832376 eV Core-core repulsion = 12869.337058 eV Total energy + Delta-G solvation = -2757.495318 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.50312 -35.25796 -34.72771 -33.97537 -33.09700 -31.68713 -27.89856 -26.18077 -26.10534 -22.51316 -19.90965 -19.13178 -17.67399 -16.60743 -15.96097 -15.67774 -15.12506 -14.90723 -14.38984 -13.96330 -13.60972 -13.34207 -12.70503 -12.16361 -12.09836 -11.91785 -11.28062 -11.22336 -10.99889 -10.91506 -10.61847 -10.53588 -10.32279 -10.29443 -10.19432 -9.67063 -9.26220 -9.02333 -8.56888 -6.71916 -5.34391 2.29976 3.06246 3.13364 3.19368 4.02546 4.15290 4.62218 4.63522 4.80708 4.90602 5.10354 5.33124 5.46474 5.55047 5.66962 5.74787 5.81411 5.92782 6.08759 6.14126 6.22226 6.28080 6.45643 6.76583 6.99831 7.30116 7.83850 7.94697 8.87290 10.22328 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.009891 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.631940 B = 2830.221270 C = 3433.175604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 H 0.089 0.911 4 C 0.048 3.952 5 O -0.378 6.378 6 C 0.027 3.973 7 C 0.132 3.868 8 H 0.108 0.892 9 N -1.126 6.126 10 S 2.712 3.288 11 O -1.006 7.006 12 O -1.006 7.006 13 C -1.021 5.021 14 H 0.103 0.897 15 C 0.133 3.867 16 N -0.845 5.845 17 Si 0.920 3.080 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.262 1.262 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.403 0.597 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 1.292 11.569 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 H 0.108 0.892 4 C -0.029 4.029 5 O -0.296 6.296 6 C -0.052 4.052 7 C 0.022 3.978 8 H 0.126 0.874 9 N -0.881 5.881 10 S 2.811 3.189 11 O -0.997 6.997 12 O -0.996 6.996 13 C -1.154 5.154 14 H 0.121 0.879 15 C -0.085 4.085 16 N -0.474 5.474 17 Si 0.744 3.256 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.186 1.186 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.237 0.763 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.137 1.891 10.786 10.952 hybrid contribution 0.601 -1.217 -0.028 1.358 sum 0.464 0.674 10.759 10.790 Atomic orbital electron populations 1.21723 0.94014 1.01933 1.02251 1.22770 0.97162 1.00604 0.94925 0.89246 1.23488 0.88188 0.94953 0.96238 1.89102 1.34949 1.74022 1.31525 1.24125 1.00729 0.97017 0.83304 1.21928 0.88527 0.94381 0.92948 0.87396 1.56181 1.23651 1.80374 1.27938 1.00513 0.74822 0.74707 0.68814 1.93378 1.49155 1.79981 1.77158 1.93363 1.82653 1.44595 1.78960 1.30570 1.40521 1.44490 0.99848 0.87891 1.24739 0.95270 0.94031 0.94432 1.69893 1.38197 1.37883 1.01475 0.86169 0.80507 0.80386 0.78548 1.19231 1.20004 1.18603 0.92302 0.92560 0.91401 0.89401 0.92347 0.91415 0.87975 0.76349 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 7.91 37.16 0.29 -1.40 15 2 C -0.13 -1.78 3.71 -89.05 -0.33 -2.11 15 3 H 0.09 1.10 8.14 -51.93 -0.42 0.68 15 4 C 0.05 0.59 7.19 37.93 0.27 0.86 15 5 O -0.38 -5.80 11.65 -35.23 -0.41 -6.22 15 6 C 0.03 0.43 7.14 37.93 0.27 0.70 15 7 C 0.13 2.22 3.77 -66.36 -0.25 1.97 15 8 H 0.11 1.97 7.57 -51.93 -0.39 1.57 15 9 N -1.13 -21.33 4.76 -3.55 -0.02 -21.35 15 10 S 2.71 69.80 5.00 -107.50 -0.54 69.26 15 11 O -1.01 -28.92 18.02 -57.17 -1.03 -29.95 15 12 O -1.01 -28.70 17.40 -57.17 -0.99 -29.70 15 13 C -1.02 -27.22 9.72 30.60 0.30 -26.92 15 14 H 0.10 2.47 7.56 -52.48 -0.40 2.07 15 15 C 0.13 3.66 5.46 -17.82 -0.10 3.56 15 16 N -0.84 -24.58 13.19 55.43 0.73 -23.85 15 17 Si 0.92 20.30 29.54 -169.99 -5.02 15.28 15 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 20 H -0.26 -5.56 7.11 56.52 0.40 -5.15 15 21 H 0.06 0.66 6.88 -51.93 -0.36 0.31 15 22 H 0.06 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.07 0.90 7.86 -51.93 -0.41 0.49 15 24 H 0.09 0.89 8.14 -51.93 -0.42 0.46 15 25 H 0.06 0.65 7.84 -51.93 -0.41 0.24 15 26 H 0.07 1.04 8.06 -51.93 -0.42 0.62 15 27 H 0.10 1.65 8.11 -51.93 -0.42 1.23 15 28 H 0.40 6.61 6.56 -34.47 -0.23 6.39 15 29 H 0.29 7.61 8.31 -40.82 -0.34 7.28 15 LS Contribution 258.95 15.07 3.90 3.90 Total: -1.00 -34.07 258.95 -6.35 -40.42 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -3.43 Total: 5.53 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: 0.46 Total: -23.33 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.71 Total: -45.19 kcal Atomic # 8 Polarization: -63.43 SS G_CDS: -2.44 Total: -65.86 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 69.80 SS G_CDS: -0.54 Total: 69.26 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.07 -6.35 -40.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699856723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.269 kcal (2) G-P(sol) polarization free energy of solvation -34.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds