Wall clock time and date at job start Mon Mar 30 2020 03:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.45853 * 2 1 4 4 C 1.54481 * 110.62692 * 122.68599 * 2 1 3 5 5 O 1.44419 * 104.80578 * 142.68298 * 4 2 1 6 6 C 1.44422 * 105.27419 * 319.48275 * 5 4 2 7 7 C 1.54479 * 104.80221 * 40.51598 * 6 5 4 8 8 H 1.08998 * 110.63010 * 94.72533 * 7 6 5 9 9 N 1.46506 * 110.51185 * 217.37749 * 7 6 5 10 10 S 1.65597 * 119.99791 * 259.64327 * 9 7 6 11 11 O 1.42102 * 106.40060 * 178.54054 * 10 9 7 12 12 O 1.42101 * 106.40207 * 311.45359 * 10 9 7 13 13 C 1.76196 * 107.22133 * 64.99502 * 10 9 7 14 14 H 1.08005 * 119.99999 * 0.02562 * 13 10 9 15 15 C 1.37876 * 120.00092 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00337 * 0.02562 * 15 13 10 17 17 Si 1.86803 * 120.00115 * 180.02562 * 15 13 10 18 18 H 1.48506 * 109.46892 * 90.00064 * 17 15 13 19 19 H 1.48491 * 109.47202 * 209.99958 * 17 15 13 20 20 H 1.48493 * 109.47206 * 330.00216 * 17 15 13 21 21 H 1.09005 * 109.47027 * 182.60661 * 1 2 3 22 22 H 1.08997 * 109.47059 * 302.60317 * 1 2 3 23 23 H 1.08998 * 109.46990 * 62.61032 * 1 2 3 24 24 H 1.09003 * 110.36883 * 261.51200 * 4 2 1 25 25 H 1.09002 * 110.37581 * 23.84443 * 4 2 1 26 26 H 1.08998 * 110.37478 * 281.68425 * 6 5 4 27 27 H 1.08998 * 110.37073 * 159.34260 * 6 5 4 28 28 H 0.96995 * 120.00050 * 79.36411 * 9 7 6 29 29 H 0.96995 * 120.00364 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2168 5 8 3.2435 -1.4684 0.7212 6 6 2.8787 -1.9395 -0.5944 7 6 2.0715 -0.7799 -1.2190 8 1 2.7181 -0.1435 -1.8231 9 7 0.9661 -1.3008 -2.0273 10 16 1.1108 -1.3795 -3.6751 11 8 -0.0969 -1.9527 -4.1569 12 8 1.5910 -0.1103 -4.0968 13 6 2.3888 -2.5387 -4.0318 14 1 2.9051 -3.0385 -3.2254 15 6 2.7300 -2.8078 -5.3403 16 7 2.1018 -2.1988 -6.3222 17 14 4.0845 -4.0373 -5.7185 18 1 3.4973 -5.3947 -5.8532 19 1 4.7552 -3.6599 -6.9884 20 1 5.0776 -4.0350 -4.6145 21 1 -0.3633 -1.0267 0.0467 22 1 -0.3633 0.5537 0.8657 23 1 -0.3633 0.4728 -0.9124 24 1 2.3490 -0.0932 2.0168 25 1 1.3332 -1.4980 1.5698 26 1 2.2611 -2.8344 -0.5193 27 1 3.7715 -2.1420 -1.1860 28 1 0.1512 -1.6033 -1.5970 29 1 2.3416 -2.3884 -7.2428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699856723.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:49 Heat of formation + Delta-G solvation = -169.121645 kcal Electronic energy + Delta-G solvation = -15628.065351 eV Core-core repulsion = 12869.337058 eV Total energy + Delta-G solvation = -2758.728293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68726 -37.40347 -36.16858 -36.07124 -35.15237 -32.90712 -29.27064 -28.20416 -27.14819 -23.70936 -21.21662 -21.00890 -19.47810 -18.45484 -17.47166 -17.08511 -16.79780 -16.21248 -15.94081 -15.79434 -15.31359 -14.61722 -13.99798 -13.86422 -13.35887 -13.28672 -13.18394 -13.00474 -12.51496 -12.45029 -12.34054 -12.29803 -12.03055 -11.89712 -11.59049 -11.24074 -10.98433 -10.77608 -10.21132 -8.74794 -7.47279 0.34006 1.35548 1.35914 1.51741 2.21130 2.59400 2.82694 3.20366 3.53963 3.66398 3.87909 3.95438 4.20740 4.29473 4.47030 4.53583 4.66503 4.74029 4.80807 4.90925 5.03707 5.12669 5.23683 5.30237 5.36574 5.82770 5.91168 6.35774 6.79885 8.21704 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.032909 B = 0.009891 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.631940 B = 2830.221270 C = 3433.175604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 H 0.098 0.902 4 C 0.048 3.952 5 O -0.389 6.389 6 C 0.030 3.970 7 C 0.117 3.883 8 H 0.087 0.913 9 N -1.107 6.107 10 S 2.718 3.282 11 O -1.044 7.044 12 O -1.043 7.043 13 C -1.037 5.037 14 H 0.124 0.876 15 C 0.071 3.929 16 N -0.895 5.895 17 Si 0.989 3.011 18 H -0.256 1.256 19 H -0.265 1.265 20 H -0.246 1.246 21 H 0.065 0.935 22 H 0.086 0.914 23 H 0.048 0.952 24 H 0.115 0.885 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.417 0.583 29 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 0.485 13.462 13.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 H 0.117 0.883 4 C -0.028 4.028 5 O -0.308 6.308 6 C -0.049 4.049 7 C 0.009 3.991 8 H 0.105 0.895 9 N -0.867 5.867 10 S 2.819 3.181 11 O -1.035 7.035 12 O -1.033 7.033 13 C -1.171 5.171 14 H 0.142 0.858 15 C -0.142 4.142 16 N -0.526 5.526 17 Si 0.807 3.193 18 H -0.180 1.180 19 H -0.190 1.190 20 H -0.169 1.169 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.067 0.933 24 H 0.133 0.867 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.254 0.746 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.622 1.096 12.703 12.765 hybrid contribution 0.317 -0.897 -0.514 1.082 sum 0.939 0.199 12.189 12.226 Atomic orbital electron populations 1.21758 0.92960 1.02704 1.02751 1.22801 0.98082 1.00702 0.93402 0.88334 1.23718 0.87601 0.95463 0.96047 1.89093 1.36485 1.74389 1.30807 1.24001 1.00311 0.96767 0.83813 1.22161 0.87898 0.95274 0.93779 0.89456 1.55491 1.25067 1.80455 1.25737 0.99936 0.74036 0.73947 0.70174 1.93316 1.50606 1.80373 1.79162 1.93309 1.83006 1.46205 1.80755 1.30930 1.40797 1.44560 1.00821 0.85773 1.25988 0.97910 0.96050 0.94262 1.69991 1.40333 1.39952 1.02335 0.85145 0.77320 0.77705 0.79133 1.18012 1.18984 1.16914 0.91659 0.89520 0.93258 0.86665 0.90697 0.90663 0.88689 0.74626 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 7.91 71.98 0.57 -2.52 15 2 C -0.13 -3.14 3.71 -9.78 -0.04 -3.18 15 3 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 4 C 0.05 1.01 7.19 72.49 0.52 1.53 15 5 O -0.39 -11.00 11.65 -148.98 -1.74 -12.74 15 6 C 0.03 0.91 7.14 72.48 0.52 1.42 15 7 C 0.12 3.87 3.77 46.01 0.17 4.04 15 8 H 0.09 3.23 7.57 -2.39 -0.02 3.21 15 9 N -1.11 -41.59 4.76 -165.16 -0.79 -42.38 15 10 S 2.72 142.62 5.00 -56.49 -0.28 142.34 15 11 O -1.04 -61.48 18.02 -128.00 -2.31 -63.79 15 12 O -1.04 -61.38 17.40 -128.00 -2.23 -63.60 15 13 C -1.04 -55.37 9.72 67.73 0.66 -54.72 15 14 H 0.12 5.85 7.56 -2.91 -0.02 5.83 15 15 C 0.07 3.88 5.46 84.65 0.46 4.34 15 16 N -0.89 -52.99 13.19 21.45 0.28 -52.71 15 17 Si 0.99 40.71 29.54 68.60 2.03 42.74 15 18 H -0.26 -10.00 7.11 99.48 0.71 -9.29 15 19 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 20 H -0.25 -9.40 7.11 99.48 0.71 -8.70 15 21 H 0.06 1.30 6.88 -2.38 -0.02 1.29 15 22 H 0.09 1.35 8.14 -2.39 -0.02 1.34 15 23 H 0.05 1.24 7.86 -2.39 -0.02 1.23 15 24 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.07 1.36 7.84 -2.39 -0.02 1.34 15 26 H 0.08 2.17 8.06 -2.39 -0.02 2.15 15 27 H 0.09 2.99 8.11 -2.39 -0.02 2.97 15 28 H 0.42 13.33 6.56 -96.75 -0.64 12.70 15 29 H 0.30 15.89 8.31 -92.71 -0.77 15.12 15 Total: -1.00 -74.11 258.95 -1.64 -75.74 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.52 Total: 23.47 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 2.87 Total: -49.08 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -0.50 Total: -95.09 kcal Atomic # 8 Polarization: -133.86 SS G_CDS: -6.27 Total: -140.13 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 142.62 SS G_CDS: -0.28 Total: 142.34 kcal Total: -74.11 -1.64 -75.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699856723.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.378 kcal (2) G-P(sol) polarization free energy of solvation -74.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds