Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30516 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47018 * 269.99946 * 3 2 1 5 5 H 1.48507 * 109.47040 * 29.99564 * 3 2 1 6 6 H 1.48496 * 109.47315 * 149.99725 * 3 2 1 7 7 C 1.40440 * 120.00471 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00030 * 180.02562 * 7 2 1 9 9 C 1.40376 * 119.99505 * 0.02562 * 7 2 1 10 10 N 1.33184 * 126.67913 * 180.02562 * 9 7 2 11 11 C 1.34288 * 105.48294 * 179.97438 * 10 9 7 12 12 C 1.48460 * 126.20431 * 179.97438 * 11 10 9 13 13 C 1.39307 * 120.52157 * 359.97438 * 12 11 10 14 14 N 1.31707 * 120.65678 * 179.97438 * 13 12 11 15 15 C 1.31913 * 121.87769 * 0.02562 * 14 13 12 16 16 C 1.38499 * 120.98592 * 0.02562 * 15 14 13 17 17 F 1.35096 * 120.38715 * 180.02562 * 16 15 14 18 18 C 1.38679 * 119.22578 * 359.70143 * 16 15 14 19 19 N 1.31264 * 107.59206 * 359.97438 * 11 10 9 20 20 O 1.21265 * 110.53078 * 0.02562 * 19 11 10 21 21 H 0.96992 * 120.00336 * 0.02562 * 1 2 3 22 22 H 1.07997 * 119.67137 * 0.02562 * 13 12 11 23 23 H 1.07994 * 119.50479 * 180.02562 * 15 14 13 24 24 H 1.08001 * 120.85519 * 180.29984 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4365 2.6528 0.7000 6 1 3.5367 1.4403 0.7001 7 6 2.0075 -1.2162 0.0005 8 1 3.0874 -1.2161 0.0010 9 6 1.3056 -2.4319 0.0005 10 7 1.8328 -3.6549 0.0015 11 6 0.7863 -4.4964 0.0016 12 6 0.8537 -5.9795 0.0021 13 6 2.0845 -6.6318 0.0018 14 7 2.1474 -7.9474 0.0027 15 6 1.0617 -8.6967 0.0033 16 6 -0.1996 -8.1245 0.0026 17 9 -1.3033 -8.9035 0.0037 18 6 -0.3162 -6.7426 0.0074 19 7 -0.3069 -3.7699 0.0014 20 8 -0.0326 -2.5887 0.0005 21 1 -0.4850 0.8399 -0.0004 22 1 2.9963 -6.0531 0.0017 23 1 1.1579 -9.7723 0.0044 24 1 -1.2866 -6.2687 0.0118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703982533.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = 34.882814 kcal Electronic energy + Delta-G solvation = -15216.927563 eV Core-core repulsion = 12240.434062 eV Total energy + Delta-G solvation = -2976.493501 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 235.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.89668 -43.23987 -39.75035 -34.28306 -34.26419 -32.33936 -30.92870 -29.85917 -26.70498 -24.46442 -23.48137 -21.62166 -20.98383 -18.42876 -16.98864 -16.83811 -16.61529 -16.07097 -15.67739 -15.57452 -14.95009 -13.87797 -13.70407 -13.38892 -13.33381 -12.94884 -12.14260 -11.78891 -11.69463 -11.56045 -10.74861 -10.61597 -10.37494 -10.03519 -9.61970 -9.43355 -9.16577 -8.92085 -8.17400 -7.22148 -5.19083 0.88660 1.16795 2.68945 2.89711 2.95807 3.11110 3.54656 3.64397 4.03543 4.14036 4.42539 4.63890 4.87405 4.87941 5.07831 5.14120 5.24578 5.67051 5.88114 6.11527 6.48360 6.71660 6.72582 7.03039 7.68905 7.88722 7.93655 8.11328 8.28930 9.76337 10.08696 Molecular weight = 235.05amu Principal moments of inertia in cm(-1) A = 0.065785 B = 0.005484 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.525739 B = 5104.377305 C = 5520.060438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.069 3.931 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.410 4.410 8 H 0.117 0.883 9 C 0.305 3.695 10 N -0.602 5.602 11 C 0.185 3.815 12 C 0.002 3.998 13 C 0.122 3.878 14 N -0.459 5.459 15 C 0.065 3.935 16 C 0.044 3.956 17 F -0.133 7.133 18 C -0.092 4.092 19 N -0.449 5.449 20 O 0.057 5.943 21 H 0.295 0.705 22 H 0.176 0.824 23 H 0.165 0.835 24 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -5.851 0.004 5.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.448 4.448 8 H 0.134 0.866 9 C 0.116 3.884 10 N -0.347 5.347 11 C -0.086 4.086 12 C -0.002 4.002 13 C -0.037 4.037 14 N -0.166 5.166 15 C -0.094 4.094 16 C 0.022 3.978 17 F -0.112 7.112 18 C -0.120 4.120 19 N -0.175 5.175 20 O 0.006 5.994 21 H 0.106 0.894 22 H 0.194 0.806 23 H 0.182 0.818 24 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.921 -6.727 0.010 6.790 hybrid contribution -0.856 1.243 -0.008 1.510 sum 0.065 -5.484 0.002 5.484 Atomic orbital electron populations 1.69616 1.07846 1.31187 1.30083 1.26236 0.95170 1.02485 0.91731 0.85784 0.80121 0.78203 0.79774 1.18750 1.19624 1.17846 1.18649 0.95209 0.85306 1.45589 0.86553 1.24152 0.79589 0.93864 0.90814 1.72349 1.27271 0.98372 1.36665 1.22920 0.87388 0.93884 1.04396 1.18431 0.93438 0.89251 0.99053 1.23063 0.97790 0.89329 0.93539 1.67797 1.30608 1.06645 1.11562 1.22887 0.86312 1.01098 0.99097 1.18614 0.84225 0.88953 1.05978 1.91501 1.51471 1.74093 1.94101 1.21710 1.00698 0.91556 0.98015 1.74593 1.23821 0.91171 1.27930 1.85528 1.25936 1.17418 1.70547 0.89413 0.80647 0.81750 0.83005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.45 12.05 55.57 0.67 -17.78 14 2 C 0.07 1.59 5.50 -17.28 -0.10 1.50 14 3 Si 0.94 16.66 29.56 -169.99 -5.03 11.63 14 4 H -0.26 -4.58 7.11 56.52 0.40 -4.18 14 5 H -0.27 -4.68 7.11 56.52 0.40 -4.28 14 6 H -0.25 -4.43 7.11 56.52 0.40 -4.03 14 7 C -0.41 -10.24 9.48 -37.95 -0.36 -10.60 14 8 H 0.12 2.72 7.85 -52.49 -0.41 2.30 14 9 C 0.31 8.26 7.80 -16.33 -0.13 8.14 14 10 N -0.60 -15.65 11.32 -11.63 -0.13 -15.78 14 11 C 0.19 4.52 7.80 -156.52 -1.22 3.30 14 12 C 0.00 0.04 5.89 -104.75 -0.62 -0.57 14 13 C 0.12 2.19 10.86 -17.21 -0.19 2.00 14 14 N -0.46 -7.44 10.35 -12.93 -0.13 -7.58 14 15 C 0.06 0.91 11.16 -17.42 -0.19 0.72 14 16 C 0.04 0.66 7.34 -39.32 -0.29 0.38 14 17 F -0.13 -1.90 17.28 2.25 0.04 -1.87 14 18 C -0.09 -1.61 9.81 -38.88 -0.38 -1.99 14 19 N -0.45 -11.74 11.91 31.47 0.37 -11.36 14 20 O 0.06 1.60 9.72 15.18 0.15 1.74 14 21 H 0.29 6.30 8.29 -40.82 -0.34 5.97 14 22 H 0.18 3.11 7.88 -52.49 -0.41 2.69 14 23 H 0.17 1.73 8.06 -52.49 -0.42 1.31 14 24 H 0.15 2.66 7.94 -52.49 -0.42 2.24 14 LS Contribution 239.16 15.07 3.60 3.60 Total: -1.00 -27.79 239.16 -4.73 -32.51 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -0.80 Total: 2.01 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -3.47 Total: 2.87 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.78 Total: -52.51 kcal Atomic # 8 Polarization: 1.60 SS G_CDS: 0.15 Total: 1.74 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -27.79 -4.73 -32.51 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703982533.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.395 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds