Wall clock time and date at job start Mon Mar 30 2020 03:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 110.82914 * 2 1 4 4 C 1.54997 * 110.90767 * 236.35263 * 2 1 3 5 5 O 1.44376 * 103.62951 * 204.85918 * 4 2 1 6 6 C 1.43743 * 106.97973 * 39.97901 * 5 4 2 7 7 C 1.54099 * 107.29091 * 333.48872 * 6 5 4 8 8 H 1.09002 * 110.48688 * 243.34914 * 7 6 5 9 9 N 1.46508 * 110.48853 * 120.83573 * 7 6 5 10 10 S 1.65600 * 119.99889 * 96.45046 * 9 7 6 11 11 O 1.42098 * 106.40079 * 178.54246 * 10 9 7 12 12 O 1.42100 * 106.40353 * 311.45977 * 10 9 7 13 13 C 1.76201 * 107.21742 * 65.00131 * 10 9 7 14 14 H 1.08003 * 119.99672 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99846 * 180.02562 * 13 10 9 16 16 N 1.31513 * 120.00146 * 359.97438 * 15 13 10 17 17 Si 1.86802 * 119.99570 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47538 * 90.00008 * 17 15 13 19 19 H 1.48507 * 109.46552 * 209.99595 * 17 15 13 20 20 H 1.48501 * 109.47174 * 329.99172 * 17 15 13 21 21 H 1.08996 * 109.47622 * 182.19168 * 1 2 3 22 22 H 1.09001 * 109.47719 * 302.19592 * 1 2 3 23 23 H 1.09006 * 109.47239 * 62.19063 * 1 2 3 24 24 H 1.09002 * 110.61957 * 86.27735 * 4 2 1 25 25 H 1.09000 * 110.61969 * 323.43626 * 4 2 1 26 26 H 1.08999 * 109.87631 * 92.90943 * 6 5 4 27 27 H 1.08997 * 109.88206 * 213.91339 * 6 5 4 28 28 H 0.96993 * 119.99916 * 276.45257 * 9 7 6 29 29 H 0.96996 * 119.99740 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9176 1.0188 0.0000 4 6 2.0831 -0.8023 -1.2053 5 8 3.3938 -1.2177 -0.7649 6 6 3.2730 -1.5915 0.6178 7 6 2.0866 -0.8018 1.2039 8 1 2.4281 -0.1267 1.9887 9 7 1.0681 -1.7174 1.7241 10 16 1.0403 -2.0954 3.3361 11 8 -0.0683 -2.9639 3.5255 12 8 2.3713 -2.4459 3.6891 13 6 0.6668 -0.6134 4.2130 14 1 0.5069 0.3080 3.6727 15 6 0.5787 -0.6301 5.5889 16 7 0.7728 -1.7522 6.2467 17 14 0.1820 0.9410 6.5183 18 1 -1.2895 1.0663 6.6736 19 1 0.8192 0.8971 7.8590 20 1 0.7012 2.1084 5.7615 21 1 -0.3634 -1.0268 0.0393 22 1 -0.3634 0.5475 0.8696 23 1 -0.3634 0.4795 -0.9090 24 1 2.1582 -0.1666 -2.0876 25 1 1.4546 -1.6689 -1.4105 26 1 3.0813 -2.6615 0.6971 27 1 4.1892 -1.3387 1.1515 28 1 0.4101 -2.1022 1.1243 29 1 0.7104 -1.7639 7.2146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699856728.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:57 Heat of formation + Delta-G solvation = -140.832858 kcal Electronic energy + Delta-G solvation = -15633.325714 eV Core-core repulsion = 12875.824116 eV Total energy + Delta-G solvation = -2757.501599 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.071 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47865 -35.24105 -34.64991 -33.97621 -33.12184 -31.65639 -28.00024 -26.16946 -26.12704 -22.30428 -20.01670 -19.19383 -17.71140 -16.50874 -15.99266 -15.67090 -14.97861 -14.89547 -14.58735 -13.98583 -13.43220 -13.30124 -12.79171 -12.13101 -12.08121 -11.86921 -11.31234 -11.23883 -11.04977 -10.92145 -10.63211 -10.55765 -10.31701 -10.23955 -10.21670 -9.48932 -9.27589 -9.07598 -8.58486 -6.73104 -5.35452 2.29548 3.04497 3.11679 3.17301 4.01839 4.12320 4.61264 4.63459 4.74221 4.94193 5.11422 5.34192 5.51448 5.58724 5.69881 5.74669 5.82703 5.90729 6.10686 6.18317 6.24118 6.37693 6.48925 6.81652 7.02409 7.29283 7.83474 7.93790 8.86004 10.21164 Molecular weight = 235.07amu Principal moments of inertia in cm(-1) A = 0.034538 B = 0.009246 C = 0.008477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.506463 B = 3027.699693 C = 3302.158558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 H 0.092 0.908 4 C 0.049 3.951 5 O -0.383 6.383 6 C 0.032 3.968 7 C 0.133 3.867 8 H 0.106 0.894 9 N -1.126 6.126 10 S 2.712 3.288 11 O -1.006 7.006 12 O -1.004 7.004 13 C -1.021 5.021 14 H 0.102 0.898 15 C 0.133 3.867 16 N -0.844 5.844 17 Si 0.920 3.080 18 H -0.267 1.267 19 H -0.275 1.275 20 H -0.263 1.263 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.402 0.598 29 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.236 4.916 -10.446 11.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.153 4.153 3 H 0.110 0.890 4 C -0.027 4.027 5 O -0.301 6.301 6 C -0.047 4.047 7 C 0.023 3.977 8 H 0.124 0.876 9 N -0.881 5.881 10 S 2.812 3.188 11 O -0.997 6.997 12 O -0.994 6.994 13 C -1.154 5.154 14 H 0.120 0.880 15 C -0.085 4.085 16 N -0.474 5.474 17 Si 0.744 3.256 18 H -0.192 1.192 19 H -0.200 1.200 20 H -0.187 1.187 21 H 0.079 0.921 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.111 0.889 28 H 0.235 0.765 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.754 3.981 -9.929 10.724 hybrid contribution -0.834 1.250 0.489 1.580 sum -0.079 5.232 -9.441 10.794 Atomic orbital electron populations 1.21656 0.93499 1.02500 1.02032 1.22999 0.97343 1.00114 0.94845 0.88988 1.23609 0.84661 0.97491 0.96981 1.88830 1.28924 1.86419 1.25954 1.23848 0.99610 0.99695 0.81513 1.21906 0.87770 0.90877 0.97119 0.87612 1.56234 1.41574 1.60777 1.29557 1.00519 0.73137 0.75506 0.69655 1.93377 1.54818 1.67614 1.83876 1.93370 1.40029 1.84734 1.81300 1.30536 1.64649 1.17307 1.02902 0.87965 1.24744 0.89076 0.97988 0.96717 1.69894 1.39729 1.26823 1.10952 0.86166 0.79302 0.81497 0.78605 1.19224 1.19978 1.18687 0.92055 0.91320 0.92710 0.89345 0.92309 0.91432 0.88870 0.76485 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.68 37.16 0.32 -1.37 15 2 C -0.13 -1.73 3.70 -88.52 -0.33 -2.06 15 3 H 0.09 1.09 8.14 -51.93 -0.42 0.66 15 4 C 0.05 0.61 7.17 38.21 0.27 0.89 15 5 O -0.38 -5.92 11.52 -35.23 -0.41 -6.32 15 6 C 0.03 0.52 7.51 37.73 0.28 0.81 15 7 C 0.13 2.21 3.47 -66.30 -0.23 1.98 15 8 H 0.11 1.83 7.94 -51.93 -0.41 1.42 15 9 N -1.13 -21.30 4.75 -3.51 -0.02 -21.31 15 10 S 2.71 69.55 4.96 -107.50 -0.53 69.02 15 11 O -1.01 -28.91 18.02 -57.17 -1.03 -29.94 15 12 O -1.00 -28.39 17.78 -57.17 -1.02 -29.40 15 13 C -1.02 -27.16 9.62 30.60 0.29 -26.87 15 14 H 0.10 2.46 7.81 -52.48 -0.41 2.05 15 15 C 0.13 3.64 5.46 -17.82 -0.10 3.54 15 16 N -0.84 -24.52 13.19 55.43 0.73 -23.79 15 17 Si 0.92 20.19 29.54 -169.99 -5.02 15.17 15 18 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 20 H -0.26 -5.54 7.11 56.52 0.40 -5.13 15 21 H 0.06 0.75 6.11 -51.93 -0.32 0.43 15 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 15 24 H 0.09 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.06 0.69 8.05 -51.93 -0.42 0.28 15 26 H 0.07 1.16 7.93 -51.93 -0.41 0.74 15 27 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 28 H 0.40 6.62 6.76 -34.47 -0.23 6.38 15 29 H 0.29 7.60 8.31 -40.82 -0.34 7.26 15 LS Contribution 260.32 15.07 3.92 3.92 Total: -1.00 -33.91 260.32 -6.30 -40.21 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -3.45 Total: 5.53 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: 0.52 Total: -23.08 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 0.71 Total: -45.10 kcal Atomic # 8 Polarization: -63.21 SS G_CDS: -2.45 Total: -65.67 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 69.55 SS G_CDS: -0.53 Total: 69.02 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -33.91 -6.30 -40.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699856728.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.623 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds